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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017316 ID=TCONS_00017316|Name=TCONS_00017316|organism=Clytia hemisphaerica|type=transcript|length=1200bp
tttatagGATAATTATAAATGGAAATGAATAAATAATGGGCAAAGCATTT
TGGCAAAACaaacataaattatttttcatggCCACACTAATGTTGGCAGT
TGGTTATGTGCTTCTCTCAAAGTCATCCAAACAAGCTAGTAGCAACAAAC
TCTTAACGAAGGATGAGACACCATCCTTTGTTAAGATGTCGTCATGCAAA
CAGAACAACAATGTTTCgattttttatatcaaaatacaaaaaacagGTTC
TAGTACCATAAAAAGCATGTTGCTGAACTAtggattgaagaaaaaaatga
aaatctgcatGGACAATACCGACCTACATCATATGAACTTTCCGTACCAG
ATTGACGAATCAAAACTGGTCAAGAAACCGAATGAGAAATGTCAATTGGT
AGCTGATGAACTAATCTTCCATGAAAAACAAGcacCGAACATGATGTTTG
GTCGTCCGTTGATCATCACCTCCCTACGTGATCCCATCATGCATTTCGTG
TCCATGTACAAATTCACACTGGTCCATTACGCAGTTGAGATGCTTACGTT
ATTAAAACTTGATTTCTGGGATGGTGTTCGCGTGTTTTTGAAGAACCCTG
ATTTAGTTCGTGCAGTTTATAACACGTTTGATCGCGATGAGATCCACGAT
TTCACTTTACAGCAGCTTGTTCGCCCCAACCTCCAAGCGTTCAGTCTCGG
GTTAAATGCTGACTCaacagaaaaagaaattcaatccAAGATTACTAGTA
TTGATCTGGTTATATTGAGTGAACGGTTTTACGAATCGATTCTTTTGTTA
GCTAAACGTTTATgtgttccttttgaagatttggtGTTCGTTCGGCAAAA
TATTAATCATCAAGACTCGACGAGCCGATGGAAAGAAGTTCCCCCAGATG
TGGAAAAATTGATTCGGAAATTTAATGTCGTTGATATTATGCTGTATGAA
AAAGCGAAAGAGAAATTTGAGAATTCTATTCATGCTTATCCCAGAGACGC
GTTAAATCATGATGTTGAGATGTATAAAAACTCTATCAAGAGGTATGCAC
ATAAGTGTGAAAGCATTAAAAAACCTCTCGCCCTGATAGATGGGAATTAT
TGTTTACCTGAGGAAGCATCTTATTTTTATAAGCTCGTTCGCGCGAAATT
ACGGAAAGAGTTGCTTCGCGATTTACAAGAAGAATATAATAAAGAAAATC Run BLAST on NCBI protein sequence of TCONS_00017316-protein >TCONS_00017316-protein ID=TCONS_00017316-protein|Name=TCONS_00017316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
MGKAFWQNKHKLFFMATLMLAVGYVLLSKSSKQASSNKLLTKDETPSFVK
MSSCKQNNNVSIFYIKIQKTGSSTIKSMLLNYGLKKKMKICMDNTDLHHM
NFPYQIDESKLVKKPNEKCQLVADELIFHEKQAPNMMFGRPLIITSLRDP
IMHFVSMYKFTLVHYAVEMLTLLKLDFWDGVRVFLKNPDLVRAVYNTFDR
DEIHDFTLQQLVRPNLQAFSLGLNADSTEKEIQSKITSIDLVILSERFYE
SILLLAKRLCVPFEDLVFVRQNINHQDSTSRWKEVPPDVEKLIRKFNVVD
IMLYEKAKEKFENSIHAYPRDALNHDVEMYKNSIKRYAHKCESIKKPLAL
IDGNYCLPEEASYFYKLVRAKLRKELLRDLQEEYNKEN Run BLAST on NCBI transcript from alignment at sc0000264:353175..359157- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017316 ID=TCONS_00017316|Name=TCONS_00017316|organism=Clytia hemisphaerica|type=transcript|length=5983bp|location=Sequence derived from alignment at sc0000264:353175..359157- (Clytia hemisphaerica)
