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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017660 ID=TCONS_00017660|Name=TCONS_00017660|organism=Clytia hemisphaerica|type=transcript|length=1155bp
AGGCAATCGTTAAACAGAGGATAGAGGAAACTGAAGTTACCACCAAAACC
GttGCTATTCAAACTGAAAACGTAAATGACACGAGCAAAAATGATACGAA
CCAATTATTACATCAAGTCCTGAAATCGAATGAAGAAATCAAAGATATGG
TGCTACATCTCAAAAATGAAGTGGACATGATCAAAAAATTTATCTGTAAC
AAGAAGGCCACATTCAACCACCACCACCCCAATGCAAACCCAAACCCAAA
CCCAAACCCGAACGCAAACCCAAACCCAAACCCAAACccacaaccacaac
aacaaaaagaaattcaacCAAGTCAAGAGAGCGAGATTGACAGTTTTTTC
GAGGAAAATATCAGCTACATATCACTGATGACAGACGATGATTTGTTTCC
CAGCTTACAACAAGAGGAAGCGGTGGAATAGGAAGCGGTGGAATAGGAAG
CGGTGGAAGAGGAAGCGGTGGAAGAGGAAGCGGtggaagaagaaacaaaa
acggACAATGAAGAAAGTTCTCTGCCTGGTGCCCCCAACAAAAAAGAGAA
GAACAGTCAACCAAGCGAAGCGGATGCTAAAAAGGGAGCTCCATAATTCC
TTCTCCCAGCACGAGTTGGCGACACACCGTTTCACAGCGGTGAATCGTAC
GTTCAAAGGTCAAGAAATCATTTGCGATGCGCTGTCGCCAACTCGGCTGA
ACAGGGCAATTGCCAAAGTTGACCAAAAACACCCTTTGGATATGGCTGAC
ATTCGAGCAAGAAATGAATTGGGCGAAACCATAAACCAAAAATGTAGGGC
AGCCGTGAGAGCCACGGCTGCCCTacatcaagattttcctgactcgctaa
tatacgctaaaattagtcccgctaaaatttctacgattaaagtataaaTT
TTATAACATCATTGTTCTACAcgctattttataagaatacatttAACATG
ACCATCCATcgtgaaaatggcaaaaaatttaagaaatatgctaagaatat
caccatcatggaatttggaaaCTGAAGCTAATATTAATGCCATTtgtaga
gcattttcaattataacctaagaatgtaagaacatttttgaatgattttc
ccaaaaaagttacaaaaagaaTACCCATGAtgatacaccattcttataaa
aaaac Run BLAST on NCBI protein sequence of TCONS_00017660-protein >TCONS_00017660-protein ID=TCONS_00017660-protein|Name=TCONS_00017660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
AIVKQRIEETEVTTKTVAIQTENVNDTSKNDTNQLLHQVLKSNEEIKDMV
LHLKNEVDMIKKFICNKKATFNHHHPNANPNPNPNPNANPNPNPNPQPQQ
QKEIQPSQESEIDSFFEENISYISLMTDDDLFPSLQQEEAVE Run BLAST on NCBI transcript from alignment at sc0000273:17279..19907+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017660 ID=TCONS_00017660|Name=TCONS_00017660|organism=Clytia hemisphaerica|type=transcript|length=2629bp|location=Sequence derived from alignment at sc0000273:17279..19907+ (Clytia hemisphaerica)
AGGCAATCGTTAAACAGAGGATAGAGGAAACTGAAGTTACCACCAAAACC
GGTATATATTTTCGCTTAGTTATAAGGCCGCTTTATGCGTGTCAAAAATC
CGGGCTACATGACCTACAGGTAGCTAGTTATAAAAAGTgcaacaaacttg
taaaacaatcaaaagtagccatatttggtttgattttttattttgacatg
tgacatttgttttgattttgtatcagcatacagtttgtttacaatttcgc
aagtactgttttGTCCCTTTAAAATGTATGTATTTTATTtgagtcatttt
tttcttcttttttttttccagttGCTATTCAAACTGAAAACGTAAATGAC
ACGAGCAAAAATGATACGAACCAATTATTACATCAAGTCCTGGTAATTTT
AATTTACATATAGTAAGTAGTATAGAATTTTTAAggtcttaagggctctg
accatagtcagaaaattaattttagtatctgaacataaaagttatgtttt
