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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017214 ID=TCONS_00017214|Name=TCONS_00017214|organism=Clytia hemisphaerica|type=transcript|length=685bp
CAATGACCTCTATTGAGTAGCCAATCGATGACGGTCGCGTCTATTTTGTA
AACATTTATTTAGATTTTCGACGAGTCATTTTTAACTGGATACCCTTTCt
ccctctcaaattttgaatcaTGAAGCCTTCAAAGGCTTTTTATTGCTTGC
TTCAGTTCATTTTGTTACAAATTGTCAGATGTAAAGATGAATTCCAACAT
GTGACATGTGGTTCatcattgaaattatttaacaatagacaaaacatacg
attacATTCTCATGACGTCAAATATGGATCAGGAAGTGGTCAAcagTCTG
TCACTGGTTCACGAAGTGCTGATGATCAAAACAGTTATTGGATTGTTCGA
GGAAGACATGGTCAGAAATGCGATCGAGGAACCGTCATAAAATGTGGAGA
TAAGATTCGCTTGCAACATTTGGCAACCAAACGTAATTTACACAGTCATT
TCTTCCAAAGTCCTATCACGCATAACCAAGAAGTCAGCGCTTTTGGAGAG
GGAGGAGATGGAGATTCTGGTGAGTTGGATTCTAGGCTTGCTTTCAACCA
CATAGACAGTTTCATGTAATTTAACAACGAAGGTCGAATTAGATTTTACA
AATCAACTTCTACGCTTTGCCCATTTTCACCAAATATTGTAATTTCCTTG
AAAATCCTGATTACAATGTTTGGTTTTGCAGGGCA Run BLAST on NCBI protein sequence of TCONS_00017214-protein >TCONS_00017214-protein ID=TCONS_00017214-protein|Name=TCONS_00017214-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MKPSKAFYCLLQFILLQIVRCKDEFQHVTCGSSLKLFNNRQNIRLHSHDV
KYGSGSGQQSVTGSRSADDQNSYWIVRGRHGQKCDRGTVIKCGDKIRLQH
LATKRNLHSHFFQSPITHNQEVSAFGEGGDGDSGELDSRLAFNHIDSFM Run BLAST on NCBI transcript from alignment at sc0000261:2460..15146+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017214 ID=TCONS_00017214|Name=TCONS_00017214|organism=Clytia hemisphaerica|type=transcript|length=12687bp|location=Sequence derived from alignment at sc0000261:2460..15146+ (Clytia hemisphaerica)
CAATGACCTCTATTGAGTAGCCAATCGATGACGGTCGCGTCTATTTTGTA
AACATTTATTTAGATTTTCGACGAGTCATTTTTAACTGGATACCCTTTCt
ccctctcaaattttgaatcaTGAAGCCTTCAAAGGCTTTTTATTGCTTGC
TTCAGTTCATTTTGTTACAAATTGTCAGATGTAAAGATGGTAAGTTATTT
TATTTCTGCTAGTTTTTAGTCCCTCCATCACGCATCAGTCAGTCCAGTTG
AATTCCGCACAAacggaattaaaaaaaaattaaaaaaaccctttttaacc
tttttaacttttttgttctcattcaaaatgaccggtcAGCAAtaggagaa
ttagagaacgtccGCCGCCTTAATTCTATCGGGCGATAGGCAGCTATCct
ccgatgggattaacaaataacgagtgtgtgtAACTTGCATGCCGCgcaaa
agtgacgtcaaacgctcgggatacatcgttttgccactaatttggtcttc
ttcgttccagacattcgcgttgtgtgttccactacagattgttttcatat
ttcgatttaaaagcctactctgtgcgaaagagaaattgtgtattttttaa
tacaccgtTGACTTTGACTTTTAAGGTTCGGTGTGAAATAATGTGGCatc
ccagaaaatttttgttagcTACCCCCGTCAAACaatgttcattttttaat
tttttctaccctcagaaataatttttatttttccagtagtggtcggaaat
tccgatgaaaatccatgtatatatttttgcaaaatgcattggaaattcca
ctcttttttgccttttttaattcaattgaaTTGTTCATTTTATTCTCTCg
cattggaaattttgaattttggtgaaaacttttgccctcagaaatcctgt
gtcgtccgcccccttgttacagacaaattctggaatggcccgaTGGTGGC
TGAATTTTAATCCCATGTTTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNaatctttaaaaaagaagcgaacaa
taaaatataattaccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttatgaagttctctggaatt
tcgattgcatttattcaggttgattttttatgacttctaatggtactttt
tctaacgagtttgattactctatTCTCACacatatgtctttttttttcgc
gtccttttccgtgattacttttatttatatttttcaagacaggtaagaag
gtatattgatgtaactgccaagttagagcagttgacggtacacgtgcgtt
tgcgtattaagttgaagttggtttgatattctatGTTTGATATtcgatat
tcgtttgatattcgtttgatattcgtttgatattctcaaatttgcgtttt
aaagtttttgtgactacttttggaattggaaactattggaagccaataga
gtttattctcaagggtgtctgtgcaaaatttcagtgcTCTTcgtcgcagt
gtgctccctctaaaattGCTAAATCGCAAAATCTAAATTATGCGAATATG
ACAACTTGGGCTACTGTGAGGGAGAGCGGTTACTTTTGGGTTTgcaaact
attggaagccaatagagtatGTTGCCAAGAGTAAttgtgccaaatttgac
cgCTCTCAGTCACAGTAGCCCAAGTTGTCATATTCGCATAATTCAGATTT
TGCAGTTTAACaattttagagggagcacactgcaACAGGGAgcagtcaaa
tttggcacaatTACTCTTGGCAACATaatctattggcttccaatagtttg
cAAACCCAAAAGTAACCGCTCTTCCTCACACTAGCCCAAGTTATCATATT
TgcatattttagatttttcagtTTTGCAATTTTAGAGGGAGCAGCACACT
gtgacggagagcgctgaaattttgcacagacacccttgagaataaactct
attggcttccaatagtttccaattccaaaagtagtcacaaaaactttaaa
acgcaaatttgagaatatcaaacgaatatcaaacgaatatcgaATATCAA
ACatagaatatcaaaccaacttcaacttaatcgtttgcgtagggtaaaat
ggcaaaatgtgaaaatcgattttgtcaaaatttttttgaaaaatgaccct
acaagatttgactaaatctttttattccatgaagagattactttcaaata
aaaaatatattgacaatgaatgggTAAGCCTTCTAGAAATCCAAacataa
attgcatagcttttaccaaaaaatagcactttaggatcagaaacagtcaa
aaaccagctttttccaattttctttgagttacaggaattaatttcttgtt
tgttttgatctgaaattttcagtaggggtggccaacatggttcccttact
catatcaggggggggggcgagacgggggtaagataATTAGAGTTtataag
taaaatcttaattatcacccaaaaaagtgcctttttttgtccatatcttt
taaaggAATAGTGTATTGCTACAGTTGAACTCGACAGCAAAGAAACTCGC
TCATGTTTTTCCCGCAAACAGTAAAACTACCCGAGTGAGTATTTCCCGTC
AAGGGCGCGAGAAAACCGAACGAGATTCTAGTCTTGCTCAAAAAACGAGC
TAGAAGAAAATGGCGACTGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTAA
CCAATTTATACAGAACTATCTCTTCTCTTGcttctttcagttaaataaca
atgtagtcaattttgaacactcaagaggagaaagagatttctatttttct
ctcgaaagtgtgcatatggatctgagaagtgaaatgaaactcatcaacaa
GACAAGAAAAACTTGTTCatctctcgaaagtgtgcatatatggatctgag
aagtgaatgaaactcatcaagacaagaaagccttgttcaaagaagatttt
catggttcgtacttcaaaatatgggacatttttgttcatccaatgacttg
aaaaatcaactctggAGACTGTAGTCTACATAACTTAAGAATACTTCGAT
ATAATCATGGAACTTggatattattttctcgataaaagcactgtaccatg
agattttgcacgaaccaaataaaatgaagtgaaaagtaaCTCTACGATGA
ATGAAAGACTCTGTCTGGTTCTGAGCATCATATTgtactgatttggaatt
ttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGTAGGaca
cattgatttgattaaatttaaaatcctgtgactatcattgaaaattaaga
