TCONS_00017092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017092
Unique NameTCONS_00017092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017092 ID=TCONS_00017092|Name=TCONS_00017092|organism=Clytia hemisphaerica|type=transcript|length=588bp
TGAAATAACACCGGGAGGGGTCGTCAGAGAatattcatttaaaaaagttg
aaattgacaTTATTTGCATTGAGTTGTCAATTTCATTCTCAAGAgagtaa
tcaatttttttctcttctgaTTATGATATAAATAGAAGTTTGGCGCGCTT
TTCATTCAGCTTTTCATTCAGTTTTTTATGAGATGGAAGTTGGTTGTCTT
TTGGTTGCAAAAAATACTTACTTACGAGAGAATGTGTGAATGATTTTCTG
aacttttattcattttcttctcttttcatTATGCAAACTCATGCTTTGCT
TTAAGGTTCTCTCCAGAAGGAAGTTTCTTATCTCCGGGCTAATCTATAAG
CTGTATGTATGGATTTTCAATTCAGGTTGCCAAGGGCGGGGAAAATTTCG
TTAGCAAAagccaaaatattttcttctctGACCAAATTTTCATAGATTTC
TTAGCCTTCATTCGtcgaaatattttttagttttttttagagaaattaTT
ACCACTGCTAAGAAAAAAGTCATATAAGCGTCCCAGAGAAAAGTTTTtgc
tctttttgttaaatttcataCCATGAATCTGAAAAGAT
Run BLAST on NCBI

transcript from alignment at sc0000257:347265..347852

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017092 ID=TCONS_00017092|Name=TCONS_00017092|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at sc0000257:347265..347852 (Clytia hemisphaerica)
ATCTTTTCAGATTCATGGtatgaaatttaacaaaaagagcaAAAACTTTT
CTCTGGGACGCTTATATGACTTTTTTCTTAGCAGTGGTAAtaatttctct
aaaaaaaactaaaaaatatttcgaCGAATGAAGGCTAAGAAATCTATGAA
AATTTGGTCagagaagaaaatattttggctTTTGCTAACGAAATTTTCCC
CGCCCTTGGCAACCTGAATTGAAAATCCATACATACAGCTTATAGATTAG
CCCGGAGATAAGAAACTTCCTTCTGGAGAGAACCTTAAAGCAAAGCATGA
GTTTGCATAatgaaaagagaagaaaatgaataaaagttCAGAAAATCATT
CACACATTCTCTCGTAAGTAAGTATTTTTTGCAACCAAAAGACAACCAAC
TTCCATCTCATAAAAAACTGAATGAAAAGCTGAATGAAAAGCGCGCCAAA
CTTCTATTTATATCATAAtcagaagagaaaaaaattgattactcTCTTGA
GAATGAAATTGACAACTCAATGCAAATAAtgtcaatttcaacttttttaa
atgaatatTCTCTGACGACCCCTCCCGGTGTTATTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009557XLOC_009557Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017092-exon-sc0000257-1491911889:347265..347852TCONS_00017092-exon-sc0000257-1491911889:347265..347852Clytia hemisphaericaexon
TCONS_00017092-exon-sc0000257-1510915933:347265..347852TCONS_00017092-exon-sc0000257-1510915933:347265..347852Clytia hemisphaericaexon
TCONS_00017092-exon-sc0000257-1575043694:347265..347852TCONS_00017092-exon-sc0000257-1575043694:347265..347852Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:347265..347852 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.280826	0.365133	0.635932	1.76279	0	0	0	0	0.0788824	0	0	0	0.311281	0.0646538	0	0	0	0.144053	0.398033	0.312385	0.362025	0.397312	0	0.0975786	0	0	0.385069	0.136985	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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