agattctttaacacttttaacaaagaattgcctttataaattgcttttta
atcaaacccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Nctttaaaaagacgttaataatatgttgcatcaccttcttttataaaaag
tgctaagttttaatgggtaattaacctttttgtttcgaacttctTTCAAA
CTgaccgcaaagaattgaactattttaaattttgcagaaaatttttctaa
aaagagttgtcaaaagttatgaccgtttttttaagcaaaatccagatgaa
aaattgatgaaaaaccactattttgaagatttcgagacaaagaagcattt
acaaaaattttccgcaaaaatttttattgttcggtaaaagatacaccatc
tactgcgaaaaatttttcaggaTGTTCTTTCTTCGctgaaactaagctct
tcaaagttgaaatactcttcctcgcaaaagtcttcattttcttcttcatc
aaacttttttcaatgcaatttttgaattttcagattcaggaatagtttgt
ctaacagaaaatgtatcacatgccatagttttgttggttacatcagtcag
aaacacattttaaacacggcaattatgaaaaaattcactatggtcagagc
ccttaagtataATTTTACGTgtatgtgaaaaaagctttacaaaAGAAGGA
TACTGTTTTCCAATCAATTTATCGTGTATTTGCTCTAAGGAGGGGGCTTT
TTTTATACCGTACCAGCTGAAGACTTTTGTTTTATATCTTCATAAATATC
AATATTAAATCCTAATCATTTTGCGACTTTTCCTAACAAAACTTCAAAGA
CAGTCGGCATTTGCCGAGATTCACCTTATTATGAGAATAAGCGGTACAAT
TTTTTCATGTCACACTAAAATCAATCCCATTACAACTCTTTTTAAGAAAT
CGAATGAAGAAATCAAAGATATGGTGCTACATCTCAAAAATGAAGTGGAC
ATGATCAAAAAATTTATCTGTAACAAGAAGGCCACATTCAACCACCACCA
CCCCAATGCAAACCCAAACCCAAACCCAAACCCGAACGCAAACCCAAACC
CAAACCCAAACccacaaccacaacaacaaaaagaaattcaacCAAGTCAA
GAGAGCGAGATTGACAGTTTTTTCGAGGAAAATATCAGCTACATATCACT
GATGACAGACGATGATTTGTTTCCCAGCTTACAACAAGAGGAAGCGGTGG
AATAGGAAGCGGTGGAATAGGAAGCGGTGGAAGAGGAAGCGGTGGAAGAG
GAAGCGGtggaagaagaaacaaaaacggACAATGAAGAAAGTTCTCTGCC
TGGTGCCCCCAACAAAAAAGAGAAGAACAGTCAACCAAGCGAAGCGGATG
CTAAAAAGGGAGCTCCATAATTCCTTCTCCCAGCACGAGTTGGCGACACA
CCGTTTCACAGCGGTGAATCGTACGTTCAAAGGTCAAGAAATCATTTGCG
ATGCGCTGTCGCCAACTCGGCTGAACAGGGCAATTGCCAAAGTTGACCAA
AAACACCCTTTGGATATGGCTGACATTCGAGCAAGAAATGAATTGGGCGA
AACCATAAACCAAAAATGTAGGGCAGCCGTGAGAGCCACGGCTGCCCTac
atcaagattttcctgactcgctaatatacgctaaaattagtcccgctaaa
atttctacgattaaagtataaaTTTTATAACATCATTGTTCTACAcgcta
ttttataagaatacatttAACATGACCATCCATcgtgaaaatggcaaaaa
atttaagaaatatgctaagaatatcaccatcatggaatttggaaaCTGAA
GCTAATATTAATGCCATTtgtagagcattttcaattataacctaagaatg
taagaacatttttgaatgattttcccaaaaaagttacaaaaagaaTACCC
ATGAtgatacaccattcttataaaaaaac Coding sequence (CDS) from alignment at sc0000273:17279..19907+ >TCONS_00017660 ID=TCONS_00017660|Name=TCONS_00017660|organism=Clytia hemisphaerica|type=CDS|length=1287bp|location=Sequence derived from alignment at sc0000273:17279..19907+ (Clytia hemisphaerica)
GCAATCGTTAAACAGAGGATAGAGGAAACTGAAGTTACCACCAAAACCGt
tGCTATTCAAACTGAAAACGTAAATGACACGAGCAAAAATGATACGAACC
AATTATTACATCAAGTCCTGAAATCGAATGAAGAAATCAAAGATATGGTG
CTACATCTCAAAAATGAAGTGGACATGATCAAAAAATTTATCTGTAACAA
GAAGGCCACATTCAACCACCACCACCCCAATGCAAACCCAAACCCAAACC