tcaaaCCATCGATCAAGGGACTTTGTCTTCTTGTGCTTATGGCATGGTTC
GACTCTGAAGCTACATATCTCTGCACCCTTTTTGAAAGTCCTCGTGCATG
CTATGATTTGGGTACAGTTGAACGTATTTTTCATGTACCAGTTTGTTTCG
TGATGGATGGACATAGCTGCATTTTTTTACAGTGGTATGGATATGCTGct
gtaagaagaactgtttacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGAAAAATTCTGAGGATGctttaattgagaatttttttttg
aatggaaagaaatattttggaaggcaatttcaaagaggaggtcatattat
tattcaaatactttgcatcactcttgataaaagtgaagccattaagaatt
tgtaaatactttatatagttttaaaatccaaatgtatgtacaggaatttt
gtaatgtgatgttatttttttcaaaaaatgctttatgctttactatttgt
tattttgttcatcTCCTCTTGATgaaaccccggggggggtactagggcaa
gatgggttacggggatgctccgctggtcagggtaccttttttaacctccg
ctagtcccaggtagggtcacaaaaacaccaagatagaaaaatcagtccct
cgtagggtgcctatttttggaaaatttggggaaaaagtagaaaattttgg
aatttcagtcccattcagggtcacttttttcgcaaattNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
cagggtcacttttttcgcaaatttcgagtcccacgtagggtctatttttc
gaacctcagcggagcacccccgtcggtcgacaagggtagtaccccccccc
cggggatgaAACACACAGaacacaggaaaacaaaaaagaactgtttataT
CTTCTCATCTCACAATCTCTTTGTGTATAGAAAAACTCTTGTGTAGTATT
TACATTTNaacttagatttttttcatttttggatatgtttttCAGTATAA
TGAACTGAgcaaaatcccaaaatattttggtccgaaaatccataatggcg
gatttatggtaattttaagtttttgccatttttggtCATTGgagtttatt
tcattttcaagttgAAATTGTGCTTTCTCAGAACAAGATAACCAAATCAT
TTTTggttatcttgaaaatatggcCGGTTCAGTATGCGNGAACAAGATAA
CCAAATCATTTTTggttatcttgaaaatatggcCGGTTCAGTATgcgttt
tttaaaaaatattgagtttttcaaaatggtaccctgaactatgacgtcat
gaaaacagcccaaaatcgattttaagtCTACTTTGGCCTTGCCTGCCCAG
GTTTTGGGAAggttttttttgttcaaaatgtttttttctggtAGGCCAAC
CAATAGGCTTTCCATTAagtggtttcaaaaaaaaaatttcatggcaCTGG
CCTCCGGAGGCCCGTAAGTGCCTAGTttaaagtttagacatgggtagttc
gcgTTCGTGTTATGCATTctcaaaccaaacgcacgtgggtacctttttta
tcttcaaattcattTTCGCAAATCAGTCTCATTTTAGAGGACAAAAGTTt
gtgaaaaacaacaaaattgtaTCCTGTTTGTCACACATTTTCATTTATAA
CTCAAGTTTGGTTCAAGAAAAAGACTATTAATTTGCAAAGCATATACTTC
CATTATGGAAACAACATTTTTACATAAAATTGACAAGAATTTAGAAAGTC
TAATTAAAAATTGAGTGGTAGGAAGACATGCATATGCGTGATGGACAGGA
CGTCCCGTCCGTCACAGACTTTTGCTAGTATTCCAAAGAcgaaacaaaat
attaaaaaatgacTTAGTCCCGACTGATACTTTCTGCCACAGTACCAAAT
CCACAAAAACTTAAGCTCTAATACCTAACGTATCCCACTCTATGGTAATT
TGAATACAATTTGCCTTTTTTACAAAACCACCGTACAGATTTGGTGCAAT
TCACCCAGGAAATTGAAGGTTTCTGAAAATATAACATCAATTTTAAAAAG
GGTTACACTCAACTGAGTCTCGTGTTGGCAAAATGAAAAGGATTCTATTA
CCAAACCATTTAGCTATGTGTAGGTAGTAAAGAATTAGAGGTTCAAGGCT
ATCCTTATCATAAAAATGATGGTAAAACAGATCAAAAGTCAACATACTGG
AAATCTtgtattgatgacgtcatttaggaTTTTTaatatgcaaaaaattg
acactgCAACAAgttttgttttaattaaaatgtgtcagtttattttttca
taaattcctttagaagttttctttttttaggctAATTATCCTATCTTATG
TCTTATAGCCTTTTTGCTAGATATGATGTTATTTTGAATGATTAACATCT
