TCONS_00017773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017773
Unique NameTCONS_00017773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017773 ID=TCONS_00017773|Name=TCONS_00017773|organism=Clytia hemisphaerica|type=transcript|length=817bp
tgcGCGCGCAGCGCGTATCTCGTTTGGTAAAATGTGCGCGCGATATACTA
AATTGCCCTATATggctaaacttttttgtttcgtgCATTGCTACATGACT
CTCGTGTTTCCTCAGATCGCTCCGTTTTCGCACTAAATCCTCATATTGCA
GCAAGAGAACTTCtatgattggtttgttttcccCGTTTTCCCGCGCGTTT
ATTCATTTGAACCGGTTGCTATTGCCTACCTACAAAAAACTTTCTCTTCT
TGCCAGCATAGTCCTTCTTCTGTTGGTTCAAGAACAAAGAGAGTTGTCTA
CACCTTCTACATGATGATTAAACTGCTGTCAGGCTGTTGCCAAACTATAG
TATATCCTAGGGAAGTACCACCTTCGTACAACAACTGTTGCTCCTGCACA
ATCTTTCTTTCAGTCTTTGGTTTTtgtgagttgaattggatcatgatttt
tgtgtgattgtcaCAACACAAGAAATGGTTTTaatgatgatgaagttttc
ttattattccttttgtcgtgaactattaacttttcctttgcatgcgtttt
aaatggggaaaacttttgtcgtgaactattaactttttctttgcatgcgt
ttaaaatggggtcactttggTCGTGAACTATCAACTTTTCCGTTGTATGC
ATTtgaaattgggaaaacttttaccgtgaactatgaaattttcctttaaa
tGCGTTTAAAACGGGGAAAACTttggtcgtgaactattaacttttccttc
gcatgcatttaaaatggggaaaacttttaccgtgaactattaacttttcc
ttcagaTGCGTTTAAAA
Run BLAST on NCBI

transcript from alignment at sc0000274:283743..284559

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017773 ID=TCONS_00017773|Name=TCONS_00017773|organism=Clytia hemisphaerica|type=transcript|length=817bp|location=Sequence derived from alignment at sc0000274:283743..284559 (Clytia hemisphaerica)
TTTTAAACGCAtctgaaggaaaagttaatagttcacggtaaaagttttcc
ccattttaaatgcatgcgaaggaaaagttaatagttcacgaccaaAGTTT
TCCCCGTTTTAAACGCatttaaaggaaaatttcatagttcacggtaaaag
ttttcccaatttcaAATGCATACAACGGAAAAGTTGATAGTTCACGAcca
aagtgaccccattttaaacgcatgcaaagaaaaagttaatagttcacgac
aaaagttttccccatttaaaacgcatgcaaaggaaaagttaatagttcac
gacaaaaggaataataagaaaacttcatcatcattAAAACCATTTCTTGT
GTTGtgacaatcacacaaaaatcatgatccaattcaactcacaAAAACCA
AAGACTGAAAGAAAGATTGTGCAGGAGCAACAGTTGTTGTACGAAGGTGG
TACTTCCCTAGGATATACTATAGTTTGGCAACAGCCTGACAGCAGTTTAA
TCATCATGTAGAAGGTGTAGACAACTCTCTTTGTTCTTGAACCAACAGAA
GAAGGACTATGCTGGCAAGAAGAGAAAGTTTTTTGTAGGTAGGCAATAGC
AACCGGTTCAAATGAATAAACGCGCGGGAAAACGgggaaaacaaaccaat
cataGAAGTTCTCTTGCTGCAATATGAGGATTTAGTGCGAAAACGGAGCG
ATCTGAGGAAACACGAGAGTCATGTAGCAATGcacgaaacaaaaaagttt
agccATATAGGGCAATTTAGTATATCGCGCGCACATTTTACCAAACGAGA
TACGCGCTGCGCGCgca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009962XLOC_009962Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017773-exon-sc0000274-1491911889:283743..284559TCONS_00017773-exon-sc0000274-1491911889:283743..284559Clytia hemisphaericaexon
TCONS_00017773-exon-sc0000274-1510915933:283743..284559TCONS_00017773-exon-sc0000274-1510915933:283743..284559Clytia hemisphaericaexon
TCONS_00017773-exon-sc0000274-1575043694:283743..284559TCONS_00017773-exon-sc0000274-1575043694:283743..284559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000274supercontigsc0000274:283743..284559 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.32407	1.87776	2.97309	2.38574	4.0919	2.30074	2.32562	2.73908	1.5735	1.82721	1.53707	1.59333	1.6867	1.93451	1.52416	1.52899	1.0513	1.15785	3.10145	3.05072	2.18267	1.89878	1.09593	1.58148	1.06504	2.8499	2.64038	2.16755	1.64911	3.03535
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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