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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017685 ID=TCONS_00017685|Name=TCONS_00017685|organism=Clytia hemisphaerica|type=transcript|length=2359bpRun BLAST on NCBI transcript from alignment at sc0000273:104627..123860- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017685 ID=TCONS_00017685|Name=TCONS_00017685|organism=Clytia hemisphaerica|type=transcript|length=19234bp|location=Sequence derived from alignment at sc0000273:104627..123860- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017685 vs. Swiss-Prot (Human)
Match: S6A18 (Sodium-dependent neutral amino acid transporter B(0)AT3 OS=Homo sapiens GN=SLC6A18 PE=2 SV=2) HSP 1 Score: 389.808 bits (1000), Expect = 3.406e-124 Identity = 201/525 (38.29%), Postives = 323/525 (61.52%), Query Frame = 2
Query: 203 RARWTNQREYLLSCIGFAVGLGNVWRFPWIVLRNGGGAFLIPYFTMLIIEGVPLLYLEISLGQIFQVGAAPLWIKLSRWSRGLGIASIVAGFLSSTFYRIVTGWVFYYFAVSFQNPLPWSYCPKDSNGTSTTQNKCEQLGSTEYYWYYETLQITDDFNNPGTFSWQLFLCLTASYVIVFFCVIKRIQSAGKVVYFTVIFPYLVLLILFVQGFMLEGYSEGLKLLFTPKWHRLTDLRVWKDAATQIFYSIGVGYGGMLAFSSYNQQKESIMKNTMIIAVVNSVTSLFGSIAMFSILGYRATKKSQRCFNEH---------------SKNP-------INGTKPLSID------CSVNHFIENTGGGTGLAFIAFTEAIDLLPASNFFAIMFFLMLITLALDSLFGGLESIMTSIMDFKIFPNVKYVWKLI---IYMSISYVASSVNCLGTGDYMVQLFNDFGIDLIILFVTFSQLVVVCYIYGFKRFSLKQKTVTGQDIPLFFQICWRFVSPIV--IFVMIIMTLY 1678
R +W N+ +YLLSC GFAVGLGN+WRFP++ GGGAFLIPY L+ EG+P+ ++E+++GQ + G+ +W +S + G+G+ + FL S +Y + WV +Y SFQ+PLPWS CP D N T + +C+ + Y+WY +TL IT D N+ G+ W L +CL AS+ +V+ CVI+ I++ GKV+YFT +FPYLVL I ++G L G ++GL LFTP H L + RVW DAATQIF+S+ + +GG +AF+SYN + K+ ++IA+VN +TSL+ SIA+FS+LG++AT + C + + S++ +N T P + C + F++ + G GLAF+ FTE +P + +A++FF ML TL L ++FG +E+++T ++D + P ++V K + + +++++ L +G+Y +++F++F +L + F ++V V Y+YG KRF +TG+ ++++ WR VSP++ IFV I+ L+
Sbjct: 18 RPKWDNKAQYLLSCTGFAVGLGNIWRFPYLCQTYGGGAFLIPYVIALVFEGIPIFHVELAIGQRLRKGSVGVWTAISPYLSGVGLGCVTLSFLISLYYNTIVAWVLWYLLNSFQHPLPWSSCPPDLNRTGFVE-ECQGSSAVSYFWYRQTLNITADINDSGSIQWWLLICLAASWAVVYMCVIRGIETTGKVIYFTALFPYLVLTIFLIRGLTLPGATKGLIYLFTPNMHILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNSPRNDCQKDAVVIALVNRMTSLYASIAVFSVLGFKATNDYEHCLDRNILSLINDFDFPEQSISRDDYPAVLMHLNATWPKRVAQLPLKACLLEDFLDKSASGPGLAFVVFTETDLHMPGAPVWAMLFFGMLFTLGLSTMFGTVEAVITPLLDVGVLP--RWVPKEALTGLVCLVCFLSATCFTLQSGNYWLEIFDNFAASPNLLMLAFLEVVGVVYVYGMKRFCDDIAWMTGRRPSPYWRLTWRVVSPLLLTIFVAYIILLF 539 The following BLAST results are available for this feature:
BLAST of TCONS_00017685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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