TCONS_00017312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017312
Unique NameTCONS_00017312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017312 ID=TCONS_00017312|Name=TCONS_00017312|organism=Clytia hemisphaerica|type=transcript|length=1225bp
TCACTGCAATGaacattttttgacgtcaattttttattctaaACTTAAAA
ATCAAATCCGTTACTTTCCATACTTTATTTTGGAACTACGAACATATCAA
GAGCAGTCATGGAGCCGAAAACTGAAAGTAATGAGCTTGGTGATGACTCT
TTTAGCATTCTTAATTTCATTGCGGTAATTGCGTTCATACTTGTAATATT
CAAGGTGACATTCAGCTTTTTTATACTACATCTGATAAACTGGCTTTTTA
GACGAAATGATAAGAAACCTGAGCCTAAGACTTTTTTCGAAAACGACCGC
AAAATAATCATGCGTGGACTGGAAAATGAACTGGATGACATTCGAAATTG
TAGCgagaaacatttaaaacaaatgaacaaGAAAATAGATGCTGTTGACG
ACAAAACTAAAAAGACATACGCCCGTATGGAAAAGTACGAAAAAAGTCTG
AATGCCTTTAAGAAGGAGACAACCGAACGATTTCAGCGCATCGAGGGACG
ATTTCAAAAGTTCGAAAGGAGATTCAATAGCACTGATGTgagatttcaaa
aattagaTGATAAGCTCAAGAATTTGGataggaaatttcaaaatttagga
GAGAAATTTGAAGACAAATTAGGAAGTTGTGAAGGAATAATTAATACGAG
AATAGATGGATTAAATGAAAATATCATGCAGCGTATTGACGACCAAATCG
TATCATTCAGCGCGTTATGTGATTTGAACGAAAACATTTTTCCTTATATA
AATGAAGTCCGCAAACAAACTACTAACTCTCGACAGGAACTGAACAATAT
GGAAAAGAGGTTATTACTTTCCTGTCTCTGTGGCATTATGTCGAAAACTT
GGTGGGTTTTCTAAATTGTTGAATTCACTAAGaaataaAAACCGAACACT
AGAGCAAGATGAACGTCAGAAACTTTCAATAGAAGCGTTTAGGACCGGGA
TGTCGTGTGCGTACACAATGAACTATTCAACCCCTCCACCTTCAGTCACC
AGCTTTCACCCATCAGAATCATCACTTGATACATCCCTCACCAACAACTC
CTCTGGAAGTCAACGCAAGGCGTCCACCTCCACCACTCAACCACCTTCCA
CTACCACAAACAACAAATAGTACACGACATTTCGGTCAACATCCTTCGTA
TATCGGCTTTTTTGTAATTAGAAAATTCtatatgaaaatgaaataaatat
attttacacTTTTTCTACACGAATG
Run BLAST on NCBI

transcript from alignment at sc0000264:297978..300815-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017312 ID=TCONS_00017312|Name=TCONS_00017312|organism=Clytia hemisphaerica|type=transcript|length=2838bp|location=Sequence derived from alignment at sc0000264:297978..300815- (Clytia hemisphaerica)
TCACTGCAATGAACATTTTTTGACGTCAATTTTTTATTCTAAACTTAAAA
ATCAAATCCGTTACTTTCCATACTTTATTTTGGAACTACGAACATATCAA
GAGCAGTCATGGAGCCGAAAACTGAAAGTAATGAGCTTGGTGATGACTCT
TTTAGCATTCTTAATTTCATTGCGGTAATTGCGTTCATACTTGTAATATT
CAAGGTGACATTCAGCTTTTTTATACTACATCTGATAAACTGGCTTTTTA
GACGAAATGATAAGGTAAAAAACTTTGATTGAAATTGATTTACTTTTTGA
AATTCAGCTAGCAATTGAATCTTCCTTTAAAAGATGTTATCGACTTGTTA
CCCCTGTGCAGGGTGTCCTCTGTGATACGTTTTTGAACGTAACAAAATGT
ATTGTATTTTTTACGAAACTATTTTGTTTGAACTTCATTCTTTGTGATAT
TCTATCCTGTCAGACCTGGTCACACCAATTTTCATTTCCACAACTGTATG
TTTCTTTTTATTCTAGAAACCTGAGCCTAAGACTTTTTTCGAAAACGACC
GCAAAATAATCATGCGTGGACTGGAAAATGAACTGGATGACATTCGAAAT
TGTGTAAGAAACTCTTTTCGATAGTATTCCACTAGACAAGTTTTTGCATT
TTCTAAGAAACTCGTCAGCTATTTTATACAAAGCGAAAGGTCTAGGAATA
GTCCATAGTTTATCTGACCAAACGTGTACCAGTTTTGACGGAAATTAGCT
TAGCTTGGTTTTAAGGAGACCTGAGCTGAAAGAGCTGTACGCCGAGAATT
TTTTGAATTTATCCCCTCAAAAGCCCACCGTGCCACGTTAAGAGTTTTTA
GGTGTACATAGGGTTAATATTTCACGCTTTTCACTTTTGCACCTTTAGAG
CGAGAAACATTTAAAACAAATGAACAAGAAAATAGATGCTGTTGACGACA
AAACTAAAAAGACATACGCCCGTATGGAAAAGTACGAAAAAAGTCTGAAT
GCCTTTAAGAAGGAGACAACCGAACGATTTCAGCGCATCGAGGGACGATT
TCAAAAGTTCGAAAGGAGATTCAATAGCACTGATGTGAGATTTCAAAAAT
TAGATGATAAGCTCAAGAATTTGGATAGGAAATTTCAAAATTTAGGAGAG
AAATTTGAAGACAAATTAGGAAGTTGTGAAGGAATAATTAATACGAGAAT
AGATGGATTAAATGAAAATATCATGCAGCGTATTGACGACCAAATCGTAT
CATTCAGCGCGTTATGTGATTTGAACGAAAACATTTTTCCTTATGTAAGT
TATATTTTCCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTGCTAAAAATTTGACGGGTGTAAAGACGAAACT
CTCTGGGTGACAAAGAAACTCAATGAATTTCATTTTTTGGAGTATTACTT
ATCATATTTCAGTATTTTCAAAAGTATAATTTTCTCTCCCTAAGAATCAG
ACCCTCGCCTTGACAAAATAATTAGGCAGTATATCTACTTCTTGTATAGA
AGCTTCTTTTGTTGGTGGCTGAGCAGAATGGTAGTACAAAATTTATTGTA
ATATTTCTTCTCATTTCTAGATAAATGAAGTCCGCAAACAAACTACTAAC
TCTCGACAGGAACTGAACAATATGGAAAAGTAAGATCATCACCTCAATGC
TTGTGTAGATTTTTAAAACATTTTTTGGCTAGAGCCAGATTGGGATCAAG
TGTATTGATCACTCATTCTTTGATACATTGTTTTCAAAATTAATAGGAAA
ACAATGAGTCATAAACGATGAAGCTGAAAATCTAAAATCTAAAAAACTTA
AAATTTTAGGGAGTTTAAGAAGCTGTTAAAGTCAATAAAGAACGATCTGT
AAGTGATTTTCATATTTTTTCATTTCGACCATTTTAGGAGGTTATTACTT
TCCTGTCTCTGTGGCATTATGTCGAAAACTTGGTGGGTTTTCTAAATTGT
TGAATTCACTAAGGTGAGCAAATGAACCTTTTTCGAAAAACTTTTCACAA
