TCONS_00017520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017520
Unique NameTCONS_00017520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017520 ID=TCONS_00017520|Name=TCONS_00017520|organism=Clytia hemisphaerica|type=transcript|length=1403bp
ACAGTTCTTATATGTTTTGCTAACTACAGTTCTTAATGTTTTGATATCAA
CTGTCatttacgtcatcaaaacattatcacagaaaaaaaatgCTGAAACG
CTGACACTCAAAAATCCCAAGAAATCTAATTTTAACTATCTatataattt
aattttgatgGTGAGATAATACGTTTTTAGAAGACCAAATAATGACGATG
ACTTCATTTCCATTGTTCATTGCCACATGCATATAAATAGAAACGCAAGA
AGTGAACAGTATTAAGAAGCTCACCATCAGACAGAGAAGATAAACCACAA
GAAACAAACAACAAAGTTAACTCTTGGTATCATGATGAAaatcgtttttc
tttttctggtTTGTTTTGTTCTTCAACAAGCAAGCTCAAATGAGTTGAAG
GAAGGAGAATCTCACAGCCGTGAACGCAGAGCAGTGTGTGGTTATCAAAG
ATATAACACTCGATTTAGGATGTGCTGCAGTGGCAAATTGGGCCTAAAAG
GATCTAACAATGCCTGCTGCGGTCAAACAGGTTATAACACTCGATTCAGG
ATGTGCTGCGGTGGCAAATTGGGCCTAAAAGGATCTAGCAATACCTGTTG
CGGACAAACAGGTTATAACACTCGATTCAGGATATGCTGCGGTGGTAGAT
TGGGCTTAAAAGGATCTAACAATGCCTGCTGCGGTCAAACAGGCTATAAC
ACTCGATTCAGGATATGCTGCGGTGGCAAATTGGGCTTAAAAGGATCTAA
CAATGCCTGCTGCGGTCAAACAGGTTATAACACTCGATTCAGGATATGCT
GCGGTGGCAAATTGGGCTTAAAAGGATCTAACAATGCCTGCTGCGGTCAA
ACAGGTTATAACACTCGATTCAGGATATGCTGCGGTGGCAAATTGGGCTT
AAAAGGATCTAACAATGCCTGTTGCGGTCAAACAGGTTATAACACTCGAT
TCAGGATATGCTGCGGTGGTAGATTGGGCTTAAAAGGATCTAACAATGCC
TGCTGCGGACAAACAGGTTATAACACTCGATTTAGGATGTGCTGCAATGG
TCGACTATGTTAAAAGAATATCTGTATAACTACAGCACCGAGTTTTAGTT
TAAACATATGGGGATAGAGAAGGTATCTCCAGCAacctcaagcaagaaaa
agtgctTCCGGAACGACTGATTTAATTTATcgctttctttattttcacgc
ggcatatttttcaaaatctggcgattaattttactttcaatctgccGTTT
GTGCGAAAATCACGCTTTAATTCCATCAAAGAGTTTCAATAATAGCCCCT
TCAggactttaaactcaatggtattAACTCTTATCAAGgatttgtagaaa
taaaaggagcgaaatgatattgaaaatgttatttcttACTTTGTATTTCT
ATA
Run BLAST on NCBI

transcript from alignment at sc0000269:339486..350399+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017520 ID=TCONS_00017520|Name=TCONS_00017520|organism=Clytia hemisphaerica|type=transcript|length=10914bp|location=Sequence derived from alignment at sc0000269:339486..350399+ (Clytia hemisphaerica)
ACAGTTCTTATATGTTTTGCTAACTACAGTTCTTAATGTTTTGATATCAA
CTGTCatttacgtcatcaaaacattatcacagaaaaaaaatgCTGAAACG
CTGACACTCAAAAATCCCAAGAAATCTAATTTTAACTATCTatataattt
aattttgatgGTGAGATAATACGTTTTTAGAAGACCAAATAATGACGATG