GTAGTTTGCAATCAAATGTCTTTGTTGAGTCATACAAAATAAAACTTTCT
CTCTTTTGACTGATGTCCTTCTTTTATAGAATTCCAACATGTGACATGTG
GTTCatcattgaaattatttaacaatagacaaaacatacgattacATTCT
CATGACGTCAAATATGGATCAGGAAGTGGTCAAcaggtattttatttttt
taactacCATTTGGACAACaggtattttgttttttaactaccaattttgc
aattttttgatttgataacaaatgtcattcccagtcctttcaAACAATGT
GCAGTCCTTACAAATTCAAGATTTGTTTGTTTCGAGCTTATttgtcagat
tgtttgttttctgaCATCCCTAAAAGTTTCAGCATGGTATGTAAAAAACA
ATGATGATCTGATCACAGGTTAATGGAAAGCTGTTATcaacatttatttt
ttatgtagtTTTATATCACTGTCCCATTTATACTTTTTATGTCTTTCTAT
ATTTATactaaagttttttttgctaaaatgtTCATCATATTCCTTACAAA
TTCTGCCGTTTGTTTTAgtttgatttttggacctaccccggtggggtgga
ggtcctataaattaacccgtgttcgttagttagttagttagttcgttcgt
tcgttagttaccaacttttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTCTATACATACCAACACAACAAAGCTTCCCTTTTATTCCA
CTCTTTCTGTCAGACATTTGCcataaaatgttaatttttttaaaagcctA
CCTGGAAACCACGCTTGTcatcaacttttctcaggattagctcgttatat
ttttttgattttttgcacaatgatgcagtGTATTGATTTTTTTCGGTTTG
AACTTTTGTACATTTCTTATTCTGGAAAtaatctcttttttttcctattt
tctttCATACAACATCCTTCATAATGGTAATTCATAGGATGTAGCCtgat
ttattttcataaaactgATTGTCGTTGGAACTTTTATTAAAATCACTGTA
AAATCCAATTACATTTGGCAAATTTATTTGCACCTTTACTTTCTCtcaat
atttattttgattttgggcttttttttttttcttcttgcttttcgtcttt
ttttgacagtcttcattaggtaggtcccagcttgtttctttgaaaaatag
agACAAGCTAGTATAAGCATGGTAAAAAATGcatttcaattcattttttg
taGTCTGTCACTGGTTCACGAAGTGCTGATGATCAAAACAGTTATTGGAT
TGTTCGAGGAAGACATGGTCAGAAATGCGATCGAGGGTATAAGAAATATT
TGCAATCCTGATGTACAGTGTGTACAGAAAAATGAGAGCATAATttgtac
aaacaaaaaatatttcatgtaTTTTATGCCAGTTAATCTATTTTCAATTT
CTCAACTTCATTTCGATTATTctaaacttttataaaaaatctgttttaat
ttttgcttcATTGTTTATTTAAGTGAGGTTGAAATAGCGAGATACAAGCT
CTTTGTCTAATCAGTAGACATCCAATTCCCAATGttattcaaaaagtttt
tgaaaagcgAAATCAAGTGACTCAATCATACGAGTTGGGAATATATGAAT
TATGTTCTGCTTTTTTCTGTTCACGCTGTACTTAAGCTCTTTTAAGTTCG
TATTTGTTCGGAGTAGCTTCAGAAAGTTAAAAACCTTTCCCGATTGTACT
TgcattgatatatttttttcttgaggTTAAACTATGAGAACTATAAGACA
GACTCATCTCTTTCATAGAGTGCAGTGAACAAAGTCCTGTGTCAAAATAA
ATcaacaatttttaaaatgacATATATCAAAATGCATTTCATGCATCGAG
ACAAGCGAAAAAGACTGGTGCAAAAACCTTTGAAATACTATCTGAGATTT
TATGTCTATTCTAGGAGCGGCTAAAGTCTTCCCATTCAACCCAAAATGAC
ACTACTAAACAGAAATctcacacttttttttataaNTTTTTCTAGGAGCG
GCAAAAGTCTTTCTTTTCAGCCCAAAATGACACTACTAGACAGAAATctc
acactttttttaaataagaacatctaagattttttaagccttgttgaata
ttcttaactttttgagttttaaagcctgaaattttgtaaacatgttctta
cttattttcaccactttgtgagtattttgtccATTTAGTTGAGTGTCAAA
TTGtccacaaagtcttaaaatgttcttaacttcaagtggccgggtagctc
agtcggtagagcattcgcctaacaatctaagggttgtgggttcgatccct
ggtcaccgccaactcagcggatgtaatcagtaatctgatctaggcggtaa
gttactgggagctgagagtaggtgtggcgctccacctcagcattcgatct
