TCONS_00017566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017566
Unique NameTCONS_00017566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017566 ID=TCONS_00017566|Name=TCONS_00017566|organism=Clytia hemisphaerica|type=transcript|length=727bp
CGACTTGATTGTGGATTCTCCAAAAATTGCCAGACAACTTTGAAAAGCCA
ATTATCCGGTTCCTCTTCGATTTTTTCTGGTTCTTTTAATCCGTTATCTA
ATTGCAGTTTtgatatgacgtcatcaccaatATCAAAGAAAATGAGTTCG
TTGATGAAAACGTGGACTGGAATATTTGGTGGCTTCGCCATGATACCTTT
GGATTGATAAAAATATAAGATACTTTCAAAAGTTGGTCGATGACGatcaa
aaaaatattccttCATTTCTTCGCGGTAATAACGACTCCTCCGTTCCGCG
TTACCAAGAAGCGAATCTGGAAACCTTCTCAAAGTGTTTTCCCATGTTTG
GAAACGACGTCCTGAGATGTTTAGAGTGATAATTCTATCATCTGCAGGGT
CGAATACTTCCGGTTCGATGAAGTCAGCAACGGTTGGTTGGTTACCCGGA
TTCAAGAAAGAGTTACGTCGTGCGCTCGCAGCATACATTGTTCAACAGAT
ATTTCAAAGTTTCGTCCACAGAACGAAAAACGATTTCAAATATTGATTCA
GCCAAACCTTCATCAATCTTTACCAATTCTACTGCGGCTACATGCCGGAT
TCTATATCATAAAATATCCAGCAAACAATGTTTTGAAATGAGCTACGTGC
TAGAAATGTATAAGCAGCGACATTTCTTCCTCTAAACAAGATCTTCTTCT
CTTTCGCTAtgaactcactcaaaaatg
Run BLAST on NCBI

protein sequence of TCONS_00017566-protein

>TCONS_00017566-protein ID=TCONS_00017566-protein|Name=TCONS_00017566-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MYAASARRNSFLNPGNQPTVADFIEPEVFDPADDRIITLNISGRRFQTWE
NTLRRFPDSLLGNAERRSRYYREEMKEYFFDRHRPTFESILYFYQSKGIM
AKPPNIPVHVFINELIFFDIGDDVISKLQLDNGLKEPEKIEEEPDNWLFK
VVWQFLENPQSS
Run BLAST on NCBI

transcript from alignment at sc0000269:149638..150364

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017566 ID=TCONS_00017566|Name=TCONS_00017566|organism=Clytia hemisphaerica|type=transcript|length=727bp|location=Sequence derived from alignment at sc0000269:149638..150364 (Clytia hemisphaerica)
catttttgagtgagttcaTAGCGAAAGAGAAGAAGATCTTGTTTAGAGGA
AGAAATGTCGCTGCTTATACATTTCTAGCACGTAGCTCATTTCAAAACAT
TGTTTGCTGGATATTTTATGATATAGAATCCGGCATGTAGCCGCAGTAGA
ATTGGTAAAGATTGATGAAGGTTTGGCTGAATCAATATTTGAAATCGTTT
TTCGTTCTGTGGACGAAACTTTGAAATATCTGTTGAACAATGTATGCTGC
GAGCGCACGACGTAACTCTTTCTTGAATCCGGGTAACCAACCAACCGTTG
CTGACTTCATCGAACCGGAAGTATTCGACCCTGCAGATGATAGAATTATC
ACTCTAAACATCTCAGGACGTCGTTTCCAAACATGGGAAAACACTTTGAG
AAGGTTTCCAGATTCGCTTCTTGGTAACGCGGAACGGAGGAGTCGTTATT
ACCGCGAAGAAATGaaggaatatttttttgatCGTCATCGACCAACTTTT
GAAAGTATCTTATATTTTTATCAATCCAAAGGTATCATGGCGAAGCCACC
AAATATTCCAGTCCACGTTTTCATCAACGAACTCATTTTCTTTGATattg
gtgatgacgtcatatcaAAACTGCAATTAGATAACGGATTAAAAGAACCA
GAAAAAATCGAAGAGGAACCGGATAATTGGCTTTTCAAAGTTGTCTGGCA
ATTTTTGGAGAATCCACAATCAAGTCG

