TCONS_00017192 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017192
Unique NameTCONS_00017192
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017192 ID=TCONS_00017192|Name=TCONS_00017192|organism=Clytia hemisphaerica|type=transcript|length=599bp
AAAAAAAGTgctttattttggtttttcaatttgtagagggtctgtaaaac
tgATTTCAAATTAATCTTGTCTCAAAAGGAAATAAAGGAATAATGGCAGA
TGCTGCTGCAGAAGCTGCTGTAGAGAAAACTAATTTTGATAATATCAGTA
CCTCTTCTGGTTCAGAAAATCTAGATTCTTCATTCAGTGATGTTAGCACA
CCAGTGGCGGTCAGAAAAGTGGAACCACAAACTTTAGAAGAATCTTGTGA
TAACATGGTTGATAAAATTACAGATTATCTCAACGGTGAATTAGCAGCTA
CCTCTGCTGATTACAAATTGCTGGAAAACTTAAACAAGATGGCTACAGAA
AAATATACGGACATGTCCAAGACTACAAACAACCTGATAACTAATATGGA
CGATATCAATGAAAGATACAAGGCATTGGCACCTTATTTACAACAAATTG
ACCTGTTAGAAGAAAGTGTTCTCAAGTTGGAACAAACTGCATACAAGTTA
GACAGCTACTCTAAACAATTAGAAACGAAGTTCAAGACCATGGAAAGGAG
TTCTGGAACCATTGTTGGTAACCATAGCAACCAATCACCATGTCATCCA
Run BLAST on NCBI

protein sequence of TCONS_00017192-protein

>TCONS_00017192-protein ID=TCONS_00017192-protein|Name=TCONS_00017192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MADAAAEAAVEKTNFDNISTSSGSENLDSSFSDVSTPVAVRKVEPQTLEE
SCDNMVDKITDYLNGELAATSADYKLLENLNKMATEKYTDMSKTTNNLIT
NMDDINERYKALAPYLQQIDLLEESVLKLEQTAYKLDSYSKQLETKFKTM
ERSSGTIVGNHSNQSPCHP
Run BLAST on NCBI

transcript from alignment at sc0000260:292011..297613-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017192 ID=TCONS_00017192|Name=TCONS_00017192|organism=Clytia hemisphaerica|type=transcript|length=5603bp|location=Sequence derived from alignment at sc0000260:292011..297613- (Clytia hemisphaerica)
AAAAAAAGTGCTTTATTTTGGTTTTTCAATTTGTAGAGGGTCTGTAAAAC
TGATTTCAAATTAATCTTGTCTCAAAAGGAAATAAAGGAATAATGGCAGA
TGCTGCTGCAGAAGCTGCTGTAGAGAAAACTAATTTTGATAATATCAGTA
CCTCTTCTGGTTCAGAAAATCTAGATTCTTCATTCAGTGATGTTAGCAGT
AAGTATTTTTTGGTGTTTTTGTTTAATAACATCATTTTACCATAATCATG
TAAAACTCGTCAGAAAAATCAGGAATACTTTCTTTAAACACATGCAAATT
ATTCACTCGACAATTTCACCACAGCACACTAATATTTATGATTAATAAAA
AATATTCAAATCAGATTTATTTGTGAAAATAATTATAATTATATTTTTCA
CCTTTAAAATAGCACCAGTGGCGGTCAGAAAAGTGGAACCACAAACTTTA
GAAGAATCTTGTGATAACATGGTTGATAAAATTACAGATTATCTCAACGG
TGAATTAGCAGGTAAAATTTGGGATGATCCACGTGAAAACTCATCTACAA
ATTATAATTGTACTCTATAATAACCAGTAAATGTTTGTTGAGGCTCAGCT
TTTTGGCACTTGAGTCTCAAATAGTTCTACCCTTTTCTTATATTGAAGGT
TTTATTTTTAAATAAGAGTGATATTGTTTACTCGCTCATCAATTTTAACA
AAAAAAACTTTAAATTCTTTACCAAAAAATGGTAAAGAATTGCAAGAAAT
AATTTCTTTTTCAAGAATTCATACGTCTTTGTTACACTTGTAAATTTCTT
AATCAAAAAGACTTGATTAAAAATTTCAGAAATTTTGAAATCTAGTAGTG
CTAAGGACAAAGAAATTCATACAGATGTTCTCCATTATGACACAATCTCC
CAGGAAGGAAAAAAAAATTGCTGACTTCATCCAAAAAGCTATGACGTCAT
TACAAAGGTGTAGTTTATATGGCCGTTTTTTTGCCGTGTCAAAAAAGACA
AAAAAGTGGGTCGTTTAAACCAGTGCCGATCTTTTGCCGCACTTTTTAAT
