TCONS_00017306 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017306
Unique NameTCONS_00017306
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2972

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017306 ID=TCONS_00017306|Name=TCONS_00017306|organism=Clytia hemisphaerica|type=transcript|length=2972bp
CGGGAAGGCTGTAAACAAAAGAGAACAGGCTAGATAATTAGTTCCCAGCC
CCCGCTTTTGGACGATTCGATTGGTCGAAAATGATGTAATGGAATGAGAG
AAAAACAGACATCTTGCTTGCTTCGAAGGAATATTCAAATTCTTGGTGAC
TTGATTCTCAGAAACTTGGTATTTAAAAGCCTCACTTCTTTACTCGTATT
CATTCGATTTTGTCACTCTGATAGTCAATTGACACATAAATTTCAACTAG
AAATACTtattttgctgctggtttattTTCAACTTAGTAGCATCTATCCA
AATCACTTAGGACTCATTCCAATTTTTGTCGTTTTgagacaaattttttt
ttaacactttcgAAATTTAAAAGAACTCTGGAGTTTTAGTGATGAGCACT
GCTTTGACTATGATGCCATGTGGGAATATATTTGCAAACGGTGGAAACAA
AGGCTATAAATGCACTGCGGTTAATAGTATTTTACCTTGTGATCTGGCTC
AAGAAATTGAGAAAAGGAGCTTTGTAATGGACAATACTTGCAATACCCAG
AGCTTCATCAGAACTTCTAGTGAACCCTTTATGATCTTAGACTGTCGTTC
GTTTTTGGCATACAATTTTAAACATATATCAGGAGCTATTAATGTGAATT
GTACAAATAATCTCATGAAAAAACGTTTACAACAAGGGAAAATAACGCTG
GTTGATCTTGTGAATTCGGAATatgaaaaagaatgtttacgTACTGGTTC
CTGGGCCAAAGCAGTAGTTTACGATGATTGCACATCAGAGCTAGAGAAAA
TGCCAGCATCACATCCTGTTAAACTAGTTTTATCTTCTCTTCTTCATGAT
GGCAAAgaagcatttttattaaaaGGTGGATTAAAGGAATTTTCACAATG
CTACAAGAATCTACTATCAGATCATGCAGTTGCAGAGGACAATAATGAAA
ATGTTTCAAGTGCAATCGAACGTATCAATACTCttactaaaattcaaaaa
gatatTTCAGAACGCCCAAATCCAGGTTGTCCACTTAATGTACGAGCAAC
TGAAGTTATCCCTGGGGTATTTCTCGGAAATGCTAGTGATGCCATGGATT
ATAACtttctaaataaaaacaatatcacatatgttcttaacttgacTTGC
CAATGTCCCAATCATTTCATCCAAGACTCACGGTTCCACTACAAGCAGAT
CAAAATTGAAGATTCTTGTCGTGAAAATATTGCAGATATTCTTGCTGATG
CATTACAGTTTATAGaATCAGCAAGAGAAAATCGTTCCTCTGTATTGGTT
CATTGTCAAGGAGGAGTATCCCGATCGCCTACTGTCGTAATCTCATTTTT
AATGCATCTTAAAAAACTGTCCCTAACAGAAGCATATCAATTTGTTAAAG
AAAAACGTCCTTGCATAGCTCCAAATCTCAATTTCATGGGTCAACTCCTT
CAACTGGAAATGAAAAACCGAGGCTTGGAGCCAAAATGTTTTGACAAAGA
AGAAGTTTTGAAAACTATTGGAGGATGTTGTAAGCTTGACTTAGGAAACT
AAATTGGTGTTGAGATCTTTTCTTAgctcttttttttattctacTTTCTG
GGAAAAAAgctatttactttttctttccttCAGAGCTTTTATCTTGAGTT
TAATTCTGCTTCAACATTGAAATATTAGAATGGaggtattttgagttttt
tttcgaaaatctatacGCTTTGATTCTTTTACTTCAGTTTACTTCACCTA
TTCTATGCCCTCTCCAAAACTTtggtttttttcttattttttacatGCTT
CTTGAATtccatttttgtagttttttgaaTCTGGTGTTAGTTTGTTGCAA
TTTTATCCTATTCGTCCTATACTTTTAGAGCAGCTAGTCAAGACTTTAAG