Coding sequence (CDS) from alignment at sc0000269:149638..150364

>TCONS_00017566 ID=TCONS_00017566|Name=TCONS_00017566|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at sc0000269:149638..150364 (Clytia hemisphaerica)
ATGTATGCTGCGAGCGCACGACGTAACTCTTTCTTGAATCCGGGTAACCA
ACCAACCGTTGCTGACTTCATCGAACCGGAAGTATTCGACCCTGCAGATG
ATAGAATTATCACTCTAAACATCTCAGGACGTCGTTTCCAAACATGGGAA
AACACTTTGAGAAGGTTTCCAGATTCGCTTCTTGGTAACGCGGAACGGAG
GAGTCGTTATTACCGCGAAGAAATGaaggaatatttttttgatCGTCATC
GACCAACTTTTGAAAGTATCTTATATTTTTATCAATCCAAAGGTATCATG
GCGAAGCCACCAAATATTCCAGTCCACGTTTTCATCAACGAACTCATTTT
CTTTGATattggtgatgacgtcatatcaAAACTGCAATTAGATAACGGAT
TAAAAGAACCAGAAAAAATCGAAGAGGAACCGGATAATTGGCTTTTCAAA
GTTGTCTGGCAATTTTTGGAGAATCCACAATCAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009823XLOC_009823Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017566-proteinTCONS_00017566-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017566-exon-sc0000269-1491911889:149638..150364TCONS_00017566-exon-sc0000269-1491911889:149638..150364Clytia hemisphaericaexon
TCONS_00017566-exon-sc0000269-1510915933:149638..150364TCONS_00017566-exon-sc0000269-1510915933:149638..150364Clytia hemisphaericaexon
TCONS_00017566-exon-sc0000269-1575043694:149638..150364TCONS_00017566-exon-sc0000269-1575043694:149638..150364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:149638..150364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.072986	0	0.412178	0.34629	0.285958	0.902062	0.364911	2.73303	2.79097	0.855598	1.83637	0.514151	0.474289	2.47541	1.37136	0.595979	0.968992	0.392646	0.928127	1.02948	0.656278	0.0939132	0.100227	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR000210BTB/POZ_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
Blast
[Close]
BLAST of TCONS_00017566 vs. Swiss-Prot (Human)
Match: KCNA7 (Potassium voltage-gated channel subfamily A member 7 OS=Homo sapiens GN=KCNA7 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.718e-30
Identity = 52/126 (41.27%), Postives = 83/126 (65.87%), Query Frame = -3 
Query:    3 ITLNISGRRFQTWENTLRRFPDSLLGNAERRSRYYREEMKEYFFDRHRPTFESILYFYQSKGIMAKPPNIPVHVFINELIFFDIGDDVISKLQLDNGLKEPEKIEEEPDNWLFKVVWQFLENPQSS 380
            + LN++G RF+T   TL RFPD+LLG+  RR R+Y +  +EYFFDRHRP+F+++LY+YQS G + +P ++P+ VF+ E+ F+ +G   +++L+ D G   P +    P     + +W   E P+SS
Sbjct:   15 LVLNVAGLRFETRARTLGRFPDTLLGDPARRGRFYDDARREYFFDRHRPSFDAVLYYYQSGGRLRRPAHVPLDVFLEEVAFYGLGAAALARLREDEGCPVPPE-RPLPRRAFARQLWLLFEFPESS 139
The following BLAST results are available for this feature:
BLAST of TCONS_00017566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA73.718e-3041.27Potassium voltage-gated channel subfamily A member... [more]
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