TTTATAGGATAATTATAAATGGAAATGAATAAATAATGGGCAAAGCATTT
TGGCAAAACAAACATAAATTATTTTTCATGGCCACACTAATGTTGGCAGT
TGGTTATGTGCTTCTCTCAAAGTCATCCAAACAAGCTAGTAGCAACAAAC
TCTTAACGAAGGATGAGACACCATCCTTTGTTAAGATGTCGTCATGCAAA
CAGAACAACAATGTTTCGATTTTTTATATCAAAATACAAAAAACAGGTAA
AATGTTATTTCATAACTTTGTTTCTTTTCTAAAAGTTACTGCACATGTAA
TTTCTATTTTTACAATAATGGCAAATAACAAACCCTTTTTAAATATTTTT
CTTTACCTATAATTATGCACTACGTAATACTCGTACCGTAAGGTCAACAA
TATTCCATAAAATCTCTCTTTCTGTCAATATTTTTCTTATTCATGATATG
CACCATTGCAATGTCTTTTGACATTACATCACAGACCCAATAGCTGATTG
ATTTAAGTGACGTAATATCTGACAATACGTCACTTTCAACCAATCAGCTA
TTGGGTCCGTGGAAGACATTTCAATGGTGCATATCATGAATAATGAAAAT
ATCACCCTTTTCAGGTTCTAGTACCATAAAAAGCATGTTGCTGAACTATG
GATTGAAGAAAAAAATGAAAATCTGCATGGACAATACCGACCTACATCAT
ATGAACTTTCCGTACCAGATTGACGAATCAAAACTGGTCAAGAAACCGAA
TGAGAAATGTCAATTGGTAGCTGATGAACTAATCTTCCATGAAAAACAAG
GTATACTTCTTGACAATAGATCTTATCGGAGTTTTTGATTTTTCTAAAAA
AGCGATGCATTGTGGGATTCTTTCGGGGGTATTATAATAGAAATCTCTTA
ATAATTCCTCGAGGGAATTCTATTGTAATACCCCCGAAACAATCCCACAA
TGCATCGCTTATTTAGAAAAATAAAAAACTCCGGTAAAGTCTATTTTAAG
GAACAAATTTTGGAACTTAAAGTTTTGTTTTTCTCGATCCTTTTGCCCTA
CAGCCATCCAAGGATACTTCTTTTTGTTCCGGCTTGATGCTATGAGCATT
TCGGCTCAGACAGAACCCCCTGGGGGTACTAGGTTTGCGAGGTGACGGGT
ATGTCCGAGCCAAAAATCAAACATTGACCCTTAAAGAGGAAATATTGGCG
TTTATGGGACCCTTAGAGAGACTTTTCTCAAAATTGTTGTCGATTTTCAC
TTGTTTTTATTCAAATTTCTGAAAAACGCGACACTTTGAGAGAGGAAATT
TCAATCTTCGTGAATTTGGGACCCTTACAGAGACCCAATTTTCTTTTTAA
TGGTTTTTGTACCCCTTTGAGAGACTTTGAAAAAGGGACCCTTATGGCTC
GCACATGGGGCACCCATTTTGACTAAGTACCCTCCTTCCCCCCTCGGGCA
AAAACCCACGTCTGGGAAAAAGCTTGTAATATTCAACATTTTTGCTTGTG
TAGGTAGTCCATGGTAGGTATAAATTACAAGTACTAACTTTTTCCATGAT
CTAAACATATCTTTGGTGGAAATAGATGATTTCAATGATAAAAAATACCT
CTCGTTGATATTCTATGTACCTTAAAAAAATGAATAAATATCAGGGGTGG
TCAAAGCAAATTTTTCAGACAACAAAGAGCTAGAATGCTAATCAACCCCA
GCCTTGACCCGAAAATAGGGGTTGCTCAAAAAAAAAAGTGTTTAAAAGAT
AAAATCATTCAAAATTTACGTATAAAAAGTTGTCTTTTAAAATTTCATTC
TGATTGTTTATGTGGACGTTGGTATGAAATGATGAGCGTTCCTGCCAATC
TTTCTCGTCTCAAGAAAGTGATTTTAATCAACATACGACTTCAATGTTCT
TGTTTGAGATAACTTTTGTGATGACGATTCTTGTTGTAAAAAGATTAGCA
AAGGGTTTCTTGAAAATCCAGCTGTATAATTTGATGAGGCGAACAATAGG
GGATATAAATGCTTGTAAAATCTTTGGCCAGTTATAATAAAGTTGAATTT
CATCTGCGCTTTTCCCTTCTATCTTCATGATAGTCTTGGTAACCTTTGTT