AGTCCAAAGATTAAATTTGAGTATTTAGAAATCAGGAATAACACTAAAGG
AATTCTCTACACATAGAATAATATTTTTAGAGGAGTTACGACATGATTAA
GGATTCTCTTCGAACCTGACAAATTACTTTTCCGTTTTTTGAGAggaaac
aattttattttgctttcagtgcataaaaattgttttattttatgctgact
ttctgttcttataacaTTATTAATCATGAATTAAGGAACGGCGACGCGAC
AATAAACTATGCACGCGCGGGCGTTTTTTCCGtttgttgaaaaaaagtga
TCTGATCAGCATAATTTTTTGGAGCAAAGCATGTTAATTGTGGTGGTGAT
GTAACTTAACCTATTATCTTGTTTTGTTATTAAAAAGTTAAGTTCTGATG
AACTTTTAGAAACCCTTTTTTGATAATATAGGATTTCGATTCTATTATTA
CATCATTGGAGATCTTCTTAAATAGTTACGACTTGATCAGAATTTAATTT
GAATGACGACCCTTGGACTCACTCAGCAATTTTAACAACTATTTTTTCTT
CTAACCTAGTCTGTTGTTCTTACTCATCTTAGGTTAGGTAATAGAATAAA
ATATTAACAAATTTATTTGTAGCTAGTATAAAGATTATTATCAGTCCATG
AAATGGGactaaaattattatttttttgccttattttggCAGTGTGAATA
TGTATGATAGAATGAAAAAATGTACATAGAATTTCTCCTTGTAAGGAACG
AAGCCTTCAATGGTGCTTTTATAACATATtaatggtaaaaaaaattggtt
taaataTATTGCGTTTTGACGAGTAAATATTATTATCATTTCTCTTTACT
TTGGACGTTTTAATAGACCCTTGATTTTGAAAGTTATTTCAGAAGATACA
CCATCATTAATCATCTTTGAGAGAAAATAGAGCCATCATCATAAATTCAA
AGATGATTAAAAAGTACTTTCGCCTTTGGTTATGtggtttttttctttca
aattgtcTGATATTCCGGCCcatgaatttgaattttctgTTTGTGTCATT
GATTTTTCAATGTTTCTCTTCA
Run BLAST on NCBI

protein sequence of TCONS_00017306-protein

>TCONS_00017306-protein ID=TCONS_00017306-protein|Name=TCONS_00017306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
MSTALTMMPCGNIFANGGNKGYKCTAVNSILPCDLAQEIEKRSFVMDNTC
NTQSFIRTSSEPFMILDCRSFLAYNFKHISGAINVNCTNNLMKKRLQQGK
ITLVDLVNSEYEKECLRTGSWAKAVVYDDCTSELEKMPASHPVKLVLSSL
LHDGKEAFLLKGGLKEFSQCYKNLLSDHAVAEDNNENVSSAIERINTLTK
IQKDISERPNPGCPLNVRATEVIPGVFLGNASDAMDYNFLNKNNITYVLN
LTCQCPNHFIQDSRFHYKQIKIEDSCRENIADILADALQFIESARENRSS
VLVHCQGGVSRSPTVVISFLMHLKKLSLTEAYQFVKEKRPCIAPNLNFMG
QLLQLEMKNRGLEPKCFDKEEVLKTIGGCCKLDLGN
Run BLAST on NCBI

transcript from alignment at sc0000264:187327..190641-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017306 ID=TCONS_00017306|Name=TCONS_00017306|organism=Clytia hemisphaerica|type=transcript|length=3315bp|location=Sequence derived from alignment at sc0000264:187327..190641- (Clytia hemisphaerica)
CGGGAAGGCTGTAAACAAAAGAGAACAGGCTAGATAATTAGTTCCCAGCC
CCCGCTTTTGGACGATTCGATTGGTCGAAAATGATGTAATGGAATGAGAG
AAAAACAGACATCTTGCTTGCTTCGAAGGAATATTCAAATTCTTGGTGAC
TTGATTCTCAGAAACTTGGTATTTAAAAGCCTCACTTCTTTACTCGTATT
