TCONS_00017584 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017584
Unique NameTCONS_00017584
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1174

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017584 ID=TCONS_00017584|Name=TCONS_00017584|organism=Clytia hemisphaerica|type=transcript|length=1174bp
CGAGATTGTCTCGTGTGTGAGAAAGAGGTGGATGTGTTTTATTTAAAGGA
AGATTCTGTCAAGATACAGCATGAAGTTACAGAGCATGTTGGCCATTGCC
TTTACGTTGGTTGTTTTTGCAGAGGCTTATAATTTCAATCATGATATGGG
CGCTAAATTAGATGGGCGTATTATCCACGTGGAGTCGTTGAGATATAGAG
GTCATTGGTTGAAATCATCGTTTCACAACGGTGGTAAATGGATTGCTGTT
TATGGATTGGCTCAAAGAGATACCTATTATACACAATGGTCGCAATTTAA
GGTCAAACACGTGGGAGGTGGTAAGGTGACGATCGAATCAATGACCTATC
CACACCACTACTTTGACTCTCATTACTCTGGATGGGTTGGGACTACTTAC
TCCACATACCCTGATAATCAGGCTTGGGCTCAATGGAAAATTTATTGCAC
CAGTCAATCAATGGATGTTTGTCGTTTTGAATCGATGAGATATCGAGGAC
ATTACTTCGACTCCAGTCACACCGGAGGTCTTGGAGTTGCAAGATATGGC
AATGGTTGGTCAAGGTTCCGAATTTTAGCACCAAACGCTGAAGATTACTA
TGTGACAATCCTTTCTACAGAGAATCACAGCAGTGCTTCATCCAAGAAAA
CATTAACAGTTGAAGAAGGGGTGATTGACTCAACAACCACCGAAAATACC
ATCACCACCTCTGTCTCTGTTGAAGTTCAAAAAGCTTTCGTCACTGCATC
AGCCTCCGTTACTCATGAATGGAAGCAAACTGAATCGAAGACATTCGAGA
AACGAACCTCATTCACATACGAAGTTCCCATCCCTGCTCGTTCAAAGATC
GAGGTCAAACAACTAACCGGTGAATACGGTCCTTTCCGAATCAAAGTCAA
CAAATTCATCATTAAAGAAACGAAACTCGATGGACGCAAACGTGGACTTA
TCGAAGAATTTGACGGATACTTGATTGACTACTAAAAAGGAAATTCTCCA
CCCAATTTGATATGAAATCGTAAACTCATTTCAGAGGAGCTGTATTTCGA
ATTATATATCTTTCTTGACTTGTAATATTTGTTAGCGTTCTACTTTGCTA
AAATATGACTTTTAGATAATGGACATGCTCATTTATTTGATTGACCTTTC
CCTGTTTTTAAGAGTTTCCATCAC
Run BLAST on NCBI

transcript from alignment at sc0000271:48591..53406+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017584 ID=TCONS_00017584|Name=TCONS_00017584|organism=Clytia hemisphaerica|type=transcript|length=4816bp|location=Sequence derived from alignment at sc0000271:48591..53406+ (Clytia hemisphaerica)
CGAGATTGTCTCGTGTGTGAGAAAGAGGTGGATGTGTTTTATTTAAAGTa
gcattttacattttttgttttccgACTTCTTGTTGGTTTAATTCGATAAT
TTTTAATCTCTGGAATGGTATTTAACAGATTTCAGTCCTTTTTGACGACT
GACCATATATTCATAAATTGGATAACGAACTATAAATATCTTTCAGGGAA
GATTCTGTCAAGATACAGCATGAAGTTACAGAGCATGTTGGCCATTGCCT
TTACGTTGTAAGTAGATATTCAGTAAAAATGTTTTCCTGTTTATTCACCG
GATTTTAGACTCTACTGTAATCCCCAAAAACTTTCAGACACTATAGAGAC
TTTATGTTGTATTTTCGCCGTCTAAGTCAGGGAGGAATATTTCACTATTT
TTTAATCCATCCAAAAACGTTTGGCTTTCTGTTCCTTTAAGCCAACATTA
TTTGAAGGCACTGCTCTTGATTTTCTCTGTGCAGGGTTGTTTTTGCAGAG
GCTTATAATTTCAATCATGATATGGGCGCTAAATTAGATGGGCGTATTAT
CCACGTGGAGTCGTTGAGATATAGAGGTCATTGGTTGAAATCATCGTTTC
ACAACGGTGGTAAATGGATTGCTGTTTATGGATTGGCTCAAAGAGATACC
