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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017049 ID=TCONS_00017049|Name=TCONS_00017049|organism=Clytia hemisphaerica|type=transcript|length=1994bpRun BLAST on NCBI transcript from alignment at sc0000257:70036..125765- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017049 ID=TCONS_00017049|Name=TCONS_00017049|organism=Clytia hemisphaerica|type=transcript|length=55730bp|location=Sequence derived from alignment at sc0000257:70036..125765- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017049 vs. Swiss-Prot (Human)
Match: RFOX2 (RNA binding protein fox-1 homolog 2 OS=Homo sapiens GN=RBFOX2 PE=1 SV=3) HSP 1 Score: 127.872 bits (320), Expect = 1.156e-31 Identity = 61/108 (56.48%), Postives = 73/108 (67.59%), Query Frame = 3
Query: 741 PKRLHVTNLPFKVRDTELRNMFAIYGSVLDAEIIYNERGSKGFGFVTMETSEDASKAKEALHGKEIDGRKIEVNKATPR--TNTSKVTPRLRNK--SPIAATTATPGL 1052
PKRLHV+N+PF+ RD +LR MF +G +LD EII+NERGSKGFGFVT E S DA +A+E LHG ++GRKIEVN AT R TN VTP SP+ P L
Sbjct: 120 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPEL 227 The following BLAST results are available for this feature:
BLAST of TCONS_00017049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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