CATTCGATTTTGTCACTCTGATAGTCAATTGACACATAAATTTCAACTAG
AAATACTTATTTTGCTGCTGGTTTATTTTCAACTTAGTAGCATCTATCCA
AATCACTTAGGACTCATTCCAATTTTTGTCGTTTTGAGACAAATTTTTTT
TTAACACTTTCGAAATTTAAAAGAACTCTGGAGTTTTAGTGATGAGCACT
GCTTTGACTATGATGCCATGTGGGAATATATTTGCAAACGGTGGAAACAA
AGGCTATAAATGCACTGCGGTTAATAGTATTTTACCTTGTGATCTGGCTC
AAGAAATTGAGAAAAGGAGCTTTGTAATGGACAATACTTGCAATACCCAG
AGCTTCATCAGAACTTCTAGTGAACCCTTTATGATCTTAGACTGTCGTTC
GTTTTTGGCATACAATTTTAAACATATATCAGGAGCTATTAATGTGAATT
GTACAAATAATCTCATGAAAAAACGTTTACAACAAGGGAAAATAACGCTG
GTTGATCTTGTGAATTCGGAATATGAAAAAGAATGTTTACGTACTGGTTC
CTGGGCCAAAGCAGTAGTTTACGATGATTGCACATCAGAGCTAGAGAAAA
TGCCAGCATCACATCCTGTTAAACTAGTTTTATCTTCTCTTCTTCATGAT
GGCAAAGAAGCATTTTTATTAAAAGGTAAGAATAAAGCCACATTAAAAAC
CTATAAGCTTTTCAAATTTAGCTGAAACAGTCTTCTAAATCACAGTCTTC
TGTGCTTTTTAAAATTATATGTGTATACAGACTTGGCCATTTATAATAAT
GAGATATTAAAATTAAAATTATTTTAAGATTGAAAATAACCTTCTCCATT
TTTGTTCGTCATAGGTGGATTAAAGGAATTTTCACAATGCTACAAGAATC
TACTATCAGATCATGCAGTTGCAGAGGACAATAATGAAAATGTTTCAAGT
GCAATCGAACGTATCAATACTCTTACTAAAATTCAAAAAGATATTTCAGA
ACGCCCAAATCCAGGTTGTCCACTTAATGTACGAGCAACTGAAGTTATCC
CTGGGGTATTTCTCGGAAATGCTAGTGATGCCATGGATTATAACTTTCTA
AATAAAAACAATATCACATATGTTCTTAACTTGACTTGCCAATGTCCCAA
TCATTTCATCCAAGACTCACGGTTCCACTACAAGCAGATCAAAATTGAAG
ATTCTTGTCGTGAAAATATTGCAGATATTCTTGCTGATGCATTACAGTTT
ATAGGTAAATATTCTCAAAAGTATCTTTGAATGATTTCTGAGAGAAAAAT
TTGCTTTGAAATGTCACAAATATCTTATGAGGGAAACAACATTTGTTTTA
CAGTCTAAAACTATTTGGTTTTTCCAAGTTTGACAATTTATTTTATTTTG
AATTTCAGAATCAGCAAGAGAAAATCGTTCCTCTGTATTGGTTCATTGTC
AAGGAGGAGTATCCCGATCGCCTACTGTCGTAATCTCATTTTTAATGCAT
CTTAAAAAACTGTCCCTAACAGAAGCATATCAATTTGTTAAAGAAAAACG
TCCTTGCATAGCTCCAAATCTCAATTTCATGGGTCAACTCCTTCAACTGG
AAATGAAAAACCGAGGCTTGGAGCCAAAATGTTTTGACAAAGAAGAAGTT
TTGAAAACTATTGGAGGATGTTGTAAGCTTGACTTAGGAAACTAAATTGG
TGTTGAGATCTTTTCTTAGCTCTTTTTTTTATTCTACTTTCTGGGAAAAA
AGCTATTTACTTTTTCTTTCCTTCAGAGCTTTTATCTTGAGTTTAATTCT
GCTTCAACATTGAAATATTAGAATGGAGGTATTTTGAGTTTTTTTTCGAA
AATCTATACGCTTTGATTCTTTTACTTCAGTTTACTTCACCTATTCTATG
CCCTCTCCAAAACTTTGGTTTTTTTCTTATTTTTTACATGCTTCTTGAAT
TCCATTTTTGTAGTTTTTTGAATCTGGTGTTAGTTTGTTGCAATTTTATC
CTATTCGTCCTATACTTTTAGAGCAGCTAGTCAAGACTTTAAGAGTCCAA
AGATTAAATTTGAGTATTTAGAAATCAGGAATAACACTAAAGGAATTCTC
TACACATAGAATAATATTTTTAGAGGAGTTACGACATGATTAAGGATTCT
CTTCGAACCTGACAAATTACTTTTCCGTTTTTTGAGAGGAAACAATTTTA