GTGGATCTCACTTAGACAACCGTAAGTGGTCCACCTTAGGCTTTAACAAG
GGTGGCCCGCCTAGGCAATCACATTAAAAAAAATCTTGCTGCAGAGCTTC
TGATGGTAATAATTCCTCAATTTTCTCAATACACATCGCTATTTAAAGCT
TTTCAAATAACCGCTTCATGTATGGGTAATAATAATTTTTTTCTTTTTTT
TTCCAGAAATAAAAACCGAACACTAGAGCAAGATGTAAGTTTCCGAGAAA
AGATTATTTTTTTTTCATTTTTCATCTTCACTTTCCAAAATGTTTTTAAG
CTTTTTCTTTGAAATTATAATGCTTTGAATTATCTTTTCAACGGTATAGA
ATATATAAGAGCTGAAGAATATATTAGAGCTGAAGTATTCTTTGAAAAAT
AACAAGGAAATCATCAATCATTAGTGCACACTTGAAACAAACGGACTTTA
AATCTATCCATCTTCTATTTCAGGAACGTCAGAAACTTTCAATAGAAGCG
TTTAGGACCGGGATGTCGTGTGCGTACACAATGAACTATTCAACCCCTCC
ACCTTCAGTCACCAGCTTTCACCCATCAGAATCATCACTTGATACATCCC
TCACCAACAACTCCTCTGGAAGTCAACGCAAGGCGTCCACCTCCACCACT
CAACCACCTTCCACTACCACAAACAACAAATAGTACACGACATTTCGGTC
AACATCCTTCGTATATCGGCTTTTTTGTAATTAGAAAATTCTATATGAAA
ATGAAATAAATATATTTTACACTTTTTCTACACGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009687XLOC_009687Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017312-exon-sc0000264-1575043694:300552..300815TCONS_00017312-exon-sc0000264-1575043694:300552..300815Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1575043694:300213..300299TCONS_00017312-exon-sc0000264-1575043694:300213..300299Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1575043694:299522..299917TCONS_00017312-exon-sc0000264-1575043694:299522..299917Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1575043694:299137..299195TCONS_00017312-exon-sc0000264-1575043694:299137..299195Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1575043694:298803..298878TCONS_00017312-exon-sc0000264-1575043694:298803..298878Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1575043694:298532..298559TCONS_00017312-exon-sc0000264-1575043694:298532..298559Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1575043694:297978..298292TCONS_00017312-exon-sc0000264-1575043694:297978..298292Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1510915933:300552..300815TCONS_00017312-exon-sc0000264-1510915933:300552..300815Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1510915933:300213..300299TCONS_00017312-exon-sc0000264-1510915933:300213..300299Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1510915933:299522..299917TCONS_00017312-exon-sc0000264-1510915933:299522..299917Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1510915933:299137..299195TCONS_00017312-exon-sc0000264-1510915933:299137..299195Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1510915933:298803..298878TCONS_00017312-exon-sc0000264-1510915933:298803..298878Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1510915933:298532..298559TCONS_00017312-exon-sc0000264-1510915933:298532..298559Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1510915933:297978..298292TCONS_00017312-exon-sc0000264-1510915933:297978..298292Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1491911889:300552..300815TCONS_00017312-exon-sc0000264-1491911889:300552..300815Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1491911889:300213..300299TCONS_00017312-exon-sc0000264-1491911889:300213..300299Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1491911889:299522..299917TCONS_00017312-exon-sc0000264-1491911889:299522..299917Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1491911889:299137..299195TCONS_00017312-exon-sc0000264-1491911889:299137..299195Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1491911889:298803..298878TCONS_00017312-exon-sc0000264-1491911889:298803..298878Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1491911889:298532..298559TCONS_00017312-exon-sc0000264-1491911889:298532..298559Clytia hemisphaericaexon
TCONS_00017312-exon-sc0000264-1491911889:297978..298292TCONS_00017312-exon-sc0000264-1491911889:297978..298292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:297978..300815 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7.3653	2.13141	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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