GCATTTTTGCAATATTCTGGTAACTCGTGTAACATTGTTTTCACATGTTC
TTTGTATAACTTCTCTGTTTCTTTATCATCAAACTGTATATCAAAGTCCA
CCCTCACCATCCACGCAGTTTGGAATTTTCCGATCTTTGAAGTGTCTGTT
AAAGCTATCCAGTAGTCATATTCAAATGCTTTTTCTTCCCTCCAAATGAC
TTGTTTTGATGACCAAAAGTAAAATTTAGGCTCGATGACTTCACAATATG
TGATGATCTCCGGTCTAGTCGATATTTGACGGTTGACTGAGTTAATCCAA
TCTTCTTCCCTTGGGACATCATTTTCGTCGTCATTTTCTTCCCTTGGGAC
ATCATTTTCGTCGTCATTTTCTTCCCTTGGGACATCATTTTCGGCGTCAT
TTTCTTCCCTTGGGACATCATTTTCGTCGTCATTTTCTTCCCTTGGGACA
TCATTTTCGTCGTCATTTTCTTCCCTTGGGACATCATTTTCGGCGTCATT
TTCTTCCCTTGGGACATCATTTTCGTCGTCATTTTCTTCCCTTGGGACAT
CATTTTCGTCGTCATTTTCTTCCCTTGGGACATCATTTTCGTCGTCATTT
TCTTCCCTTGGGACATCATTTTCGGCGTCATTTTCTTCCCTTGGGACATC
ATTTTCGTCGTCATTTTCTTCCCTTGGGACATCATTTTCGTCGTCATTTT
CTTCCCTTGGGACATCATTTTCGTCAGAGGATGTGAAGATTTTCATTATG
TTGAAGATCAAACAGTGAACGAATGACAAGACAGCCCATGTTGTAAACCA
ATTTGTTGCAACAACAGATGTTTGTAACAATGCAACAAGAAAGCTCACTG
CGAATTCTAAAACGGATAATAAATTAGGATAATTCGCCATAAGGCTATTT
GTTTATGGAAAGTCTGTCTAATTTATTTAAAAAGACTCTCAATAAGACCC
GAGCTTCAAAGTTAGAAATTCTGAAATTTCGAAGAGCTCTGTTTTTCTAA
ATCGAATGGTAAACTCAGGTTTTTGGTCAAATCTTCAGATGGAAGAAATT
TTGGTGGGAGTTTAATTTGTCAATAGGTCTGAAAAGTTTTTTCAAAGGGA
ATTTAATGTCTGCCACATTGCTGGAAAATAAATTTGGTTGGAATTTAATT
TGGAGGATGAAGGATATTTTCGGCCAAGAAAACGCTATCAAACAAGTGTT
AAATAAGCAGAAAACTTGTTTCAAAGGCCTGAAATAGTACAAATTTGGAG
GAAAAATACAATAATTTAAATTTGGTCGGAACTTATATTGGTGGATTTCG
GCTGAATCCGCCAAATCCGCCAAAATTTCTTGCTTTAAAGTAATAAGATG
CGATATGAATGAGTTGGCAAAGGAATAAGTATGTGCATACATACATGTGT
GTACATTTCAAAGCCCCGAAGGGGCTAGAGATGAATCTTCAACCTTTCTC
AAGCAAAAAAAGTGAAGCCTTAGGATTTTAGAATGATGGATCTAGCGCTT
TTCTTTGTTTTCACGCGGCATATTTTTCGAAATCTGGCGATATGTTTTAC
TTTCAATCCAGCGTTTGTGTGAAAACCACGCGGGTCACGTGTTTAGGATG
GGAAATAAGTGGCTTCGTTTCCCATCCAGGAGTCTCAAGTCTAGCCCTTC
GGGCTCGGAGGTCAATGTACTATACATCCTGAATGGATACGTCACACTTA
TCAAAGTTATAGAGGGGAAAACTGATATCAATGATTTTATTCATCAAACT
TACCAGCGTATAAAAATCTCCAATGATATATTTTCTTTTCCAATACTCTG
TGAAAAAAGTAAACAAGTGTGACATCACACAGATGGAAAGCCACATAAGC
AGCGAGAACTACACCAGTTTGTATCGGATATCTGATGAATGCAGTTATAA
CGCCAAAAAAACCAACGCAATACATCAACACTGTGACCAATATAAGGACC
CAGCAATAAAGATTTATTGTGTACATTTTTTCTGAAAAAATTAGTATCGC
TATTAAAAAACAGTTTATTCTCCCAATAAAACAAGTGACAGAGTAATAAA
AAAGTATAACATTATATAAAACTGGTTTTCTGTCTATCATTCTTTTACTG
AAATTAAATTTTTAATAAGCTTTCTTTTTTAAACTTTAAAGCTTTTTTAC
ATTTTTATCTTACCAATCATGAATAGTTACTCTTCCTACTTTCGAAACCT