TTTTGCTTTCAGTGCATAAAAATTGTTTTATTTTATGCTGACTTTCTGTT
CTTATAACATTATTAATCATGAATTAAGGAACGGCGACGCGACAATAAAC
TATGCACGCGCGGGCGTTTTTTCCGTTTGTTGAAAAAAAGTGATCTGATC
AGCATAATTTTTTGGAGCAAAGCATGTTAATTGTGGTGGTGATGTAACTT
AACCTATTATCTTGTTTTGTTATTAAAAAGTTAAGTTCTGATGAACTTTT
AGAAACCCTTTTTTGATAATATAGGATTTCGATTCTATTATTACATCATT
GGAGATCTTCTTAAATAGTTACGACTTGATCAGAATTTAATTTGAATGAC
GACCCTTGGACTCACTCAGCAATTTTAACAACTATTTTTTCTTCTAACCT
AGTCTGTTGTTCTTACTCATCTTAGGTTAGGTAATAGAATAAAATATTAA
CAAATTTATTTGTAGCTAGTATAAAGATTATTATCAGTCCATGAAATGGG
ACTAAAATTATTATTTTTTTGCCTTATTTTGGCAGTGTGAATATGTATGA
TAGAATGAAAAAATGTACATAGAATTTCTCCTTGTAAGGAACGAAGCCTT
CAATGGTGCTTTTATAACATATTAATGGTAAAAAAAATTGGTTTAAATAT
ATTGCGTTTTGACGAGTAAATATTATTATCATTTCTCTTTACTTTGGACG
TTTTAATAGACCCTTGATTTTGAAAGTTATTTCAGAAGATACACCATCAT
TAATCATCTTTGAGAGAAAATAGAGCCATCATCATAAATTCAAAGATGAT
TAAAAAGTACTTTCGCCTTTGGTTATGTGGTTTTTTTCTTTCAAATTGTC
TGATATTCCGGCCCATGAATTTGAATTTTCTGTTTGTGTCATTGATTTTT
CAATGTTTCTCTTCA

Coding sequence (CDS) from alignment at sc0000264:187327..190641-

>TCONS_00017306 ID=TCONS_00017306|Name=TCONS_00017306|organism=Clytia hemisphaerica|type=CDS|length=3483bp|location=Sequence derived from alignment at sc0000264:187327..190641- (Clytia hemisphaerica)
AATCAGCAAGAGAAAATCGTTCCTCTGTATTGGTTCATTGTCAAGGAGGA
GTATCCCGATCGCCTACTGTCGTAATCTCATTTTTAATGCATCTTAAAAA
ACTGTCCCTAACAGAAGCATATCAATTTGTTAAAGAAAAACGTCCTTGCA
TAGCTCCAAATCTCAATTTCATGGGTCAACTCCTTCAACTGGAAATGAAA
AACCGAGGCTTGGAGCCAAAATGTTTTGACAAAGAAGAAGTTTTGAAAAC
TATTGGAGGATGTTGTAAGCTTGACTTAGGAAACTAAGTGGATTAAAGGA
ATTTTCACAATGCTACAAGAATCTACTATCAGATCATGCAGTTGCAGAGG
ACAATAATGAAAATGTTTCAAGTGCAATCGAACGTATCAATACTCTTACT
AAAATTCAAAAAGATATTTCAGAACGCCCAAATCCAGGTTGTCCACTTAA
TGTACGAGCAACTGAAGTTATCCCTGGGGTATTTCTCGGAAATGCTAGTG
ATGCCATGGATTATAACTTTCTAAATAAAAACAATATCACATATGTTCTT
AACTTGACTTGCCAATGTCCCAATCATTTCATCCAAGACTCACGGTTCCA
CTACAAGCAGATCAAAATTGAAGATTCTTGTCGTGAAAATATTGCAGATA
TTCTTGCTGATGCATTACAGTTTATAGATGAGCACTGCTTTGACTATGAT
GCCATGTGGGAATATATTTGCAAACGGTGGAAACAAAGGCTATAAATGCA
CTGCGGTTAATAGTATTTTACCTTGTGATCTGGCTCAAGAAATTGAGAAA
AGGAGCTTTGTAATGGACAATACTTGCAATACCCAGAGCTTCATCAGAAC
TTCTAGTGAACCCTTTATGATCTTAGACTGTCGTTCGTTTTTGGCATACA
ATTTTAAACATATATCAGGAGCTATTAATGTGAATTGTACAAATAATCTC
ATGAAAAAACGTTTACAACAAGGGAAAATAACGCTGGTTGATCTTGTGAA
