TCONS_00017648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017648
Unique NameTCONS_00017648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017648 ID=TCONS_00017648|Name=TCONS_00017648|organism=Clytia hemisphaerica|type=transcript|length=465bp
CCTGATGACAAACAGAGCATACCATCTCAAGATGATGAAACAGGATCGCT
TTTACTTGGTGCAACAGCTCTATCCCCAACACGTCGCTACCCAAAAAGAG
AAAGACAACTAACTGAGAAGGGTAAGAAATCACGCATTCAACACTTATTT
GCTGAACGAAAAAGACTTCTCAACAGATTAGAGAAACGAGGCAAGTCTAT
GATGGAAACATTAGCCCTGCTGGATCAAAGTCTTATCAAGAGTCGACTTC
AACAGTACAACGAGACAGCATTAACTTTCGAGGGCACTCACAATGAGCTG
AACGAGTTACTCGACCCACACGAAAAGGCTGAAGACCAGTATTGGTTTAC
CACAGTTGATGATCAAATCAATGTCGTAAAACAGTCAGTTTACGACAGAA
TACAGACATTAAATCttcaagaagaagaaagaagcaCTGCACCATCACGT
AAATCTTTGCAATCA
Run BLAST on NCBI

protein sequence of TCONS_00017648-protein

>TCONS_00017648-protein ID=TCONS_00017648-protein|Name=TCONS_00017648-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
PDDKQSIPSQDDETGSLLLGATALSPTRRYPKRERQLTEKGKKSRIQHLF
AERKRLLNRLEKRGKSMMETLALLDQSLIKSRLQQYNETALTFEGTHNEL
NELLDPHEKAEDQYWFTTVDDQINVVKQSVYDRIQTLNLQEEERSTAPSR
KSLQS
Run BLAST on NCBI

transcript from alignment at sc0000271:100902..101366

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017648 ID=TCONS_00017648|Name=TCONS_00017648|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at sc0000271:100902..101366 (Clytia hemisphaerica)
TGATTGCAAAGATTTACGTGATGGTGCAGtgcttctttcttcttcttgaa
GATTTAATGTCTGTATTCTGTCGTAAACTGACTGTTTTACGACATTGATT
TGATCATCAACTGTGGTAAACCAATACTGGTCTTCAGCCTTTTCGTGTGG
GTCGAGTAACTCGTTCAGCTCATTGTGAGTGCCCTCGAAAGTTAATGCTG
TCTCGTTGTACTGTTGAAGTCGACTCTTGATAAGACTTTGATCCAGCAGG
GCTAATGTTTCCATCATAGACTTGCCTCGTTTCTCTAATCTGTTGAGAAG
TCTTTTTCGTTCAGCAAATAAGTGTTGAATGCGTGATTTCTTACCCTTCT
CAGTTAGTTGTCTTTCTCTTTTTGGGTAGCGACGTGTTGGGGATAGAGCT
GTTGCACCAAGTAAAAGCGATCCTGTTTCATCATCTTGAGATGGTATGCT
CTGTTTGTCATCAGG

Coding sequence (CDS) from alignment at sc0000271:100902..101366

>TCONS_00017648 ID=TCONS_00017648|Name=TCONS_00017648|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000271:100902..101366 (Clytia hemisphaerica)
TGATTGCAAAGATTTACGTGATGGTGCAGtgcttctttcttcttcttgaa
GATTTAATGTCTGTATTCTGTCGTAAACTGACTGTTTTACGACATTGATT
TGATCATCAACTGTGGTAAACCAATACTGGTCTTCAGCCTTTTCGTGTGG
GTCGAGTAACTCGTTCAGCTCATTGTGAGTGCCCTCGAAAGTTAATGCTG
TCTCGTTGTACTGTTGAAGTCGACTCTTGATAAGACTTTGATCCAGCAGG
GCTAATGTTTCCATCATAGACTTGCCTCGTTTCTCTAATCTGTTGAGAAG
TCTTTTTCGTTCAGCAAATAAGTGTTGAATGCGTGATTTCTTACCCTTCT
CAGTTAGTTGTCTTTCTCTTTTTGGGTAGCGACGTGTTGGGGATAGAGCT
GTTGCACCAAGTAAAAGCGATCCTGTTTCATCATCTTGAGATGGTATGCT
CTGTTTGTCATCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009865XLOC_009865Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017648-exon-sc0000271-1491911889:100902..101366TCONS_00017648-exon-sc0000271-1491911889:100902..101366Clytia hemisphaericaexon
TCONS_00017648-exon-sc0000271-1510915933:100902..101366TCONS_00017648-exon-sc0000271-1510915933:100902..101366Clytia hemisphaericaexon
TCONS_00017648-exon-sc0000271-1575043694:100902..101366TCONS_00017648-exon-sc0000271-1575043694:100902..101366Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017648-proteinTCONS_00017648-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:100902..101366 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10868	1.58705	1.16698	1.02265	1.30823	0.886096	0.890864	0.422648	0.583914	1.49859	2.10608	0.830671	0.221384	0.392981	0.674265	0.0844498	0.520176	0.106633	0.294638	0.534083	0.535967	0	0.158899	0.667892	1.04155	1.99191	0	0.405605	0.461455	0.9403
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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