TCTTGGGGACCATTCAAAAAGTACGTATGCTCGAAAACGGCAAATTTTTG
ACTCCCCCTCCCCCTTGTACGCTTTCGTACGCTTTATGTGTACCCCCCCC
CCTTCAGCGTGCATACGCTTTTTAGTACCCCCCCCCCTAACCAAAGTCGA
AACTTGAAACTCTTGTAAAAGTAGAATATGTAGGTATCCAATCGTATTTA
TAACAAAGTCTCAAGAAATTAAAAGAATCTATAAGATGAACAAAAATACC
AAAGGAGAAATGAAAAATAACAATCGCAAAAACCATTTTTTGATGTGAAA
ATATTTCATTTATCTCTCAAAAAAGACAGTTTAGGAAAAATCACGAGCGT
ACGTGCTTCTCCTCAAGGACCCCCTCCCCCTCGTACGCTTTCGTACGCTT
TTGGGAGTACCCCCCTCCCCCCTCTCGAGCGTGCGTGCGTACTTTTTGAA
TGGTCCCTTGGTTAAAACTCTGAGTAAAGTTTGTAGCAGAGACAAAACAG
ACTGTAACTTTTAATAAAATTCGAATTTATTAGCGGCCCCGGTGGGGGGG
GCGCTAGCCTTGACGGCCGACGGGGACGTGCCGCTTGAGTTAGAAAAATG
GACCCTATCAGATGTCTGTGCCCCATGAAACTCTGAGTTTGAAACAAAGA
TATTGTGTCAACTATTTATTATAATAACGCTCTATTTACTTATTGAGCAC
TCTACGAGGAGAAGATATACACCCTCTACAACGACCCTATCAGATATGAA
TGTTTGGTAAATTTTCACACTGAAAAGTGGTCAAAATGCCTAACAGTAGA
CGAAATTTGAAGTCTGCAAATTTTTTTAATTTCCTACATAGCCCATGTCT
ATTATACTTGACATTGGCACTTAAAGGGTTAAGCATATAGCTGTTTCTTT
TCTTTTCTTTTTCAGCACCGAACATGATGTTTGGTCGTCCGTTGATCATC
ACCTCCCTACGTGATCCCATCATGCATTTCGTGTCCATGTACAAATTCAC
ACTGGTCCATTACGCAGTTGAGATGCTTACGTTATTAAAACTTGATTTCT
GGGATGGTGTTCGCGTGTTTTTGAAGAACCCTGATTTAGTTCGTGCAGTT
TATAACACGTTTGATCGCGATGAGATCCACGATTTCACTTTACAGCAGCT
TGTTCGCCCCAACCTCCAAGCGTTCAGTCTCGGGTTAAATGCTGACTCAA
CAGAAAAAGAAATTCAATCCAAGATTACTAGTATTGATCTGGTTATATTG
AGTGAACGGTTTTACGAATCGATTCTTTTGTTAGCTAAACGTTTATGTGT
TCCTTTTGAAGATTTGGTGTTCGTTCGGCAAAATATTAATCATCAAGACT
CGACGAGCCGATGGAAAGAAGTTCCCCCAGATGTGGAAAAATTGATTCGG
AAATTTAATGTCGTTGATATTATGCTGTATGAAAAAGCGAAAGAGAAATT
TGAGAATTCTATTCATGCTTATCCCAGAGACGCGTTAAATCATGATGTTG
AGATGTATAAAAACTCTATCAAGAGGTATGCACATAAGTGTGAAAGCATT
AAAAAACCTCTCGCCCTGATAGATGGGAATTATTGTTTACCTGAGGAAGC
ATCTTATTTTTATAAGCTCGTTCGCGCGAAATTACGGAAAGAGTTGCTTC
GCGATTTACAAGAAGAATATAATAAAGAAAATC Coding sequence (CDS) from alignment at sc0000264:353175..359157- >TCONS_00017316 ID=TCONS_00017316|Name=TCONS_00017316|organism=Clytia hemisphaerica|type=CDS|length=3492bp|location=Sequence derived from alignment at sc0000264:353175..359157- (Clytia hemisphaerica)
CACCGAACATGATGTTTGGTCGTCCGTTGATCATCACCTCCCTACGTGAT
CCCATCATGCATTTCGTGTCCATGTACAAATTCACACTGGTCCATTACGC
AGTTGAGATGCTTACGTTATTAAAACTTGATTTCTGGGATGGTGTTCGCG
TGTTTTTGAAGAACCCTGATTTAGTTCGTGCAGTTTATAACACGTTTGAT
CGCGATGAGATCCACGATTTCACTTTACAGCAGCTTGTTCGCCCCAACCT