CAAACCCGAACGCAAACCCAAACCCAAACCCAAACccacaaccacaacaa
caaaaagaaattcaacCAAGTCAAGAGAGCGAGATTGACAGTTTTTTCGA
GGAAAATATCAGCTACATATCACTGATGACAGACGATGATTTGTTTCCCA
GCTTACAACAAGAGGAAGCGGTGGAATAGGCAATCGTTAAACAGAGGATA
GAGGAAACTGAAGTTACCACCAAAACCGttGCTATTCAAACTGAAAACGT
AAATGACACGAGCAAAAATGATACGAACCAATTATTACATCAAGTCCTGA
AATCGAATGAAGAAATCAAAGATATGGTGCTACATCTCAAAAATGAAGTG
GACATGATCAAAAAATTTATCTGTAACAAGAAGGCCACATTCAACCACCA
CCACCCCAATGCAAACCCAAACCCAAACCCAAACCCGAACGCAAACCCAA
ACCCAAACCCAAACccacaaccacaacaacaaaaagaaattcaacCAAGT
CAAGAGAGCGAGATTGACAGTTTTTTCGAGGAAAATATCAGCTACATATC
ACTGATGACAGACGATGATTTGTTTCCCAGCTTACAACAAGAGGAAGCGG
TGGAATAGGCAATCGTTAAACAGAGGATAGAGGAAACTGAAGTTACCACC
AAAACCGttGCTATTCAAACTGAAAACGTAAATGACACGAGCAAAAATGA
TACGAACCAATTATTACATCAAGTCCTGAAATCGAATGAAGAAATCAAAG
ATATGGTGCTACATCTCAAAAATGAAGTGGACATGATCAAAAAATTTATC
TGTAACAAGAAGGCCACATTCAACCACCACCACCCCAATGCAAACCCAAA
CCCAAACCCAAACCCGAACGCAAACCCAAACCCAAACCCAAACccacaac
cacaacaacaaaaagaaattcaacCAAGTCAAGAGAGCGAGATTGACAGT
TTTTTCGAGGAAAATATCAGCTACATATCACTGATGACAGACGATGATTT
GTTTCCCAGCTTACAACAAGAGGAAGCGGTGGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017660-exon-sc0000273-1491911889:17279..17329 | TCONS_00017660-exon-sc0000273-1491911889:17279..17329 | Clytia hemisphaerica | exon |
| TCONS_00017660-exon-sc0000273-1510915933:17279..17329 | TCONS_00017660-exon-sc0000273-1510915933:17279..17329 | Clytia hemisphaerica | exon |
| TCONS_00017660-exon-sc0000273-1575043694:17279..17329 | TCONS_00017660-exon-sc0000273-1575043694:17279..17329 | Clytia hemisphaerica | exon |
| TCONS_00017660-exon-sc0000273-1491911889:17600..17670 | TCONS_00017660-exon-sc0000273-1491911889:17600..17670 | Clytia hemisphaerica | exon |
| TCONS_00017660-exon-sc0000273-1510915933:17600..17670 | TCONS_00017660-exon-sc0000273-1510915933:17600..17670 | Clytia hemisphaerica | exon |
| TCONS_00017660-exon-sc0000273-1575043694:17600..17670 | TCONS_00017660-exon-sc0000273-1575043694:17600..17670 | Clytia hemisphaerica | exon |
| TCONS_00017660-exon-sc0000273-1491911889:18875..19907 | TCONS_00017660-exon-sc0000273-1491911889:18875..19907 | Clytia hemisphaerica | exon |
| TCONS_00017660-exon-sc0000273-1510915933:18875..19907 | TCONS_00017660-exon-sc0000273-1510915933:18875..19907 | Clytia hemisphaerica | exon |
| TCONS_00017660-exon-sc0000273-1575043694:18875..19907 | TCONS_00017660-exon-sc0000273-1575043694:18875..19907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273 | supercontig | sc0000273:17279..19907 + |
Blast
The following BLAST results are available for this feature:
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