TATTATACACAATGGTCGCAATTTAAGGTGAGCAACTATTAATTTTCACA
TGTGTTTTCTCAGAAAGATGCCCCCCCCCCGACAATGTCATCaaactttt
cgaaatttaatCTAGTTACATTGTGTCATCAATAATGTTATGACCTATTT
TTGTGGTCTTTTCGCAAAAATACGGGTGAAAGCAATTAAAGTCTGTCACA
AAAATTGGAAGTTTGTGCTTTTGAGCATTAACATAATGCACTTAGAATTA
TTTTTCCAACGAGGAATTTCTTTGAATTCCATCTTTTTTTCAGTTGAGag
taatctttaaaaaagattctttgaaaCTGACTTGACGTTATAGTTTCCAG
AGTGGAAAAACATACACTCTTTTTACTTTATACGCATCgcacttataagc
atacgcAGGCTCAGATGAGGCAAAAATATAAGCGTATGCTAAgccttcat
tttcagattttgcctgtttttggctgaattttatgtttttcgGTATTTCT
CTAAAACATTGCCTATGATTTAAGCAtctttgaaagctttttttACAGCC
TTCTCAAGCCTTAAGCATCTCCAAacctttcaaatttttgtatgcttata
aaaatacatTTATCCTTCGTGTTCAGTCATTTGGTTTGTTCGACAGGCTA
ATGTGTGTTCCTTAAAATTATAATTGActcttaacatttttgaaacGACC
CATTTTATCAAAGTCACCTTTCGAAATTTACGATATTCATGCCGTATTTT
TCACTAGTTTTgttgttaaaaaattcaaaaatagtgGTAAAAACCTGGTC
TTTTGGGGTGCTTCCCTCTGAAGCATTATGTCATAAATAACACGACATTA
TTTTCATACAGGTCAAACACGTGGGAGGTGGTAAGGTGACGATCGAATCA
ATGACCTATCCACACCACTACTTTGACTCTCATTACTCTGGATGGGTTGG
GACTACTTACTCCACATACCCTGATAATCAGGTTTGTTAGTGTTTTGACT
AAATAACATGCACgtcccgaatagtagggggTCAGAATAAAAGGAGGgtc
caaatatttttttaaatcttataaACAGAGGGAGNAGCATTAACATAATG
CACTTAGAATTATTTTTCCAACGAGGAATTTCTTTGAATTCCATCTTTTT
TTCAGTTGAGagtaatctttaaaaaagtacTAATTCTTTGAAACAGACAT
GACGTTATAGTTTCCAGAGTGGAAAAACATACACTCTTTTTACTTTATAC
GCATCgcacttataagcatacgcAGGCTCAGATGAGGCAAAAATTTAAGC
GTATGCTAAgccttcattttcagattttgcttgtttttggctgaatttta
tgtttttcgGTATTTCTCTAAAACATTGCCTATGATTTAAGCAtctttga
aagctttttttACAGCCTTCTCAAGCCTTAAGCATCTCCAAacctttcaa
atttttgtatgcttataaaaatacatTTATCCTTCGTGTTCAGTCATTTG
GTTTGTTCGACAGGCTAATGTGTGTTCCTTAAAATTATAATTGActctta
acatttttgaaacGACCCATTTTATCAAAGTCACCTTTCGAAATTTACGA
TATTCATGCCGTATTTTTCACTAGTTTTgttgttaaaaaattcaaaaata
gtgGTAAAAACCTGGTCTTTTGGGGTGCTTCCCTCTGAAGCATTATGTCA
TAAATAACACGACATTATTTTCATACAGGTCAAACACGTGGGAGGTGGTA
AGGTGACGATCGAATCAATGACCTATCCACACCACTACTTTGACTCTCAT
TACTCTGGATGGGTTGGGACTACTTACTCCACATACCCTGATAATCAGGT
TTGTTAGTGTTTTGACTAAATAACATGCACGTCTCGAATAGTAGGGGGTC
AGAATAAAAGGAGGgtccaaatatttttttaaatcttataaACAGAGGGA
GTTCGAAATTACACCCCAAAAActccaaaataaggtaattataaGCTAAA
AACAGGCTTAGAGCAATTTAGCCTGTATTAACcgaaagtattttcaaaaa
tatataaacggggacctaaaaattttattgaaagttAATAACTAGGTGGG
GACGTTTGTTCGGGACCTTAGAGCAATGTCATTACTCTGACTAGTACATT
CCCGTGTTGTTGATACCCCTGTCTCAGCCATCTTACAAAAATTTGATGCC
AGTTGGAAGTTAAATACAGACGACGATAGAAAAGCATGTTTTAGTAAGGG
GAATCTTCAGCTTTGTTTATACTACCGTGTAAATCATTGTATTTAAcatc
ttaaaaattattttgtatatAATGAAAGGCTTGGGCTCAATGGAAAATTT
ATTGCACCAGTCAATCAATGGATGTTTGTCGTTTTGAATCGATGAGATAT