CCAAGCGTTCAGTCTCGGGTTAAATGCTGACTCAACAGAAAAAGAAATTC
AATCCAAGATTACTAGTATTGATCTGGTTATATTGAGTGAACGGTTTTAC
GAATCGATTCTTTTGTTAGCTAAACGTTTATGTGTTCCTTTTGAAGATTT
GGTGTTCGTTCGGCAAAATATTAATCATCAAGACTCGACGAGCCGATGGA
AAGAAGTTCCCCCAGATGTGGAAAAATTGATTCGGAAATTTAATGTCGTT
GATATTATGCTGTATGAAAAAGCGAAAGAGAAATTTGAGAATTCTATTCA
TGCTTATCCCAGAGACGCGTTAAATCATGATGTTGAGATGTATAAAAACT
CTATCAAGAGGTATGCACATAAGTGTGAAAGCATTAAAAAACCTCTCGCC
CTGATAGATGGGAATTATTGTTTACCTGAGGAAGCATCTTATTTTTATAA
GCTCGTTCGCGCGAAATTACGGAAAGAGTTGCTTCGCGATTTACAAGAAG
AATATAATAAAGAAAATGTTCTAGTACCATAAAAAGCATGTTGCTGAACT
ATGGATTGAAGAAAAAAATGAAAATCTGCATGGACAATACCGACCTACAT
CATATGAACTTTCCGTACCAGATTGACGAATCAAAACTGGTCAAGAAACC
GAATGAGAAATGTCAATTGGTAGCTGATGAACTAATCTTCCATGAAAAAC
AAGATGGGCAAAGCATTTTGGCAAAACAAACATAAATTATTTTTCATGGC
CACACTAATGTTGGCAGTTGGTTATGTGCTTCTCTCAAAGTCATCCAAAC
AAGCTAGTAGCAACAAACTCTTAACGAAGGATGAGACACCATCCTTTGTT
AAGATGTCGTCATGCAAACAGAACAACAATGTTTCGATTTTTTATATCAA
AATACAAAAAACAGCACCGAACATGATGTTTGGTCGTCCGTTGATCATCA
CCTCCCTACGTGATCCCATCATGCATTTCGTGTCCATGTACAAATTCACA
CTGGTCCATTACGCAGTTGAGATGCTTACGTTATTAAAACTTGATTTCTG
GGATGGTGTTCGCGTGTTTTTGAAGAACCCTGATTTAGTTCGTGCAGTTT
ATAACACGTTTGATCGCGATGAGATCCACGATTTCACTTTACAGCAGCTT
GTTCGCCCCAACCTCCAAGCGTTCAGTCTCGGGTTAAATGCTGACTCAAC
AGAAAAAGAAATTCAATCCAAGATTACTAGTATTGATCTGGTTATATTGA
GTGAACGGTTTTACGAATCGATTCTTTTGTTAGCTAAACGTTTATGTGTT
CCTTTTGAAGATTTGGTGTTCGTTCGGCAAAATATTAATCATCAAGACTC
GACGAGCCGATGGAAAGAAGTTCCCCCAGATGTGGAAAAATTGATTCGGA
AATTTAATGTCGTTGATATTATGCTGTATGAAAAAGCGAAAGAGAAATTT
GAGAATTCTATTCATGCTTATCCCAGAGACGCGTTAAATCATGATGTTGA
GATGTATAAAAACTCTATCAAGAGGTATGCACATAAGTGTGAAAGCATTA
AAAAACCTCTCGCCCTGATAGATGGGAATTATTGTTTACCTGAGGAAGCA
TCTTATTTTTATAAGCTCGTTCGCGCGAAATTACGGAAAGAGTTGCTTCG
CGATTTACAAGAAGAATATAATAAAGAAAATGTTCTAGTACCATAAAAAG
CATGTTGCTGAACTATGGATTGAAGAAAAAAATGAAAATCTGCATGGACA
ATACCGACCTACATCATATGAACTTTCCGTACCAGATTGACGAATCAAAA
CTGGTCAAGAAACCGAATGAGAAATGTCAATTGGTAGCTGATGAACTAAT
CTTCCATGAAAAACAAGATGGGCAAAGCATTTTGGCAAAACAAACATAAA
TTATTTTTCATGGCCACACTAATGTTGGCAGTTGGTTATGTGCTTCTCTC
AAAGTCATCCAAACAAGCTAGTAGCAACAAACTCTTAACGAAGGATGAGA
CACCATCCTTTGTTAAGATGTCGTCATGCAAACAGAACAACAATGTTTCG
ATTTTTTATATCAAAATACAAAAAACAGCACCGAACATGATGTTTGGTCG
TCCGTTGATCATCACCTCCCTACGTGATCCCATCATGCATTTCGTGTCCA
TGTACAAATTCACACTGGTCCATTACGCAGTTGAGATGCTTACGTTATTA