ACTTCATTTCCATTGTTCATTGCCACATGCATATAAATAGAAACGCAAGA
AGTGAACAGTATTAAGAAGCTCACCATCAGACAGAGAAGATAAACCACAA
GAAACAAACAACAAAGTTAACTCTTGGTATCATGATGAAaatcgtttttc
tttttctggtTTGTTTTGTTCTTCAACAAGCAAGCTCAAATGAGTTGAAG
GAAGGAGGTAAATATGTAACATGTTCGAACCCAGTAACTCTAATGAAACA
TAAGATTTCCTTTTCAAAACTAGATTTCGCTTTTTAGCAACCAGTGGAAA
ACTGGTTACAAACAACAAATCCATCTTCCCTTGTTCTTTTATCATCTCAT
CCTTTCTATTTATGAGAAGGAATAGTAAAATTAGAACAGGAAACCTGACA
TTTAAAGATCCACATTCAAACAATATCAAAAACTTCAACAACATGCTCTG
TTTTCCTTTCAGAATCTCACAGCCGTGAACGCAGAGCAGTGTGTGGTTAT
CAAAGATATAACACTTAAAAAGAATAACAGAGATAACAGATataacaatt
aaaaagaaacaccaattactctaaatttgagtctaaggccTTGGAGAGCT
GAGGCCATTGTTTTTTCAGAGCAAcagaaaaaacataaacataaacaaaa
gtCAAGAAGAAAACGAATACCGGGTAGAGGCTGCTGATCCCGGGGCCTAG
GCCAAAGGTAGCCCAACCCACCTNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNGGGTAGAAAATGTTATCTAAAAGAGGTGAACATAAGGCAAAAAA
ACATATGGAGAGACTCCCTGTCAGAAGAAGGTCCCAGACTATTTAATGCC
CTCCCACAAATCATCCGTAACCTCAAAAACTGCTCCAAAACTagttttaa
acatcaattggaccattttctcaattcactACCGGACGAGCCACTGCTGC
CGAATTACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAAAGTCATGGTCCATCAT
CGGATTtctcaaattggatgattgttgagacgaacaaagaagccttcaaa
aagtatcaaaaagtaAGTATCACTCGATTTAGGATGTGCTGCGGTGGCAA
ATTGGGCTTAAAAGGATCTAACAATGCCTGTTGCGGTCAAACAGGTTTTA
ACACTCGATTCAGGATGTGCTGCGGTGGCAAATTGGGCTTAAAAGGATCT
AACAATGCCTGCTGCGGTCAAACAggttataacactcgcttcaggaTATG
CTGTGGTGGCAAATTGGGCTTAAAAGGATCTAACAATGCCTGCTGCGGTC
AAACAGGTTATAACACTCGATTCAGGATATGCTGCGGTGGCAGATTGGGC
TTAAAAGGATCTAACAATGCCTGCTGCGGTCAAACAGGTTATAACACTCG
ATTCAGGATATGCTGCGGTGGTAGATTGGGCTTAAAAGGATCTAACAATG
CCTGCTGCGGTCAAACAGGTTATAACACTCGATTCAGGATGTGCTGCGGT
GGCAAATTGGGCTTAAAAGGATCTAACAATGCCTGCTGCGGTCAAACAGG
TTATAACACTCGATTCAGGATGTGCTGCGGTGGCAAATTGGGCTTAAAAG
GATCTAACAATGCCTGCTGCGGTCAAACAGGTTATAACACTCGATTCAGG
ATGTGCTGCGGTGGCAAATTGGGCTTAAAAGGATCTAACAATGCCTGCTG
CGGTCAAACAGGGTATAACACTCGATTCaggatgtgctgcgatggcaaAT
TGGGCTTAAAAGGATCTAACAATGCCTGCTGCGGTCAAACAGGTTATAAC
AATCGATTCAGGATATGCTGCAGTGGTAGATTGGGCTTAAAAGGATCTAA
CAATGCCTGTTGCGGACAAACAAGTTATAACACTCGATTTAGGATGTGCT
GCAATGGTCGACTATGTTAAAAGAATATCTGTATAAACTACAACACCGAG
TTTTAGTTTAAACATATGGGGCTAGAGAAGGCATCTCCACTGATTCAATT
TATCGCTATCTTTATTTTCACgcggcatatttttcaaaatctggcgagta
attttactttcaatttgCCGTTTGTGCGAAAATCACGCTTTAATTCCATC
AAAGAGTTTCAATTCTAGCCCCTTCAggactttaaactcaatggtattAA