TAAGTTCGGCAAAATTTGCCTTGTTCAATTGTTAAGGTCGACCTCAAATC
AAAATTTGATTTATATAGAAGCTCTTTTGCTGCACTCAATTCGACTTCGT
TTTTTTTATGAAGTTATTTGAATTAGACACGACAGAAAACCGGCCATATA
AATTTCCACCTGTCGGAAAAAAGCCCAAAATATATGGTTTATAAAAATGT
CTCTCACAGTCGAATTAGTAAAACAAACTAGATTCTGTTTAAAGATTTTT
AAAGTTTTTATGGTAAATAGAAGTGGCATAAAACAATGATAATTCAAAAG
TAGTTGGTAACGTTACCAAACAAAAACAGTATTTTTGTGATAAGTTATTT
TTAATTGTTCTTGTGGAGATAATTTTCATCGAAAAAGTCTGATGTTTTTT
GTTCTATCAAATTTACTATATAATACTTATATTTTTGGATTTAGCTACCT
CTGCTGATTACAAATTGCTGGAAAACTTAAACAAGATGGCTACAGAAAAA
TATACGGACATGTCCAAGACTACAAACAACCTGATAACTAATATGGACGA
TATCAATGAAAGATGTATGTTTTGTTTTCTTACTTCATAATCTGTCTGAA
TGCTTCTTTTTGGACCTACCTAAGGTAGTCCTTTAAATTAACCCTTGTCC
GTTCGTTCGTTCGTTCGTTCGTTCGTCCGTTCGTTCGTCTGTTGCCAGCT
TTTCTCAGGATTGGCTCATTAGTTTTTTCTGATTTTTGGCACAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAATGATTGTTTTTCTCCTTATTGCTATCTAAGTTTCATC
ATCAGGTAGGTCCATTCAGCATATTGCTTGTTAAAGTTCCTTTCAATTTA
ATTCTCAGTTAAATTGCAAATGCGAATAGATGTTTTTCTTTAAATATAAG
TGTAACGTTTATATGCATTCTAAGACCTGGGATTTGGTGAAAAATATGCA
CACTAAGCACCAGTGAGCTTATGGATTTTGAAAAGATCTTCTGTCAAGTA
TTTACACTAAAAAACCAATAGCATAATTCCAATTTGAACCTAATGAAACT
CTTAAAATAATTCTTGTCAAGAATCTACCGAAAAGACCAATCTCCGGAAG
AATAAGAATAACTGTAGCATAATTTGAGCTTGATTCCAAAATACAGCTAA
ACATAACTGAGCCTGTCTTTCAAAAAAGATATGCTTATTAAAAAAATGTA
ACTTTCGATAGAGTTTGAATTGAATTGCAATTTTTTGCCTGTTTAAGTGG
AGGTTGGGTTCGAGTCTACCACGATTGAATGGAAGCCAATTGGAAAGTAT
TTGCACCCTGATTGGATTAGATTATAAAAAACTGATTTATCATTATGGAA
AATAACTTGGCTTTGATTTTTATTATTTTACAGACAAGGCATTGGCACCT
TATTTACAACAAATTGACCTGTTAGAAGAAAGTGTTCTCAAGTTGGAACA
AACTGCATACAAGTTAGACAGCTACTCTAAACAATTAGGTATATTTGTTG
TTAATATTATTCTTGACTTAAGGTCCATCAGGTCCAAAATACACAAAATC
TTGTTGTTCAGATTTGGAACTATAAATACGTTGTTATATAGTTCGAGTTT
CGATCTAAATAAGAACTTCAGAACAAAGCTCTGTGGTGCTATTATACCTA
TCATTCTCAATATTTCTTTTCACCAAAACAGATCCCTATAATATTCTGTG
TCTCAAAGCTCTTGTGGGCATGGAGGTTGAAGTAAACTTAAATGAAGATG
AAATTTATAAATTCTTTTTACCTATTTTCTAGAAACGAAGTTCAAGACCA
TGGAAAGGAGGTGATTGTCTCTGTAGTAATAATGTTGTTTGGTTTGCTCT
CTTTAGCTGGGGCTTCAATAGCTTAATCCATGTTCAGCAAAGCCAGACAT
CAATGAAGCGTTTTTCTTCACATACAAAAGTTTCCTGTTAGTAATACAAA
AAGGGGTCACAGAATCACAAGTCTTTTGAACGAAGGAGAGTCTCCGTCTC
GCAAAGTTTATTTAATTTTGAATTAAATTCTAAACTGAAACTTTCCAAAG
AGTCTTTTCTTAAATTGTCTGTAATTTTTGACTTATTTCAACTCAGACAT
ACCCATATCTCACAAGCTTACTTTCTGTATTAGGCTTCAAAGGGTGTGAA
ATTCCTATTGTTATTGTTCTAGAAAAACTGATTTTGTAAATATATTTCAA
GTAAATTAATTAATGCAGGTCATGTAATTTATAAAATTTTTGAAATATTG
AAAATATTGCATTTTAAATTTGTTCAATCTTTAAAGATCATCAACAATAA
TCTTATGATTTTTCTTATATCCATTGGAGATCAAAAATCTCTGCGATAGC
TTTTTTTTCCAATTCTTTTGTATGGTAAATAAATTAGTTTAAGACTAGTC
TACGTAAATAATCGTATCAATGTATGTATCGCTGTTTTCTTACATGTAGA
AATTGCTTTATACAATGATAATTTATTTAGACTTTATTAAGATATTCTAT
TTTTGCATTTATTTTTTGTTATTGCTCCCATTTTAAAGGATGTCAGCATT
