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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017472 ID=TCONS_00017472|Name=TCONS_00017472|organism=Clytia hemisphaerica|type=transcript|length=1374bp
CTGTACAATAGTAGAAAATGAAGTAAATAGGAAAAACAAGAATTTTGGTT
TGAGTTGGAGGTCACAAAGAGTAAAGACGGCGGTCTCAAAGAAGCCTACA
GATTTCAAGAGAGCAAGATTTTATGCACGCTTTTTCATTGATAAAGAAGA
TTATGAGACTTGAAACCGTATTGATCTGACGCACGCAacaaaaatgaatt
tcgaagaaTTGACGTGTTTACAAAAGGTGACTGGTATTTCAGAGTATAAC
CAATCAACGACTGCCATCTTCTTGCTACAGATACAAGAGGCTGGACGTGG
GTACAATGAAGCCGTCTCTAACGTCCCAATGCTTGTCATCTGCTCAATCA
TTTTGACTGTGGGGTTTTTAACGAACgcttttattttggttttgatACCC
TCCAAAAAGAAATTATCAAGTCCCATGAACCTTTTACTAGTAAACATGTC
ACTGGGACACATTATATCATGCATTACTTTATTCATATTTTGTTTCGTCC
CTGACACTGGAATATTTGGCAGAAATGCGTTCACGTTGAACATTATGTGT
GGGTTTTTCACGGATGGTGGCGGAGTTTATTTCATAAGCGCCGGATCTTA
TTTACTGACATTATGCGCTATCAGTTTCAATCGCTATGCGGCCATACGTT
TTCCGCATAGGCAGCACTTAAGAATGGGTAAGCGGTCGGTATTTGGTTAT
AATTTGATCGTATGGTTTCTATCGATGGCTTGGGTTCTACCGTCAACTAT
TTCGTTCCGGTATGACGCGCTGACGGGACTCTGCTTACGTGATTGGAAAT
TCGGACACGTTTTCGCGTACCGGATTGCTGCTCTATTATGGTCTATCCTT
CTACCTCtcttgttcttaattttgtcTTTCTCCGTCATCTTATGGAAACG
TAAGGAGAATAGTATCTTGAACGGGAACGTTAGCCGTCGGTTACGTTTAC
AAAAAGCTGAGAAACTACTCGGTTTGTTAATCATTACGTTCTTATTCACG
TGGACACCGTTTTTCATTTACTGGGCTTTGTATACAGTGACGGACATTTT
TGATGATTGCGTTGGGGAGTACCGCGCTATGACTTGGATGCGTATCGCTA
TTATCTTCTCCTCTATAAACACTGTTATTGATCCGTATCTATACACTATC
GGAAGTCGAGATATCCGACGCACAATAGTCGGGATGCTCCGGCGATTCCA
GAATCGTAACCGGATCGGAACGAGCACAACGCCATGTACAAATAATATGA
CCACAAATAATATGACCACCAAGGAGAATCATGGACAAGGATATACAAAG
CCTGGTAACaggctatcttgtaaattgtcTAGCCCGTAGAATGAAGGTTT
TCTGTGCAATGGTTGTTTCTGGAA Run BLAST on NCBI protein sequence of TCONS_00017472-protein >TCONS_00017472-protein ID=TCONS_00017472-protein|Name=TCONS_00017472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
MNFEELTCLQKVTGISEYNQSTTAIFLLQIQEAGRGYNEAVSNVPMLVIC
SIILTVGFLTNAFILVLIPSKKKLSSPMNLLLVNMSLGHIISCITLFIFC
FVPDTGIFGRNAFTLNIMCGFFTDGGGVYFISAGSYLLTLCAISFNRYAA
IRFPHRQHLRMGKRSVFGYNLIVWFLSMAWVLPSTISFRYDALTGLCLRD
WKFGHVFAYRIAALLWSILLPLLFLILSFSVILWKRKENSILNGNVSRRL
RLQKAEKLLGLLIITFLFTWTPFFIYWALYTVTDIFDDCVGEYRAMTWMR
IAIIFSSINTVIDPYLYTIGSRDIRRTIVGMLRRFQNRNRIGTSTTPCTN
NMTTNNMTTKENHGQGYTKPGNRLSCKLSSP Run BLAST on NCBI transcript from alignment at sc0000267:190558..191931 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017472 ID=TCONS_00017472|Name=TCONS_00017472|organism=Clytia hemisphaerica|type=transcript|length=1374bp|location=Sequence derived from alignment at sc0000267:190558..191931 (Clytia hemisphaerica)
TTCCAGAAACAACCATTGCACAGAAAACCTTCATTCTACGGGCTAgacaa
tttacaagatagcctGTTACCAGGCTTTGTATATCCTTGTCCATGATTCT
CCTTGGTGGTCATATTATTTGTGGTCATATTATTTGTACATGGCGTTGTG
CTCGTTCCGATCCGGTTACGATTCTGGAATCGCCGGAGCATCCCGACTAT
TGTGCGTCGGATATCTCGACTTCCGATAGTGTATAGATACGGATCAATAA
CAGTGTTTATAGAGGAGAAGATAATAGCGATACGCATCCAAGTCATAGCG
CGGTACTCCCCAACGCAATCATCAAAAATGTCCGTCACTGTATACAAAGC
CCAGTAAATGAAAAACGGTGTCCACGTGAATAAGAACGTAATGATTAACA
AACCGAGTAGTTTCTCAGCTTTTTGTAAACGTAACCGACGGCTAACGTTC