ctaGCGCAgttagaaaaggggatagactccctcactccctgCTCccccga
cagccaccagatgaatatacttacttactacttgttatgcttttagccat
ccgagccttatgttcttacatagtttgttctcagCAAAAAATGTGTATCA
ATCTTTCACTTTGTCGATTTTGTGTCCTTAGAACCGTCATAAAATGTGGA
GATAAGATTCGCTTGCAACATTTGGCAACCAAACGTAATTTACACAGTCA
TTTCTTCCAAAGTCCTATCACGCATAACCAAGAAGTCAGCGCTTTTGGAG
AGGGAGGAGATGGAGATTCTGGTGAGTTGGATTCTAGGCTTGCTTTCAAC
CACATAGACAGTTTCATGTAATTTAACAACGAAGGTCGAATTAGATTTTA
CAAATCAACTTCTACGCTTTGCCCATTTTCACCAAATATTGTAATTTCCT
TGAAAATCCTGATTACAATGTTTGGTTTTGCAGGGCA Coding sequence (CDS) from alignment at sc0000261:2460..15146+ >TCONS_00017214 ID=TCONS_00017214|Name=TCONS_00017214|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0000261:2460..15146+ (Clytia hemisphaerica)
aTGAAGCCTTCAAAGGCTTTTTATTGCTTGCTTCAGTTCATTTTGTTACA
AATTGTCAGATGTAAAGATGAATTCCAACATGTGACATGTGGTTCatcat
tgaaattatttaacaatagacaaaacatacgattacATTCTCATGACGTC
AAATATGGATCAGGAAGTGGTCAAcagTCTGTCACTGGTTCACGAAGTGC
TGATGATCAAAACAGTTATTGGATTGTTCGAGGAAGACATGGTCAGAAAT
GCGATCGAGGAACCGTCATAAAATGTGGAGATAAGATTCGCTTGCAACAT
TTGGCAACCAAACGTAATTTACACAGTCATTTCTTCCAAAGTCCTATCAC
GCATAACCAAGAAGTCAGCGCTTTTGGAGAGGGAGGAGATGGAGATTCTG
GTGAGTTGGATTCTAGGCTTGCTTTCAACCACATAGACAGTTTCATGTAA
aTGAAGCCTTCAAAGGCTTTTTATTGCTTGCTTCAGTTCATTTTGTTACA
AATTGTCAGATGTAAAGATGAATTCCAACATGTGACATGTGGTTCatcat
tgaaattatttaacaatagacaaaacatacgattacATTCTCATGACGTC
AAATATGGATCAGGAAGTGGTCAAcagTCTGTCACTGGTTCACGAAGTGC
TGATGATCAAAACAGTTATTGGATTGTTCGAGGAAGACATGGTCAGAAAT
GCGATCGAGGAACCGTCATAAAATGTGGAGATAAGATTCGCTTGCAACAT
TTGGCAACCAAACGTAATTTACACAGTCATTTCTTCCAAAGTCCTATCAC
GCATAACCAAGAAGTCAGCGCTTTTGGAGAGGGAGGAGATGGAGATTCTG
GTGAGTTGGATTCTAGGCTTGCTTTCAACCACATAGACAGTTTCATGTAA
aTGAAGCCTTCAAAGGCTTTTTATTGCTTGCTTCAGTTCATTTTGTTACA
AATTGTCAGATGTAAAGATGAATTCCAACATGTGACATGTGGTTCatcat
tgaaattatttaacaatagacaaaacatacgattacATTCTCATGACGTC
AAATATGGATCAGGAAGTGGTCAAcagTCTGTCACTGGTTCACGAAGTGC
TGATGATCAAAACAGTTATTGGATTGTTCGAGGAAGACATGGTCAGAAAT
GCGATCGAGGAACCGTCATAAAATGTGGAGATAAGATTCGCTTGCAACAT
TTGGCAACCAAACGTAATTTACACAGTCATTTCTTCCAAAGTCCTATCAC
GCATAACCAAGAAGTCAGCGCTTTTGGAGAGGGAGGAGATGGAGATTCTG
GTGAGTTGGATTCTAGGCTTGCTTTCAACCACATAGACAGTTTCATGTAA
aTGAAGCCTTCAAAGGCTTTTTATTGCTTGCTTCAGTTCATTTTGTTACA
AATTGTCAGATGTAAAGATGAATTCCAACATGTGACATGTGGTTCatcat
tgaaattatttaacaatagacaaaacatacgattacATTCTCATGACGTC
AAATATGGATCAGGAAGTGGTCAAcagTCTGTCACTGGTTCACGAAGTGC
TGATGATCAAAACAGTTATTGGATTGTTCGAGGAAGACATGGTCAGAAAT
GCGATCGAGGAACCGTCATAAAATGTGGAGATAAGATTCGCTTGCAACAT
TTGGCAACCAAACGTAATTTACACAGTCATTTCTTCCAAAGTCCTATCAC
GCATAACCAAGAAGTCAGCGCTTTTGGAGAGGGAGGAGATGGAGATTCTG