CTCTTATCAAGgatttgtagaaataaaaggagcaaaatgatattgaaaat
gttatttcttATTTTGTATTTCTATAGAGCAATCTTTTTATGTATTGTTA
TAGTATTGTATTGTGTATGTATTGTTatattcatgtaaaaataaaatttt
cattcttgATCCCTTAAAATATGGAATGTTTATGTTTAACTCTTGATAAG
GAATAACGATCTTGCATTAACGGCCCCCTTAACGTACTGTCACTCGACGT
TTGTATGTATAGGGTACAATACcacacaaagaaaattgattgcTTTTCAG
CTATCTGTTACTACTTCAAAATAGTAGGGCTTGGTACAGACTATGGTTCT
AGGAAGAAGAAACACATGAAAAACAAAGCACTTGAAAAATAACTAATAGA
AAGCAAAACGCTGAACAAACGAAATTTAAAAGTGTTTATCCTTCGTAAAG
TAGCTACCTCTCTTTATTGGATCATAGAAAACATAAAGGGAACAAAACTT
TATATTCTCTAGACTCTCTTATATTCTTTAGACACTTTGTAGTCTGATTT
GCGCTCCTGCTGGTTTTTTGAATACGTTTTTGGAGTCAGCTGCGAAAGGT
TTtatgaatttaaattttcattttttgggatcttcaaaaatcttagatga
aaattgaaaagatcTCCTTCACCTAGGACAAAATTGTAACAATGGGTTTC
TGGAGGAGTATAAATAGGACAGGCTGGCAGTTCGGAGCCTGGAAGAAATC
ACAACAGTTATAACAAGGGAAAACTATAACAATAAACCTATTGAAAAGgt
aaaacttttattttcaaaatcacaCTCTAGCACCGAAAATTTTCGGTGAT
TACATGAAGTTTGGGGCCATTACATGAAGTTTGTTTCATAGTTATTTATG
CTATCTTTACTGTAAATGTCCAAAACTTTAGCACTTCTATAAACTTAACT
ATAGTTACAAATTCCACATtagtaaaaatagtaaaaacctCAATCATCTC
CAAGTAAAGCAAAGTTTCGGATATGTGTAAACTATAAAGGTCCCTTTttt
acaccctcgaaagtctctcaaaggggtacaaaaaccatttgGCTCGAACA
TACCCGCCCCCACACAAACCTAGTAATCTTGGCCACACAACCGTGAATAA
ACAGTTTGGTTAGTTTTCATGGAATTTTGTAGCACTTTTTGCACAGAGCA
TCTGCAGAAATTATAGTAAGTGAAACCAATGTTTTATGTAACTCATTATT
TTCATAGATGGCGTTAACATCGTACAGTTTTGTCCTTTTGGTTTGTTTAA
TTGCTATCCAGGCTACCTTCTGTCCTACAAAAATCATTTATAATCAATCC
AATCGAAGTCTTTTCCAAAAGTTTGGCAATTGCACATTTACACAAAATGC
TTTTGAAGGGTAAAACGATAAGATTCAAGTTATACCTTATTGGAAAGACA
ATTCTGAGTGgctgaatttgattttttttattggaaatttttatcCAATG
GAAGAAAATCTTCAATCTGTGTTTTGTTGAAACTTTGAACGTTAAAATGT
ATTTAGATTTTGCATATCCTTCTTGGATTAAAAGTTAGAGCCCTAATAGA
GCCGTAATATGAGTCCATTTAGCCCATTTTAATCGATTGTAACTTTAGGT
AAAAAAAATACAGCTTCAGAAAAGAgtaatttaaataattttggGCCCGT
CCGAAAAATCTTCCCTAtttatcttcattttcgaaaCTGTCAATTATATT
TTTGGAGACTTTAATACAATAATATGACCTGttggcaaaagaaaaaaatc
aaaaatcatgaTGACCAAAAAAAATACAAGAGTACAAGATATATTAAATT
GTAGTACAATGCGTGCATCGAAAGtataattcaattttctttttgaaatt
gaatagaaaattgaaaatttttctaatttcttttttcaatatgtgaaaca
aaattgaagaataagtcaaatttgtattttctaTTTGAAATAGGAAATTG
AACTAAAATGATATATTTTGGGAAAAATACGACCAAAAAAGTGAAAGTTT
TATCGCCCGATTCGGAATCAAATGTtcggaaaatcggaaaaatatTTCCC
GCATAAATTCTTGCATCAACCGTTTTATATCTCCCTAATACTAAGCCACG
CAATTTAATCAGACAGCATTTACTTTATGTACACTCTTATTAGCTCCGTA
