TCONS_00017389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017389
Unique NameTCONS_00017389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017389 ID=TCONS_00017389|Name=TCONS_00017389|organism=Clytia hemisphaerica|type=transcript|length=367bp
TCTAGTTTGAAGCAAATATCATCGATTATCAAGTGTCTCAATGATTTCAT
TTTGGAGAGCGTGTTTACGAAATCACCGACATtctctttattcaaatata
acaggtttgttttgatgatcCAGATagGTAAGTCgacaaaatgtttgaaa
actTGGTATTTCAATTGTGAACTATAATAGCACTGAAATTCAAACCTGTT
TAAATATTTGAATTGTTTCAACACTCACTAAACTTGAGTAGCTTCTCCCA
CGTCACAATTTACTGCTTGAcatgaaagaaattttcatatcATAGCGAAC
GAAAATTTCGATATCCTTGACAGTGAACTTATATCTGTCTTTCGTTCTCG
TTACTAGTAACTCTTCG
Run BLAST on NCBI

transcript from alignment at sc0000266:372400..373343-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017389 ID=TCONS_00017389|Name=TCONS_00017389|organism=Clytia hemisphaerica|type=transcript|length=944bp|location=Sequence derived from alignment at sc0000266:372400..373343- (Clytia hemisphaerica)
TCTAGTTTGAAGCAAATATCATCGATTATCAAGTGTCTCAATGATTTCAT
TTTGGAGAGCGTGTTTACGAAATCACCGACATTCTCTTTATTCAAATATA
ACAGGTTTGTTTTGATGATCCAGATAGGCGAGGGGTAAATCACTGAAAAA
AATCACGTACACCTTTTTGAAAAATCAAAAAGAAATCAAAAATCAAAAAG
AAATCAAAAATCAAAAAGAAATCAAAAAGAAATCAAAAATCAAAAAGAAA
TCAAAAAGAAATCAAAAATCAAAAAGAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA
AAAGAAATCAGAAATCAAAAAGAAATCAAAAAGAAATCAGAAATCAAAAA
GAAATCAAAAAGAAATCAGAAATCAAAAGGAAATCAAAAAGAAATCAAAA
ATCAAAAAGAAATCAAGAAGAAATCAAAAATCAAAAAGAAATCAAAAAGA
AATCAGAAATCAAAAAGAAATAAAAAAAATAAAAAAAATAAAAAAAATAA
ATCAAAAATCAAAAAGAAATAAAAAAGAAATCAGAAATCAAAAAGAAATC
CAAAAGAAATCAGAAATCAAAAGGAAATCAAAAAGAAATCAAAAATCAAA
AAGAAATCAAAATCTCGTACACCTAATTTTTAGTGATTTACCCCTCGCAG
ATAGGTAAGTCGACAAAATGTTTGAAAACTTGGTATTTCAATTGTGAACT
ATAATAGCACTGAAATTCAAACCTGTTTAAATATTTGAATTGTTTCAACA
CTCACTAAACTTGAGTAGCTTCTCCCACGTCACAATTTACTGCTTGACAT
GAAAGAAATTTTCATATCATAGCGAACGAAAATTTCGATATCCTTGACAG
TGAACTTATATCTGTCTTTCGTTCTCGTTACTAGTAACTCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009736XLOC_009736Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017389-exon-sc0000266-1575043694:373217..373343TCONS_00017389-exon-sc0000266-1575043694:373217..373343Clytia hemisphaericaexon
TCONS_00017389-exon-sc0000266-1575043694:372400..372639TCONS_00017389-exon-sc0000266-1575043694:372400..372639Clytia hemisphaericaexon
TCONS_00017389-exon-sc0000266-1510915933:373217..373343TCONS_00017389-exon-sc0000266-1510915933:373217..373343Clytia hemisphaericaexon
TCONS_00017389-exon-sc0000266-1510915933:372400..372639TCONS_00017389-exon-sc0000266-1510915933:372400..372639Clytia hemisphaericaexon
TCONS_00017389-exon-sc0000266-1491911889:373217..373343TCONS_00017389-exon-sc0000266-1491911889:373217..373343Clytia hemisphaericaexon
TCONS_00017389-exon-sc0000266-1491911889:372400..372639TCONS_00017389-exon-sc0000266-1491911889:372400..372639Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:372400..373343 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.224543	0.218964	0	0	0.605617	1.19642	1.44343	0.540527	0.946089	0.937507	1.36495	1.19635	0.448009	1.39578	0.127503	0	0	0	0	0	0.868402	0.317682	0.257456	0	1.20541	1.72128	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top