CGAGGACATTACTTCGACTCCAGTCACACCGGAGGTCTTGGAGTTGCAAG
ATATGGCAATGGTTGGTCAAGGTTCCGAATTTTAGCACCAAACGCTGAAG
ATTACTATGTGTGAGTTCTAGTTCTTCTGTTTTATTCTCCTCAGCTTGGA
AATATTTACTTACATAGCACCTCTAACCTTTCTCCCACTCCCATGTAAAG
TGAGCAAAAATTTTAAGCAGTATCAGAGGCACGCCTCCttttctatatca
taaaaacCAACTATGTTCACTTAAAAGTCCTATCTATACcgtttttgaga
gctttcgattgGTATAAGTGGTTTCGGGTTTTATTGACCTTGAAATTTCT
TCAAATGCctgtgacgtcagtttttgGGTCCTAAAAAAATTCCCAGACGT
AAGCAAACAACCCCCTTCGCGGAAATCCCTTTAGATTTCCATACATTGAA
ATGGACCAGGTTTGGTTGCGTAGCATAAAAGTTGGCACGGGTCCTAAGGG
TTTGCCCCCTATTACCATAAGGACAAACAAACAGACTGCGTTTGTTTCAG
ATGATGAATATCCGGCTGGTTTTTTGTACTGCTCAAAATCATAACAATAG
TTTTATCCCACGTTTGAGAATCTCCAAGATAACCGCGTTCAGCTACAATA
CTACAAtatataaaacaatttttttttccttcgcAGGACAATCCTTTCTA
CAGAGAATCACAGCAGTGCTTCATCCAAGAAAACATTAACAGTTGAAGAA
GGGGTGATTGACTCAACAACCACCGAAAATACCATCACCACCTCTGTCTC
TGTTGAAGTTCAAAAAGCTTTCGTCACTGCATCAGCCTCCGTTACTCATG
AATGGAAGGTGTGCTAAACGTTTTTCACTGACCTTTTTTATAAAAGTCTA
ATTCCGGCCTAGGAAAATCTTtcaatcggattttttttttaaaaatgtaa
ctACTGCATAATAGCGGTGCAACGCTTCGAAAGCGGTAGATCTACTTTTC
TATGCGAAATTGCGATGTTGCGCCATTTGATGTTTTAACACTCCAAtggg
cttctttacgggtacctcTTTCATAAAAATTCCGACCAAAGATGGCagaa
tataatttgtataaagGTTGGTGGATTTTCCCTATCAAGGTCTATTCATA
AACTCTATTTTAGCCCTAATGTTATTTCCTCTACCTGGATCTCAAATCTC
AAAGTTTATACAAACTGGttccttgaaaaataaaagattattCGATTGGC
CTTTAAATAAAGTGGCCTGGATGTTTTAACCTTTAATCTTTTAAGGATTG
GAAATTCAGATATCTACTTTTTTAGGAGTTTAAGGGTTAATTCCACAACC
TTTTCTTCATTTAACAGCAAACTGAATCGAAGACATTCGAGAAACGAACC
TCATTCACATACGAAGTTCCCATCCCTGCTCGTTCAAAGATCGAGGTCAA
ACAACTAACCGGTGAATACGGTCCTTTCCGAATCAAAGTCAACAAATTCA
TCATTAAAGAAACGAAACTCGATGGACGCAAACGTGGACTTATCGAAGAA
TTTGACGGATACTTGATTGACTACTAAAAAGGAAATTCTCCACCCAATTT
GATATGAAATCGTAAACTCATTTCAGAGGAGCTGTATTTCGAATTATATA
TCTTTCTTGACTTGTAATATTTGTTAGCGTTCTACTTTGCTAAAATATGA
CTTTTAGATAATGGACATGCTCATTTATTTGATTGACCTTTCCCTGTTTT
TAAGAGTTTCCATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009834XLOC_009834Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017584-exon-sc0000271-1491911889:48591..48637TCONS_00017584-exon-sc0000271-1491911889:48591..48637Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1510915933:48591..48637TCONS_00017584-exon-sc0000271-1510915933:48591..48637Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1575043694:48591..48637TCONS_00017584-exon-sc0000271-1575043694:48591..48637Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1491911889:48787..48847TCONS_00017584-exon-sc0000271-1491911889:48787..48847Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1510915933:48787..48847TCONS_00017584-exon-sc0000