GTAATTGGCGCACTTGCTTTATGACATTTCTAAATAACGGAGATAATTGG
AACCTTTGAAAGTTACTGACAGTGCAAGCAGCAATATTGTTAAGCTTTAA
GTGATTTTTCAGCTTAACCAACCTAATAAAGCTCAAGCTTTACATATTCT
TTAAATTGAGGTGCGTACGCGCCAAAATCAAATACGAtataaaaaattgt
atttaCCGAGTAATAACAATCAATGGTCGAAACGAAAATTTATATTTCGA
GTTCTttgtctttttcaaaaatttctcatTAATGCATTAAGGTATGATAT
GAGATCTTCCTATTCAAGGTCCTATAGAAGTAAAGCTTGACCTATGTCGG
CCTGCTTTTTCGGTCCACGCGAAAAAAGTcattatattttcttatttgcg
GCGGCAcacatttgaaataaaaatgtcggCATATGTCCCATTTCCATTTA
TTTGCCGGAATTCTTTTTGCAGCATAAAAACTCGAGTTACTTGGAAACGA
ACCTTAAAGTGTAGTGGTAGTTAACCTTTTAAGcatctttgtattttaag
gagaTGGGGAGCATCTGAGAGGAGGACTCGAGCCCCCCCTTAAATTTCCA
AGATTGAAAAGTCTGAAAAAGTGATCTGGAAAGTAAATATGAGGtgaatg
tgaaaattttagttCGGCCAGCTGTCCTTTGGGTAATTCAAATTTATATT
TGGTGCTCACTTGAAAAGTTTTGTGTCAAAGGTTATCAAAGATTTTCACT
TTAAGGAACACGGAAGCTttaaagggctctgaccatagtcaaaagatCGA
ATACGCAGATTTagagataaaacttttgttttgagttccttgacactttt
aacaaaaaatcgtctttataagttgtttctgaatttattctatcaagagt
aattaacagtttaattacaaaaatgacgttatgaaccttAGAAAGATGTc
aataaaatgttatattaccctCTTTTACTGCAAAAGATTGAACTATCTAA
ATATTTTCGGATAAATTTTCTAAATCAATGTTTCAAAAGTTACGACTcta
tttgtgcaaaaaaatggGATGAAGAATTGGTCAAAAGCCacttattttaa
gattttgagacagaaagttttacaaaaattttccgaaaatctattgttag
tttggttaaagatacaccatctagtgcaaaaattttttcaaaatcttttt
acttcgccgaaaataagctcctcaaagttgaaatactgtCTTtgcaaatg
tcttcattttcttcttcatcaaattttttcaatgcaatttttgaattttc
agattcaggaatagttggcttaacagaaaatgtataatatgccatagttt
tgttggttacatcagtcagaaaacacattttaattacgacaattatgaaa
aattcactatggtcagagcccttaagagtTGTTGagtaatattatttttt
tcaccaTCTAATAACACAGTTCTTAATGTTTTGATATCAACTGTCattta
cgtcatcaaaacatatcacagaaaaaatgctGAAACGCTGAcactcctga
aaaaaaaaacgctgAAATTCCAAGAAATCTAAATTTGACTAGCTTATACG
TTTTTAGAAGACCAAATATGACGATGACTTCATTTCCATTGTTCATTGTC
ACAGTATAAATAGAAGCGCAAGAATTGAACAGTATTAAGAAGCTCACCAT
CAGACAGAGAAGATATAAACCACAAGAAGCAGACAACAAAGTTAACTCTT
GGTATCATGATGAAaatcgtttttctttttctggtTTGTTTTGTTCTTCA
ACAAACAAGTTCAAATGAGTTGAAGGAAGGAGGTAAATATGTAACATGTT
CGAACCCAGTAACTCTAATGAAACATAAGGTTTCCTGTTTGAAAACTAGA
TTTTGCCTTTTTAACAACCAGGTTACAAACAACAAATCCATCTTCCCTTG
TTCTTATATCATCTCATCCTTTCTATCTATGAGAAGGAATAGTAAAATTA
AAACAGGAAACCTGACATTTAAAGATCCACATTCAAACATTCAACAACAT
GCTCTGTTTCCCTTTCAGAATCTCACAGCCGTGAACGCAGAGCAGTGTGT
GGTTATCAAAGATATAACACTCGATTTAGGATGTGCTGCAGTGGCAAATT
GGGCCTAAAAGGATCTAACAATGCCTGCTGCGGTCAAACAGGTTATAACA