GTGAGTTGGATTCTAGGCTTGCTTTCAACCACATAGACAGTTTCATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017214-exon-sc0000261-1491911889:2460..2648 | TCONS_00017214-exon-sc0000261-1491911889:2460..2648 | Clytia hemisphaerica | exon |
| TCONS_00017214-exon-sc0000261-1510915933:2460..2648 | TCONS_00017214-exon-sc0000261-1510915933:2460..2648 | Clytia hemisphaerica | exon |
| TCONS_00017214-exon-sc0000261-1575043694:2460..2648 | TCONS_00017214-exon-sc0000261-1575043694:2460..2648 | Clytia hemisphaerica | exon |
| TCONS_00017214-exon-sc0000261-1491911889:10189..10295 | TCONS_00017214-exon-sc0000261-1491911889:10189..10295 | Clytia hemisphaerica | exon |
| TCONS_00017214-exon-sc0000261-1510915933:10189..10295 | TCONS_00017214-exon-sc0000261-1510915933:10189..10295 | Clytia hemisphaerica | exon |
| TCONS_00017214-exon-sc0000261-1575043694:10189..10295 | TCONS_00017214-exon-sc0000261-1575043694:10189..10295 | Clytia hemisphaerica | exon |
| TCONS_00017214-exon-sc0000261-1491911889:13463..13545 | TCONS_00017214-exon-sc0000261-1491911889:13463..13545 | Clytia hemisphaerica | exon |
| TCONS_00017214-exon-sc0000261-1510915933:13463..13545 | TCONS_00017214-exon-sc0000261-1510915933:13463..13545 | Clytia hemisphaerica | exon |
| TCONS_00017214-exon-sc0000261-1575043694:13463..13545 | TCONS_00017214-exon-sc0000261-1575043694:13463..13545 | Clytia hemisphaerica | exon |
| TCONS_00017214-exon-sc0000261-1491911889:14841..15146 | TCONS_00017214-exon-sc0000261-1491911889:14841..15146 | Clytia hemisphaerica | exon |
| TCONS_00017214-exon-sc0000261-1510915933:14841..15146 | TCONS_00017214-exon-sc0000261-1510915933:14841..15146 | Clytia hemisphaerica | exon |
| TCONS_00017214-exon-sc0000261-1575043694:14841..15146 | TCONS_00017214-exon-sc0000261-1575043694:14841..15146 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000261 | supercontig | sc0000261:2460..15146 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016093 | MIR_motif |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
Blast
BLAST of TCONS_00017214 vs. Swiss-Prot (Human)
Match: SDF2 (Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.407e-32 Identity = 67/98 (68.37%), Postives = 76/98 (77.55%), Query Frame = 3
Query: 201 VTCGSSLKLFNNRQNIRLHSHDVKYXXXXXXXXXXXXXXADDQNSYWIVRGRHGQKCDRGTVIKCGDKIRLQHLATKRNLHSHFFQSPITHNQEVSAF 494
VTCGS +KL N R N+RLHSHDV+YGSGSGQQSVTG S DD NSYW +RG+ C+RGT IKCG IRL H+ T RNLHSH F SP++ NQEVSAF
Sbjct: 24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAF 121
The following BLAST results are available for this feature:
|
