TCONS_00017468 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017468
Unique NameTCONS_00017468
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017468 ID=TCONS_00017468|Name=TCONS_00017468|organism=Clytia hemisphaerica|type=transcript|length=570bp
TCGAAATTACTTGGAGATCCAGGCTAATCATCTTTTCtcagaaattctta
aaaataattaaattaatATACAGTTTCATTTCTAAATGTTTCTTCCTGTT
TCTCTAGaatatttctttaaattttcttcTAACGAAATATACTGCTGGTC
AGTATCTCATATTATCTAACATATATTTATTGTAAAAAAGATTATATATT
GTGTATCTAGATAAAAAGTTATATTCTTAGCTACAACCCCAGGGATGCAC
TGAGGAAAAATGGGGGCCGGGCTGTTCGAGCCACAAAGgatccctttttc
acacccttgAAAATCTCTCAAAGGGCTATAACGAccataaaaaaaatcac
ttaGTCTCTAAGGGTTTCAAAACTGGGAAAATCGAACATTGACTCCCTCA
AACTTAAAGGGTGGtagattcttgaaattttgaccaaagtctgagatttt
gggaaaataacctctctaagggtcgtaaaaacgtcaaaatagagaacatt
ttcaaaattatgtGGCTACAAAACCTCTTAATGTGATATATTGATTAAAA
TAATTCATATTCATTGTATT
Run BLAST on NCBI

transcript from alignment at sc0000267:22420..22989

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017468 ID=TCONS_00017468|Name=TCONS_00017468|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at sc0000267:22420..22989 (Clytia hemisphaerica)
AATACAATGAATATGAATTATTTTAATCAATATATCACATTAAGAGGTTT
TGTAGCCacataattttgaaaatgttctctattttgacgtttttacgacc
cttagagaggttattttcccaaaatctcagactttggtcaaaatttcaag
aatctaCCACCCTTTAAGTTTGAGGGAGTCAATGTTCGATTTTCCCAGTT
TTGAAACCCTTAGAGACtaagtgattttttttatggTCGTTATAGCCCTT
TGAGAGATTTTcaagggtgtgaaaaagggatcCTTTGTGGCTCGAACAGC
CCGGCCCCCATTTTTCCTCAGTGCATCCCTGGGGTTGTAGCTAAGAATAT
AACTTTTTATCTAGATACACAATATATAATCTTTTTTACAATAAATATAT
GTTAGATAATATGAGATACTGACCAGCAGTATATTTCGTTAgaagaaaat
ttaaagaaatattCTAGAGAAACAGGAAGAAACATTTAGAAATGAAACTG
TATattaatttaattatttttaagaatttctgaGAAAAGATGATTAGCCT
GGATCTCCAAGTAATTTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009768XLOC_009768Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017468-exon-sc0000267-1491911889:22420..22989TCONS_00017468-exon-sc0000267-1491911889:22420..22989Clytia hemisphaericaexon
TCONS_00017468-exon-sc0000267-1510915933:22420..22989TCONS_00017468-exon-sc0000267-1510915933:22420..22989Clytia hemisphaericaexon
TCONS_00017468-exon-sc0000267-1575043694:22420..22989TCONS_00017468-exon-sc0000267-1575043694:22420..22989Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:22420..22989 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.111273	0	0	0	0	0	0.0828155	0	0	0	0.865954	0.225571	0	0.0598868	0	0.378088	7.34859	11.1679	1.52572	0.877759	1.46619	3.30456	4.09159	4.48133	0	0	0.340149	0.333403
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017468 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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