TTCGGAATATGAAAAAGAATGTTTACGTACTGGTTCCTGGGCCAAAGCAG
TAGTTTACGATGATTGCACATCAGAGCTAGAGAAAATGCCAGCATCACAT
CCTGTTAAACTAGTTTTATCTTCTCTTCTTCATGATGGCAAAGAAGCATT
TTTATTAAAAGAATCAGCAAGAGAAAATCGTTCCTCTGTATTGGTTCATT
GTCAAGGAGGAGTATCCCGATCGCCTACTGTCGTAATCTCATTTTTAATG
CATCTTAAAAAACTGTCCCTAACAGAAGCATATCAATTTGTTAAAGAAAA
ACGTCCTTGCATAGCTCCAAATCTCAATTTCATGGGTCAACTCCTTCAAC
TGGAAATGAAAAACCGAGGCTTGGAGCCAAAATGTTTTGACAAAGAAGAA
GTTTTGAAAACTATTGGAGGATGTTGTAAGCTTGACTTAGGAAACTAAGT
GGATTAAAGGAATTTTCACAATGCTACAAGAATCTACTATCAGATCATGC
AGTTGCAGAGGACAATAATGAAAATGTTTCAAGTGCAATCGAACGTATCA
ATACTCTTACTAAAATTCAAAAAGATATTTCAGAACGCCCAAATCCAGGT
TGTCCACTTAATGTACGAGCAACTGAAGTTATCCCTGGGGTATTTCTCGG
AAATGCTAGTGATGCCATGGATTATAACTTTCTAAATAAAAACAATATCA
CATATGTTCTTAACTTGACTTGCCAATGTCCCAATCATTTCATCCAAGAC
TCACGGTTCCACTACAAGCAGATCAAAATTGAAGATTCTTGTCGTGAAAA
TATTGCAGATATTCTTGCTGATGCATTACAGTTTATAGATGAGCACTGCT
TTGACTATGATGCCATGTGGGAATATATTTGCAAACGGTGGAAACAAAGG
CTATAAATGCACTGCGGTTAATAGTATTTTACCTTGTGATCTGGCTCAAG
AAATTGAGAAAAGGAGCTTTGTAATGGACAATACTTGCAATACCCAGAGC
TTCATCAGAACTTCTAGTGAACCCTTTATGATCTTAGACTGTCGTTCGTT
TTTGGCATACAATTTTAAACATATATCAGGAGCTATTAATGTGAATTGTA
CAAATAATCTCATGAAAAAACGTTTACAACAAGGGAAAATAACGCTGGTT
GATCTTGTGAATTCGGAATATGAAAAAGAATGTTTACGTACTGGTTCCTG
GGCCAAAGCAGTAGTTTACGATGATTGCACATCAGAGCTAGAGAAAATGC
CAGCATCACATCCTGTTAAACTAGTTTTATCTTCTCTTCTTCATGATGGC
AAAGAAGCATTTTTATTAAAAGAATCAGCAAGAGAAAATCGTTCCTCTGT
ATTGGTTCATTGTCAAGGAGGAGTATCCCGATCGCCTACTGTCGTAATCT
CATTTTTAATGCATCTTAAAAAACTGTCCCTAACAGAAGCATATCAATTT
GTTAAAGAAAAACGTCCTTGCATAGCTCCAAATCTCAATTTCATGGGTCA
ACTCCTTCAACTGGAAATGAAAAACCGAGGCTTGGAGCCAAAATGTTTTG
ACAAAGAAGAAGTTTTGAAAACTATTGGAGGATGTTGTAAGCTTGACTTA
GGAAACTAAGTGGATTAAAGGAATTTTCACAATGCTACAAGAATCTACTA
TCAGATCATGCAGTTGCAGAGGACAATAATGAAAATGTTTCAAGTGCAAT
CGAACGTATCAATACTCTTACTAAAATTCAAAAAGATATTTCAGAACGCC
CAAATCCAGGTTGTCCACTTAATGTACGAGCAACTGAAGTTATCCCTGGG
GTATTTCTCGGAAATGCTAGTGATGCCATGGATTATAACTTTCTAAATAA
AAACAATATCACATATGTTCTTAACTTGACTTGCCAATGTCCCAATCATT
TCATCCAAGACTCACGGTTCCACTACAAGCAGATCAAAATTGAAGATTCT
TGTCGTGAAAATATTGCAGATATTCTTGCTGATGCATTACAGTTTATAGA
TGAGCACTGCTTTGACTATGATGCCATGTGGGAATATATTTGCAAACGGT
GGAAACAAAGGCTATAAATGCACTGCGGTTAATAGTATTTTACCTTGTGA
TCTGGCTCAAGAAATTGAGAAAAGGAGCTTTGTAATGGACAATACTTGCA
ATACCCAGAGCTTCATCAGAACTTCTAGTGAACCCTTTATGATCTTAGAC