AAACTTGATTTCTGGGATGGTGTTCGCGTGTTTTTGAAGAACCCTGATTT
AGTTCGTGCAGTTTATAACACGTTTGATCGCGATGAGATCCACGATTTCA
CTTTACAGCAGCTTGTTCGCCCCAACCTCCAAGCGTTCAGTCTCGGGTTA
AATGCTGACTCAACAGAAAAAGAAATTCAATCCAAGATTACTAGTATTGA
TCTGGTTATATTGAGTGAACGGTTTTACGAATCGATTCTTTTGTTAGCTA
AACGTTTATGTGTTCCTTTTGAAGATTTGGTGTTCGTTCGGCAAAATATT
AATCATCAAGACTCGACGAGCCGATGGAAAGAAGTTCCCCCAGATGTGGA
AAAATTGATTCGGAAATTTAATGTCGTTGATATTATGCTGTATGAAAAAG
CGAAAGAGAAATTTGAGAATTCTATTCATGCTTATCCCAGAGACGCGTTA
AATCATGATGTTGAGATGTATAAAAACTCTATCAAGAGGTATGCACATAA
GTGTGAAAGCATTAAAAAACCTCTCGCCCTGATAGATGGGAATTATTGTT
TACCTGAGGAAGCATCTTATTTTTATAAGCTCGTTCGCGCGAAATTACGG
AAAGAGTTGCTTCGCGATTTACAAGAAGAATATAATAAAGAAAATGTTCT
AGTACCATAAAAAGCATGTTGCTGAACTATGGATTGAAGAAAAAAATGAA
AATCTGCATGGACAATACCGACCTACATCATATGAACTTTCCGTACCAGA
TTGACGAATCAAAACTGGTCAAGAAACCGAATGAGAAATGTCAATTGGTA
GCTGATGAACTAATCTTCCATGAAAAACAAGATGGGCAAAGCATTTTGGC
AAAACAAACATAAATTATTTTTCATGGCCACACTAATGTTGGCAGTTGGT
TATGTGCTTCTCTCAAAGTCATCCAAACAAGCTAGTAGCAACAAACTCTT
AACGAAGGATGAGACACCATCCTTTGTTAAGATGTCGTCATGCAAACAGA
ACAACAATGTTTCGATTTTTTATATCAAAATACAAAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017316-exon-sc0000264-1575043694:358912..359157 | TCONS_00017316-exon-sc0000264-1575043694:358912..359157 | Clytia hemisphaerica | exon |
| TCONS_00017316-exon-sc0000264-1575043694:358358..358543 | TCONS_00017316-exon-sc0000264-1575043694:358358..358543 | Clytia hemisphaerica | exon |
| TCONS_00017316-exon-sc0000264-1575043694:353175..353942 | TCONS_00017316-exon-sc0000264-1575043694:353175..353942 | Clytia hemisphaerica | exon |
| TCONS_00017316-exon-sc0000264-1510915933:358912..359157 | TCONS_00017316-exon-sc0000264-1510915933:358912..359157 | Clytia hemisphaerica | exon |
| TCONS_00017316-exon-sc0000264-1510915933:358358..358543 | TCONS_00017316-exon-sc0000264-1510915933:358358..358543 | Clytia hemisphaerica | exon |
| TCONS_00017316-exon-sc0000264-1510915933:353175..353942 | TCONS_00017316-exon-sc0000264-1510915933:353175..353942 | Clytia hemisphaerica | exon |
| TCONS_00017316-exon-sc0000264-1491911889:358912..359157 | TCONS_00017316-exon-sc0000264-1491911889:358912..359157 | Clytia hemisphaerica | exon |
| TCONS_00017316-exon-sc0000264-1491911889:358358..358543 | TCONS_00017316-exon-sc0000264-1491911889:358358..358543 | Clytia hemisphaerica | exon |