GGGGCAATTTTATCAATGAAAAAAAAATCTAATTATTCATTGATCTAAAC
TACCAACATTGTTTAAGAAATAATAATGCCTGTACTTTCAGGTGCCGAAT
AAACGTCCCCCGCTTGTTAATTTTTCGATTTTTTTTCAACCTCCCCCCGG
ACCTTATTTAGGTCCATTTTCCAACCCCCCCGGTAATTAGGTCCCCCTCC
CCGTTTATTTAATTTGAAAAACTTTTACGACCCCCTCCTTTATTTTGACC
CCCGGTTTATTTGGCACCTGAGAGTAAGTAGTAATTTGTAATAAGTAGTA
ATTAAATAATCATGAAGAGTCCTAAATTAACAGTAATGAAATAATGTTTT
TTTCTTTTGAAATTCAAAGATGATTTTTGAAATATTCGAGGGGTGATATA
GATTTCCAAGTTAAAGAATATGTGCCACCAGACTTTCAATCCTTATCATC
TGTCAAGAGCCTAGGTAACCCCTACCTAAATTAGAGAATGCTCATTTTCA
CGAGGTTCTAGTGAAATAGTTCTCACTCCGCCGTTTGAAGTAAAGCAAGC
TTTCCATAAAGCTAGAATCTTTTTTAGTGTTGCTCTTTCCTTTTTAGTCA
ACTACCATTAATAAACAAACAAAATATTAACTAAAACTAATACAAAATTA
ACAGTTCTGGAACCATTGTTGGTAACCATAGCAACCAATCACCATGTCAT
CCA

Coding sequence (CDS) from alignment at sc0000260:292011..297613-

>TCONS_00017192 ID=TCONS_00017192|Name=TCONS_00017192|organism=Clytia hemisphaerica|type=CDS|length=3042bp|location=Sequence derived from alignment at sc0000260:292011..297613- (Clytia hemisphaerica)
TTCTGGAACCATTGTTGGTAACCATAGCAACCAATCACCATGTCATCCAA
AACGAAGTTCAAGACCATGGAAAGGAGACAAGGCATTGGCACCTTATTTA
CAACAAATTGACCTGTTAGAAGAAAGTGTTCTCAAGTTGGAACAAACTGC
ATACAAGTTAGACAGCTACTCTAAACAATTAGCTACCTCTGCTGATTACA
AATTGCTGGAAAACTTAAACAAGATGGCTACAGAAAAATATACGGACATG
TCCAAGACTACAAACAACCTGATAACTAATATGGACGATATCAATGAAAG
ATCACCAGTGGCGGTCAGAAAAGTGGAACCACAAACTTTAGAAGAATCTT
GTGATAACATGGTTGATAAAATTACAGATTATCTCAACGGTGAATTAGCA
GATGGCAGATGCTGCTGCAGAAGCTGCTGTAGAGAAAACTAATTTTGATA
ATATCAGTACCTCTTCTGGTTCAGAAAATCTAGATTCTTCATTCAGTGAT
GTTAGCATTCTGGAACCATTGTTGGTAACCATAGCAACCAATCACCATGT
CATCCAAAACGAAGTTCAAGACCATGGAAAGGAGACAAGGCATTGGCACC
TTATTTACAACAAATTGACCTGTTAGAAGAAAGTGTTCTCAAGTTGGAAC
AAACTGCATACAAGTTAGACAGCTACTCTAAACAATTAGCTACCTCTGCT
GATTACAAATTGCTGGAAAACTTAAACAAGATGGCTACAGAAAAATATAC
GGACATGTCCAAGACTACAAACAACCTGATAACTAATATGGACGATATCA
ATGAAAGATCACCAGTGGCGGTCAGAAAAGTGGAACCACAAACTTTAGAA
GAATCTTGTGATAACATGGTTGATAAAATTACAGATTATCTCAACGGTGA
ATTAGCAGATGGCAGATGCTGCTGCAGAAGCTGCTGTAGAGAAAACTAAT
TTTGATAATATCAGTACCTCTTCTGGTTCAGAAAATCTAGATTCTTCATT
CAGTGATGTTAGCATTCTGGAACCATTGTTGGTAACCATAGCAACCAATC
ACCATGTCATCCAAAACGAAGTTCAAGACCATGGAAAGGAGACAAGGCAT
TGGCACCTTATTTACAACAAATTGACCTGTTAGAAGAAAGTGTTCTCAAG
TTGGAACAAACTGCATACAAGTTAGACAGCTACTCTAAACAATTAGCTAC
CTCTGCTGATTACAAATTGCTGGAAAACTTAAACAAGATGGCTACAGAAA
AATATACGGACATGTCCAAGACTACAAACAACCTGATAACTAATATGGAC
GATATCAATGAAAGATCACCAGTGGCGGTCAGAAAAGTGGAACCACAAAC
TTTAGAAGAATCTTGTGATAACATGGTTGATAAAATTACAGATTATCTCA
ACGGTGAATTAGCAGATGGCAGATGCTGCTGCAGAAGCTGCTGTAGAGAA
AACTAATTTTGATAATATCAGTACCTCTTCTGGTTCAGAAAATCTAGATT
CTTCATTCAGTGATGTTAGCATTCTGGAACCATTGTTGGTAACCATAGCA
ACCAATCACCATGTCATCCAAAACGAAGTTCAAGACCATGGAAAGGAGAC
AAGGCATTGGCACCTTATTTACAACAAATTGACCTGTTAGAAGAAAGTGT