CTCGATTCAGGATGTGCTGCGGTGGCAAATTGGGCCTAAAAGGATCTAGC
AATACCTGTTGCGGACAAACAGGTTATAACACTCGATTCAGGATATGCTG
CGGTGGTAGATTGGGCTTAAAAGGATCTAACAATGCCTGCTGCGGTCAAA
CAGGCTATAACACTCGATTCAGGATATGCTGCGGTGGCAAATTGGGCTTA
AAAGGATCTAACAATGCCTGCTGCGGTCAAACAGGTTATAACACTCGATT
CAGGATATGCTGCGGTGGCAAATTGGGCTTAAAAGGATCTAACAATGCCT
GCTGCGGTCAAACAGGTTATAACACTCGATTCAGGATATGCTGCGGTGGC
AAATTGGGCTTAAAAGGATCTAACAATGCCTGTTGCGGTCAAACAGGTTA
TAACACTCGATTCAGGATATGCTGCGGTGGTAGATTGGGCTTAAAAGGAT
CTAACAATGCCTGCTGCGGACAAACAGGTTATAACACTCGATTTAGGATG
TGCTGCAATGGTCGACTATGTTAAAAGAATATCTGTATAACTACAGCACC
GAGTTTTAGTTTAAACATATGGGGATAGAGAAGGTATCTCCAGCAacctc
aagcaagaaaaagtgctTCCGGAACGACTGATTTAATTTATcgctttctt
tattttcacgcggcatatttttcaaaatctggcgattaattttactttca
atctgccGTTTGTGCGAAAATCACGCTTTAATTCCATCAAAGAGTTTCAA
TAATAGCCCCTTCAggactttaaactcaatggtattAACTCTTATCAAGg
atttgtagaaataaaaggagcgaaatgatattgaaaatgttatttcttAC
TTTGTATTTCTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009798XLOC_009798Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017520-exon-sc0000269-1491911889:339486..339892TCONS_00017520-exon-sc0000269-1491911889:339486..339892Clytia hemisphaericaexon
TCONS_00017520-exon-sc0000269-1510915933:339486..339892TCONS_00017520-exon-sc0000269-1510915933:339486..339892Clytia hemisphaericaexon
TCONS_00017520-exon-sc0000269-1575043694:339486..339892TCONS_00017520-exon-sc0000269-1575043694:339486..339892Clytia hemisphaericaexon
TCONS_00017520-exon-sc0000269-1491911889:349404..350399TCONS_00017520-exon-sc0000269-1491911889:349404..350399Clytia hemisphaericaexon
TCONS_00017520-exon-sc0000269-1510915933:349404..350399TCONS_00017520-exon-sc0000269-1510915933:349404..350399Clytia hemisphaericaexon
TCONS_00017520-exon-sc0000269-1575043694:349404..350399TCONS_00017520-exon-sc0000269-1575043694:349404..350399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:339486..350399 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.249843	0.0896002	0.254935	0	14.5935	10.5366	58.2898	94.1702	105.714	186.266	115.281	48.5738	24.9094	28.1722	38.1485	52.2856	13.5591	13.9536	72.4664	188.715	19.7564	22.884	38.9235	76.9882	115.985	241.372	206.895	158.606	950.604	651.24
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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