TGTCGTTCGTTTTTGGCATACAATTTTAAACATATATCAGGAGCTATTAA
TGTGAATTGTACAAATAATCTCATGAAAAAACGTTTACAACAAGGGAAAA
TAACGCTGGTTGATCTTGTGAATTCGGAATATGAAAAAGAATGTTTACGT
ACTGGTTCCTGGGCCAAAGCAGTAGTTTACGATGATTGCACATCAGAGCT
AGAGAAAATGCCAGCATCACATCCTGTTAAACTAGTTTTATCTTCTCTTC
TTCATGATGGCAAAGAAGCATTTTTATTAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009683XLOC_009683Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017306-proteinTCONS_00017306-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017306-exon-sc0000264-1575043694:189767..190641TCONS_00017306-exon-sc0000264-1575043694:189767..190641Clytia hemisphaericaexon
TCONS_00017306-exon-sc0000264-1575043694:189188..189577TCONS_00017306-exon-sc0000264-1575043694:189188..189577Clytia hemisphaericaexon
TCONS_00017306-exon-sc0000264-1575043694:187327..189033TCONS_00017306-exon-sc0000264-1575043694:187327..189033Clytia hemisphaericaexon
TCONS_00017306-exon-sc0000264-1510915933:189767..190641TCONS_00017306-exon-sc0000264-1510915933:189767..190641Clytia hemisphaericaexon
TCONS_00017306-exon-sc0000264-1510915933:189188..189577TCONS_00017306-exon-sc0000264-1510915933:189188..189577Clytia hemisphaericaexon
TCONS_00017306-exon-sc0000264-1510915933:187327..189033TCONS_00017306-exon-sc0000264-1510915933:187327..189033Clytia hemisphaericaexon
TCONS_00017306-exon-sc0000264-1491911889:189767..190641TCONS_00017306-exon-sc0000264-1491911889:189767..190641Clytia hemisphaericaexon
TCONS_00017306-exon-sc0000264-1491911889:189188..189577TCONS_00017306-exon-sc0000264-1491911889:189188..189577Clytia hemisphaericaexon
TCONS_00017306-exon-sc0000264-1491911889:187327..189033TCONS_00017306-exon-sc0000264-1491911889:187327..189033Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:187327..190641 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.3811	13.7359	19.3507	21.1932	88.1031	64.3385	44.2255	48.0181	49.73	206.079	124.99	201.543	90.5206	64.696	116.542	128.471	41.7858	67.4002	206.231	119.594	136.574	248.226	18.5797	22.0582	26.2762	29.775	242.936	258.591	184.132	149.66
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008343MKP
IPR020422TYR_PHOSPHATASE_DUAL_dom
IPR001763Rhodanese-like_dom
IPR000340Dual-sp_phosphatase_cat-dom
IPR029021Prot-tyrosine_phosphatase-like
IPR016130Tyr_Pase_AS