TCTCAAGTTGGAACAAACTGCATACAAGTTAGACAGCTACTCTAAACAAT
TAGCTACCTCTGCTGATTACAAATTGCTGGAAAACTTAAACAAGATGGCT
ACAGAAAAATATACGGACATGTCCAAGACTACAAACAACCTGATAACTAA
TATGGACGATATCAATGAAAGATCACCAGTGGCGGTCAGAAAAGTGGAAC
CACAAACTTTAGAAGAATCTTGTGATAACATGGTTGATAAAATTACAGAT
TATCTCAACGGTGAATTAGCAGATGGCAGATGCTGCTGCAGAAGCTGCTG
TAGAGAAAACTAATTTTGATAATATCAGTACCTCTTCTGGTTCAGAAAAT
CTAGATTCTTCATTCAGTGATGTTAGCATTCTGGAACCATTGTTGGTAAC
CATAGCAACCAATCACCATGTCATCCAAAACGAAGTTCAAGACCATGGAA
AGGAGACAAGGCATTGGCACCTTATTTACAACAAATTGACCTGTTAGAAG
AAAGTGTTCTCAAGTTGGAACAAACTGCATACAAGTTAGACAGCTACTCT
AAACAATTAGCTACCTCTGCTGATTACAAATTGCTGGAAAACTTAAACAA
GATGGCTACAGAAAAATATACGGACATGTCCAAGACTACAAACAACCTGA
TAACTAATATGGACGATATCAATGAAAGATCACCAGTGGCGGTCAGAAAA
GTGGAACCACAAACTTTAGAAGAATCTTGTGATAACATGGTTGATAAAAT
TACAGATTATCTCAACGGTGAATTAGCAGATGGCAGATGCTGCTGCAGAA
GCTGCTGTAGAGAAAACTAATTTTGATAATATCAGTACCTCTTCTGGTTC
AGAAAATCTAGATTCTTCATTCAGTGATGTTAGCATTCTGGAACCATTGT
TGGTAACCATAGCAACCAATCACCATGTCATCCAAAACGAAGTTCAAGAC
CATGGAAAGGAGACAAGGCATTGGCACCTTATTTACAACAAATTGACCTG
TTAGAAGAAAGTGTTCTCAAGTTGGAACAAACTGCATACAAGTTAGACAG
CTACTCTAAACAATTAGCTACCTCTGCTGATTACAAATTGCTGGAAAACT
TAAACAAGATGGCTACAGAAAAATATACGGACATGTCCAAGACTACAAAC
AACCTGATAACTAATATGGACGATATCAATGAAAGATCACCAGTGGCGGT
CAGAAAAGTGGAACCACAAACTTTAGAAGAATCTTGTGATAACATGGTTG
ATAAAATTACAGATTATCTCAACGGTGAATTAGCAGATGGCAGATGCTGC
TGCAGAAGCTGCTGTAGAGAAAACTAATTTTGATAATATCAGTACCTCTT
CTGGTTCAGAAAATCTAGATTCTTCATTCAGTGATGTTAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009613XLOC_009613Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017192-proteinTCONS_00017192-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017192-exon-sc0000260-1575043694:297416..297613TCONS_00017192-exon-sc0000260-1575043694:297416..297613Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1575043694:297103..297201TCONS_00017192-exon-sc0000260-1575043694:297103..297201Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1575043694:296000..296119TCONS_00017192-exon-sc0000260-1575043694:296000..296119Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1575043694:293776..293880TCONS_00017192-exon-sc0000260-1575043694:293776..293880Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1575043694:293454..293481TCONS_00017192-exon-sc0000260-1575043694:293454..293481Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1575043694:292011..292059TCONS_00017192-exon-sc0000260-1575043694:292011..292059Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1510915933:297416..297613TCONS_00017192-exon-sc0000260-1510915933:297416..297613Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1510915933:297103..297201TCONS_00017192-exon-sc0000260-1510915933