CCGTTCAAGATACTATTCTCCTTACGTTTCCATAAGATGACGGAGAAAga
caaaattaagaacaagaGAGGTAGAAGGATAGACCATAATAGAGCAGCAA
TCCGGTACGCGAAAACGTGTCCGAATTTCCAATCACGTAAGCAGAGTCCC
GTCAGCGCGTCATACCGGAACGAAATAGTTGACGGTAGAACCCAAGCCAT
CGATAGAAACCATACGATCAAATTATAACCAAATACCGACCGCTTACCCA
TTCTTAAGTGCTGCCTATGCGGAAAACGTATGGCCGCATAGCGATTGAAA
CTGATAGCGCATAATGTCAGTAAATAAGATCCGGCGCTTATGAAATAAAC
TCCGCCACCATCCGTGAAAAACCCACACATAATGTTCAACGTGAACGCAT
TTCTGCCAAATATTCCAGTGTCAGGGACGAAACAAAATATGAATAAAGTA
ATGCATGATATAATGTGTCCCAGTGACATGTTTACTAGTAAAAGGTTCAT
GGGACTTGATAATTTCTTTTTGGAGGGTatcaaaaccaaaataaaagcGT
TCGTTAAAAACCCCACAGTCAAAATGATTGAGCAGATGACAAGCATTGGG
ACGTTAGAGACGGCTTCATTGTACCCACGTCCAGCCTCTTGTATCTGTAG
CAAGAAGATGGCAGTCGTTGATTGGTTATACTCTGAAATACCAGTCACCT
TTTGTAAACACGTCAAttcttcgaaattcatttttgtTGCGTGCGTCAGA
TCAATACGGTTTCAAGTCTCATAATCTTCTTTATCAATGAAAAAGCGTGC
ATAAAATCTTGCTCTCTTGAAATCTGTAGGCTTCTTTGAGACCGCCGTCT
TTACTCTTTGTGACCTCCAACTCAAACCAAAATTCTTGTTTTTCCTATTT
ACTTCATTTTCTACTATTGTACAG Coding sequence (CDS) from alignment at sc0000267:190558..191931 >TCONS_00017472 ID=TCONS_00017472|Name=TCONS_00017472|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at sc0000267:190558..191931 (Clytia hemisphaerica)
CTACGGGCTAgacaatttacaagatagcctGTTACCAGGCTTTGTATATC
CTTGTCCATGATTCTCCTTGGTGGTCATATTATTTGTGGTCATATTATTT
GTACATGGCGTTGTGCTCGTTCCGATCCGGTTACGATTCTGGAATCGCCG
GAGCATCCCGACTATTGTGCGTCGGATATCTCGACTTCCGATAGTGTATA
GATACGGATCAATAACAGTGTTTATAGAGGAGAAGATAATAGCGATACGC
ATCCAAGTCATAGCGCGGTACTCCCCAACGCAATCATCAAAAATGTCCGT
CACTGTATACAAAGCCCAGTAAATGAAAAACGGTGTCCACGTGAATAAGA
ACGTAATGATTAACAAACCGAGTAGTTTCTCAGCTTTTTGTAAACGTAAC
CGACGGCTAACGTTCCCGTTCAAGATACTATTCTCCTTACGTTTCCATAA
GATGACGGAGAAAgacaaaattaagaacaagaGAGGTAGAAGGATAGACC
ATAATAGAGCAGCAATCCGGTACGCGAAAACGTGTCCGAATTTCCAATCA
CGTAAGCAGAGTCCCGTCAGCGCGTCATACCGGAACGAAATAGTTGACGG
TAGAACCCAAGCCATCGATAGAAACCATACGATCAAATTATAACCAAATA
CCGACCGCTTACCCATTCTTAAGTGCTGCCTATGCGGAAAACGTATGGCC
GCATAGCGATTGAAACTGATAGCGCATAATGTCAGTAAATAAGATCCGGC
GCTTATGAAATAAACTCCGCCACCATCCGTGAAAAACCCACACATAATGT
TCAACGTGAACGCATTTCTGCCAAATATTCCAGTGTCAGGGACGAAACAA
AATATGAATAAAGTAATGCATGATATAATGTGTCCCAGTGACATGTTTAC
TAGTAAAAGGTTCATGGGACTTGATAATTTCTTTTTGGAGGGTatcaaaa
ccaaaataaaagcGTTCGTTAAAAACCCCACAGTCAAAATGATTGAGCAG
ATGACAAGCATTGGGACGTTAGAGACGGCTTCATTGTACCCACGTCCAGC
CTCTTGTATCTGTAGCAAGAAGATGGCAGTCGTTGATTGGTTATACTCTG
AAATACCAGTCACCTTTTGTAAACACGTCAAttcttcgaaattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017472-exon-sc0000267-1491911889:190558..191931 | TCONS_00017472-exon-sc0000267-1491911889:190558..191931 | Clytia hemisphaerica | exon |
| TCONS_00017472-exon-sc0000267-1510915933:190558..191931 | TCONS_00017472-exon-sc0000267-1510915933:190558..191931 | Clytia hemisphaerica | exon |
| TCONS_00017472-exon-sc0000267-1575043694:190558..191931 | TCONS_00017472-exon-sc0000267-1575043694:190558..191931 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000267 | supercontig | sc0000267:190558..191931 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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