| TCONS_00017316-exon-sc0000264-1491911889:353175..353942 | TCONS_00017316-exon-sc0000264-1491911889:353175..353942 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000264 | supercontig | sc0000264:353175..359157 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009729 | Gal-3-0_sulfotransfrase |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009247 | glycolipid biosynthetic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005794 | Golgi apparatus |
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0001733 | galactosylceramide sulfotransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009247 |
glycolipid biosynthetic process |
| cellular_component |
GO:0005794 |
Golgi apparatus |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0001733 |
galactosylceramide sulfotransferase activity |
Blast
BLAST of TCONS_00017316 vs. Swiss-Prot (Human)
Match: G3ST1 (Galactosylceramide sulfotransferase OS=Homo sapiens GN=GAL3ST1 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.224e-16 Identity = 84/365 (23.01%), Postives = 156/365 (42.74%), Query Frame = 3
Query: 75 FMATLMLAVGYVLLSKSSKQASSNKLLTKDETPSFVKMSSCKQNNNVS--------IFYIKIQKTGSSTIKSMLLNYGLKKKMKICMDNTDLHHMNFPYQIDESKLVK--KPNEKCQLVADELIFHEKQAPNMMFGRPLIITSLRDPIMHFVSMYKFTLVHYAVEMLTL-LKLDFWDGVRVFLKNPDLVRAVYNTFDRDEIHDFTLQQLVRPNLQAFSLGLN--ADSTEKEIQSKITSID----LVILSERFYESILLLAKRLCVPFEDLVFVRQNINHQDSTSRWKEVPPDVEKLIRKFNVVDIMLYEKAKEKFENSIHAYPRDALNHDVEMYKNSIKRYAHKCESIKKPLALIDGNYCLPEEA 1118
F + L+L Y + + AS+ +P ++ + + N + I ++K KT SST+ ++L +G K ++K N + ++P S LV+ +P ++ + + FH + ++ + IT LRDP F S + HY ++ L KL D + FL++PD +D + + L+ NL F LG + D + ++Q I ++ LV+L E F ES++LL LC ED+++ + N R + ++ +N++D LY F + A+ R+ + +V +++ +R C IDG + + A
Sbjct: 22 FTSFLLLVYSYAVPPLHAGLASTTPEAAASCSPPALEPEAVIRANGSAGECQPRRNIVFLKTHKTASSTLLNILFRFGQKHRLKFAFPNGR-NDFDYPTFFARS-LVQDYRPGACFNIICNHMRFHYDEVRGLVPTNAIFITVLRDPARLFESSF-----HYFGPVVPLTWKLSAGDKLTEFLQDPD------RYYDPNGFNAHYLR-----NLLFFDLGYDNSLDPSSPQVQEHILEVERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNARRDSPVPR---LSGELYGRATAWNMLDSHLYRHFNASFWRKVEAFGRERMAREVAALRHANERMRTIC---------IDGGHAVDAAA 356
The following BLAST results are available for this feature:
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