IPR000387TYR_PHOSPHATASE_dom
Vocabulary: Biological Process
TermDefinition
GO:0006470protein dephosphorylation
GO:0016311dephosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0017017MAP kinase tyrosine/serine/threonine phosphatase activity
GO:0008138protein tyrosine/serine/threonine phosphatase activity
GO:0004725protein tyrosine phosphatase activity
GO:0016791phosphatase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016311 dephosphorylation
biological_process GO:0006470 protein dephosphorylation
molecular_function GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity
molecular_function GO:0016791 phosphatase activity
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
Blast
[Close]
BLAST of TCONS_00017306 vs. Swiss-Prot (Human)
Match: DUS10 (Dual specificity protein phosphatase 10 OS=Homo sapiens GN=DUSP10 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.027e-61
Identity = 127/345 (36.81%), Postives = 202/345 (58.55%), Query Frame = 2 
Query:  467 AVNSILPCDLAQEIEKRSFVMDNTCNTQSFIRTSSEPFMILDCRSFLAYNFKHISGAINVNCTNNLMKKRLQQGKITLVDLVNSEYEKECLRTGSWAKAVVYDDCTSELEKMPASHPVKLVLSSLLHDGKEAFLLKGGLKEFSQCYKNLLSDHAVAEDNNENVSSAIERINTLTKIQKDISERPNPGCP--LNVRATEVIPGVFLGNASDAMDYNFLNKNNITYVLNLTCQCPNHFIQDSRFHYKQIKIEDSCRENIADILADALQFIESARENRSSVLVHCQGGVSRSPTVVISFLMHLKKLSLTEAYQFVKEKRPCIAPNLNFMGQLLQLEMK-NRGLEPKCF 1492
            ++  I P DLA+++ K        C+        S+  +I+DCR F+ YN  HI GA+++NC + + ++RLQQGKIT++DL++    K+  +     + +VYD+ T+E  ++  S P+ +VL SL  +GKE  +LKGGL  F Q ++NL  D+++       V       ++L         +P P  P   N   T ++P +FLGN  DA D + + + NI YV+N+T   P +  +   F+YK++   DS ++N+     +A +FIE A +    +L+HCQ GVSRS T+VI++LM   ++++T+AY+FVK KRP I+PNLNFMGQLL+ E   N G+ P+  
Sbjct:  146 SIKIIYPNDLAKKMTK--------CSKSHL---PSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSSFKQNHENLC-DNSLQLQECREVGGGASAASSLL-------PQPIPTTPDIENAELTPILPFLFLGNEQDAQDLDTMQRLNIGYVINVTTHLPLYHYEKGLFNYKRLPATDSNKQNLRQYFEEAFEFIEEAHQCGKGLLIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISPNLNFMGQLLEFEEDLNNGVTPRIL 471
The following BLAST results are available for this feature:
BLAST of TCONS_00017306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS101.027e-6136.81Dual specificity protein phosphatase 10 OS=Homo sa... [more]
back to top