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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017484 ID=TCONS_00017484|Name=TCONS_00017484|organism=Clytia hemisphaerica|type=transcript|length=1377bp
gaaatgttcttaaaaatgtATTTACATACTTTATTAATGAAAATGGGAAT
TAAAATCAGCAAATTTTAGCCATTTCTGAGACCTGAGACCTTGGATAGTT
CCTAAATTTGTTCTTAGGGTTTTGACAAAATCATTTCCTGATAAAACCGT
TGttataaaaaattgtattaTAACATGTTGTCCTTCATAGCAAGAATATT
CGTAAGAGAAAATCATAAACATTCAACGATTCAAAGCAATCTAACAGAAG
CACAAGTGTTCCAAACTTGAGGTGTTTGCTCACAATCCCATCTGAATGAT
AAAACATATTCTCCTTCGTCTAAATCTTTGGGAATCTCCACCAAATCAAT
GATAGAGAAggggaaatgttttttgaattcttttccataaagaccATATC
CTTCCAGATTATGTCCAGGTGCTGGAAACTGCGTGTCCCTTTTTTACACG
GTGGGTTTGGGTACGTCCTTCCTCCGTGTATCCCATCGCATGCTGGGATT
GGATTCTTggtccattgggaaccaggcGGAAAGGTACCCTTATCAGTTCG
TACAGCAGGGAATTCGTATCTCGTTGATCTGCCTTCGCCGAATTGAACCC
AATGTTTATCGCCAACAAAACGAAGTGGTGTTTGTTGAAAACATTCCTCA
GTTAAAGATCTGCGCCCTTCGTTCGGCATTTTACACAACCTGTATGAATA
TCCACCACCATGGTTGGCTCGAATTCCCCAAGCGACTTCCACGTGGTCAC
CAAGTGTCCAATTAGTCACGTGGATGTCATGTTTGAATTGAAATTCTTCT
GCTTTTGGTCCAAATGGATAACCACCTTGATCATTACCGCATTGAGGACC
TCCTAAGCAACCGTTAGGGTTCCCACCGGCGGCTCCACAGGGTGAAAACA
CAGGGGCGGAACCAGGCGCACGCCACGGATGATGCAAAAGCGTTTTTTCA
AAACCTGTATGTGGATAAGTACGTAGATCATGACGAAATAGTGTTGGTTT
TTTAACGAAGGTATAATTGGCGAACCACATACATGCGTCCGCCTTACTGG
TGTTTCCTACTCCCTCGCAATATTTCGGCTCACGGCAGACTTCACTATTC
GGAATATCAGCTCCAGGAAGGCACATTTTTTGCGACTTTAAACCAACGAA
ACCGTATTCGTAGCCATGCTCCATTTTAATCCATTGTGGATGGTCGAACC
AATTGTAAGGAATCATCATTGCTCCATGACCAGAAACGATCAATGGCAAA
CTTATGGCAATGGCACAAATGCCAAAGAACAAATAACCTGTTTTCATCTC
TGATATTTTTCTCACTTACTGTTAAaacgtactttttgaaatatCACATC
ACTCTAAGAGCTACTGTAACTATCCTT Run BLAST on NCBI protein sequence of TCONS_00017484-protein >TCONS_00017484-protein ID=TCONS_00017484-protein|Name=TCONS_00017484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MKTGYLFFGICAIAISLPLIVSGHGAMMIPYNWFDHPQWIKMEHGYEYGF
VGLKSQKMCLPGADIPNSEVCREPKYCEGVGNTSKADACMWFANYTFVKK
PTLFRHDLRTYPHTGFEKTLLHHPWRAPGSAPVFSPCGAAGGNPNGCLGG
PQCGNDQGGYPFGPKAEEFQFKHDIHVTNWTLGDHVEVAWGIRANHGGGY
SYRLCKMPNEGRRSLTEECFQQTPLRFVGDKHWVQFGEGRSTRYEFPAVR
TDKGTFPPGSQWTKNPIPACDGIHGGRTYPNPPCKKGTRSFQHLDIIWKD
MVFMEKNSKNISPSLSLIWWRFPKI Run BLAST on NCBI transcript from alignment at sc0000267:438110..439486 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017484 ID=TCONS_00017484|Name=TCONS_00017484|organism=Clytia hemisphaerica|type=transcript|length=1377bp|location=Sequence derived from alignment at sc0000267:438110..439486 (Clytia hemisphaerica)
AAGGATAGTTACAGTAGCTCTTAGAGTGATGTGatatttcaaaaagtacg
ttTTAACAGTAAGTGAGAAAAATATCAGAGATGAAAACAGGTTATTTGTT
CTTTGGCATTTGTGCCATTGCCATAAGTTTGCCATTGATCGTTTCTGGTC
ATGGAGCAATGATGATTCCTTACAATTGGTTCGACCATCCACAATGGATT
AAAATGGAGCATGGCTACGAATACGGTTTCGTTGGTTTAAAGTCGCAAAA
AATGTGCCTTCCTGGAGCTGATATTCCGAATAGTGAAGTCTGCCGTGAGC
CGAAATATTGCGAGGGAGTAGGAAACACCAGTAAGGCGGACGCATGTATG
TGGTTCGCCAATTATACCTTCGTTAAAAAACCAACACTATTTCGTCATGA
TCTACGTACTTATCCACATACAGGTTTTGAAAAAACGCTTTTGCATCATC