:297103..297201Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1510915933:296000..296119TCONS_00017192-exon-sc0000260-1510915933:296000..296119Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1510915933:293776..293880TCONS_00017192-exon-sc0000260-1510915933:293776..293880Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1510915933:293454..293481TCONS_00017192-exon-sc0000260-1510915933:293454..293481Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1510915933:292011..292059TCONS_00017192-exon-sc0000260-1510915933:292011..292059Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1491911889:297416..297613TCONS_00017192-exon-sc0000260-1491911889:297416..297613Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1491911889:297103..297201TCONS_00017192-exon-sc0000260-1491911889:297103..297201Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1491911889:296000..296119TCONS_00017192-exon-sc0000260-1491911889:296000..296119Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1491911889:293776..293880TCONS_00017192-exon-sc0000260-1491911889:293776..293880Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1491911889:293454..293481TCONS_00017192-exon-sc0000260-1491911889:293454..293481Clytia hemisphaericaexon
TCONS_00017192-exon-sc0000260-1491911889:292011..292059TCONS_00017192-exon-sc0000260-1491911889:292011..292059Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000260supercontigsc0000260:292011..297613 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.3351	33.482	17.0238	14.2605	28.6519	19.4117	31.818	40.3747	30.9524	35.4433	19.6038	26.699	20.7204	21.2869	26.4606	34.4408	30.4818	32.9487	12.3019	17.9797	25.8151	20.6481	45.9192	42.9857	39.6529	40.0132	19.1551	12.1572	26.6293	29.4188
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019269BLOC1_su2
Blast
[Close]
BLAST of TCONS_00017192 vs. Swiss-Prot (Human)
Match: BL1S2 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens GN=BLOC1S2 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.146e-31
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 3 
Query:  240 ESCDNMVDKITDYLNGELAATSADYKLLENLNKMATEKYTDMSKTTNNLITNMDDINERYKALAPYLQQIDLLEESVLKLEQTAYKLDSYSKQLETKFKTMER 548
            E C +M  K+  YL GEL ATS DYKLLEN+NK+ + KY +M     N+  N+ D+N++Y  L PYL QI+++EE V  LEQ AYKLD+YSK+LE K+K +E+
Sbjct:   39 ELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEK 141
The following BLAST results are available for this feature:
BLAST of TCONS_00017192 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BL1S21.146e-3152.43Biogenesis of lysosome-related organelles complex ... [more]
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