271-1510915933:48787..48847Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1575043694:48787..48847TCONS_00017584-exon-sc0000271-1575043694:48787..48847Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1491911889:49075..49267TCONS_00017584-exon-sc0000271-1491911889:49075..49267Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1510915933:49075..49267TCONS_00017584-exon-sc0000271-1510915933:49075..49267Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1575043694:49075..49267TCONS_00017584-exon-sc0000271-1575043694:49075..49267Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1491911889:50969..51088TCONS_00017584-exon-sc0000271-1491911889:50969..51088Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1510915933:50969..51088TCONS_00017584-exon-sc0000271-1510915933:50969..51088Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1575043694:50969..51088TCONS_00017584-exon-sc0000271-1575043694:50969..51088Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1491911889:51569..51750TCONS_00017584-exon-sc0000271-1491911889:51569..51750Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1510915933:51569..51750TCONS_00017584-exon-sc0000271-1510915933:51569..51750Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1575043694:51569..51750TCONS_00017584-exon-sc0000271-1575043694:51569..51750Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1491911889:52327..52498TCONS_00017584-exon-sc0000271-1491911889:52327..52498Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1510915933:52327..52498TCONS_00017584-exon-sc0000271-1510915933:52327..52498Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1575043694:52327..52498TCONS_00017584-exon-sc0000271-1575043694:52327..52498Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1491911889:53008..53406TCONS_00017584-exon-sc0000271-1491911889:53008..53406Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1510915933:53008..53406TCONS_00017584-exon-sc0000271-1510915933:53008..53406Clytia hemisphaericaexon
TCONS_00017584-exon-sc0000271-1575043694:53008..53406TCONS_00017584-exon-sc0000271-1575043694:53008..53406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:48591..53406 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
667.7	675.19	623.405	537.114	0	0	6.93503e-05	0	0	0	0	3.27794e-10	0	0	0.0834521	0.201501	0	0	0	0.331929	0	0	270.339	212.927	0.117338	0	11.148	10.932	107.255	149.549
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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