CGTGGCGTGCGCCTGGTTCCGCCCCTGTGTTTTCACCCTGTGGAGCCGCC
GGTGGGAACCCTAACGGTTGCTTAGGAGGTCCTCAATGCGGTAATGATCA
AGGTGGTTATCCATTTGGACCAAAAGCAGAAGAATTTCAATTCAAACATG
ACATCCACGTGACTAATTGGACACTTGGTGACCACGTGGAAGTCGCTTGG
GGAATTCGAGCCAACCATGGTGGTGGATATTCATACAGGTTGTGTAAAAT
GCCGAACGAAGGGCGCAGATCTTTAACTGAGGAATGTTTTCAACAAACAC
CACTTCGTTTTGTTGGCGATAAACATTGGGTTCAATTCGGCGAAGGCAGA
TCAACGAGATACGAATTCCCTGCTGTACGAACTGATAAGGGTACCTTTCC
gcctggttcccaatggaccAAGAATCCAATCCCAGCATGCGATGGGATAC
ACGGAGGAAGGACGTACCCAAACCCACCGTGTAAAAAAGGGACACGCAGT
TTCCAGCACCTGGACATAATCTGGAAGGATATggtctttatggaaaagaa
ttcaaaaaacatttccccTTCTCTATCATTGATTTGGTGGAGATTCCCAA
AGATTTAGACGAAGGAGAATATGTTTTATCATTCAGATGGGATTGTGAGC
AAACACCTCAAGTTTGGAACACTTGTGCTTCTGTTAGATTGCTTTGAATC
GTTGAATGTTTATGATTTTCTCTTACGAATATTCTTGCTATGAAGGACAA
CATGTTAtaatacaattttttataaCAACGGTTTTATCAGGAAATGATTT
TGTCAAAACCCTAAGAACAAATTTAGGAACTATCCAAGGTCTCAGGTCTC
AGAAATGGCTAAAATTTGCTGATTTTAATTCCCATTTTCATTAATAAAGT
ATGTAAATacatttttaagaacatttc Coding sequence (CDS) from alignment at sc0000267:438110..439486 >TCONS_00017484 ID=TCONS_00017484|Name=TCONS_00017484|organism=Clytia hemisphaerica|type=CDS|length=978bp|location=Sequence derived from alignment at sc0000267:438110..439486 (Clytia hemisphaerica)
ATGAAAACAGGTTATTTGTTCTTTGGCATTTGTGCCATTGCCATAAGTTT
GCCATTGATCGTTTCTGGTCATGGAGCAATGATGATTCCTTACAATTGGT
TCGACCATCCACAATGGATTAAAATGGAGCATGGCTACGAATACGGTTTC
GTTGGTTTAAAGTCGCAAAAAATGTGCCTTCCTGGAGCTGATATTCCGAA
TAGTGAAGTCTGCCGTGAGCCGAAATATTGCGAGGGAGTAGGAAACACCA
GTAAGGCGGACGCATGTATGTGGTTCGCCAATTATACCTTCGTTAAAAAA
CCAACACTATTTCGTCATGATCTACGTACTTATCCACATACAGGTTTTGA
AAAAACGCTTTTGCATCATCCGTGGCGTGCGCCTGGTTCCGCCCCTGTGT
TTTCACCCTGTGGAGCCGCCGGTGGGAACCCTAACGGTTGCTTAGGAGGT
CCTCAATGCGGTAATGATCAAGGTGGTTATCCATTTGGACCAAAAGCAGA
AGAATTTCAATTCAAACATGACATCCACGTGACTAATTGGACACTTGGTG
ACCACGTGGAAGTCGCTTGGGGAATTCGAGCCAACCATGGTGGTGGATAT
TCATACAGGTTGTGTAAAATGCCGAACGAAGGGCGCAGATCTTTAACTGA
GGAATGTTTTCAACAAACACCACTTCGTTTTGTTGGCGATAAACATTGGG
TTCAATTCGGCGAAGGCAGATCAACGAGATACGAATTCCCTGCTGTACGA
ACTGATAAGGGTACCTTTCCgcctggttcccaatggaccAAGAATCCAAT
CCCAGCATGCGATGGGATACACGGAGGAAGGACGTACCCAAACCCACCGT
GTAAAAAAGGGACACGCAGTTTCCAGCACCTGGACATAATCTGGAAGGAT
ATggtctttatggaaaagaattcaaaaaacatttccccTTCTCTATCATT
GATTTGGTGGAGATTCCCAAAGATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017484-exon-sc0000267-1491911889:438110..439486 | TCONS_00017484-exon-sc0000267-1491911889:438110..439486 | Clytia hemisphaerica | exon |
| TCONS_00017484-exon-sc0000267-1510915933:438110..439486 | TCONS_00017484-exon-sc0000267-1510915933:438110..439486 | Clytia hemisphaerica | exon |
| TCONS_00017484-exon-sc0000267-1575043694:438110..439486 | TCONS_00017484-exon-sc0000267-1575043694:438110..439486 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000267 | supercontig | sc0000267:438110..439486 . |
Blast
The following BLAST results are available for this feature:
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