TCONS_00017781 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017781
Unique NameTCONS_00017781
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017781 ID=TCONS_00017781|Name=TCONS_00017781|organism=Clytia hemisphaerica|type=transcript|length=5416bp
CAAAACGATGGAGGGTTGACAGCTTTGATGGCAGCTTCAGATCATGGTCA
CAATGAATGTGTCAAAGATTTGTTGAGATGGGGCGCACTGTGGAGACTTA
AGGAGCTAAAAGGGTTGACACCACTGTCAAGGATCACCCGGTTAAGAAAC
ATCGCATTCAAGGACACGACACCAATACAAACCTCCGATATCAAAGCCGA
CCCATCAAAATCCGCTCGATCTGTGGACGTCTTCCATATTTTCTCACTGA
AAGACTGCATAGTTTACAACACAAAATACCTTGCCAAAATACAACTACGT
CCAAGCTATAACAACAATCGTGTGTCCAAAAAAGAGGATgatgatttttt
agaaaaagaataTCGTATGCTCAGATCTTTGGTCCATCCACATATCATCA
TGTCACACTTTATATCCATCAGTTCTGAGCGAAAATTCAATATCTTAATC
ACTGAACCAATGAGCTACGGCAATTTATATCACGTGTTATACGATAAGAA
GAAATCATTACAAACAAAACTGGTAAAAATGGCTACAGATggaatcttaa
aagctttagtTTACTTAACAACTAAAAGCATTATTCATAATTTCATTAAC
TCGTCTAGCGTGTATTTCACGAGAGGCTGGGTAGCTAAGCTAGGGAATTT
CGAGCATGCGCTCTTAGATGGTGAAAATCCAAAGAGAGCGATGTCATCGG
CAGCAGAGAAGTATCATTTTCCGTACATGGCACCTGAACTACATTTATAT
GATGACTCTCTACCAAGCTCTGCTTCTGATGTGTATAGCTTTGGATGTTT
AGTTTGGGAAATGTACGGCCTACGTCGCCCATGGTCGTGGTTGGAACGTA
CTGAAATTGTATGTTTAGCGCAAGTCAAACACCCTATCACACTACCCATG
TCAACATGCTGGCCAGAGTCTATCAAAACCATCATCGAAATTGCCACCAA
ACAACGGCCCTTTCAACGGCCCACATTTCGGACACTTTACAGTGACGTAT
TCAGGCCGTTGATCGAGTCTGAGAACGGTGCTATTTTGAAGAGTTGTAAT
GCCGATGATTCGTCACaaatagaatttgaaaaattggaaggatcTTATAT
ATCAGAATCAGGTAGACGAAGACATGGAGTCATTGACCCAACATCTCGGT
CTGTTGCTATGTTGCAGCGAGCGAATCCGTCAGGTATAAAGACGCATTGC
CAAAGTCACTGTCTGTGTGCAAGTCACCAAGCGAATGTACCAGCTATTCG
AGTTTTAGATTCAGCAACTTTCTCTAGTGAACATGTGGTAAATATAGTAA
ATGTAGATTCGGTCGAAGAGACAACAACCTTTCAAGAAGCTGCATTTCAA
CGTAAATCAACGATCAAACCTAAGCGAAACCAGTCAGCAGCTCGTAAAGA
AATCTTCTCAGTTGATCCTAAACCAATCGCACAACGTACAAGTATTAAAC
CACCGGCACGTGATCAACTTTTCACACCTGAATCACATATATCAAGtaaa
tcaaaagaaatgatGGCTCTAGAACCTGATCTCAACTCAAAGCGTAAATC
AATTAACACAAACAGACAAGATGAGCCTATAAAAAGCTCCACCAGAAAAT
CAATAAGGCCTGTAGTACACGATGAAACCTTTGAACTAGACGCTAGACAA
ACCCGAAAATCAATAATGCCTGCGTTAAACGAAGAAATCTTTGAACCCGA
GGCCAGACAGACACCACAGCGAAGATCAATAAGACCTTTGGCACACGAAG
AAACCTTTGAACAGGACGCTGCTAGACAGACGCCAACCCGAAAATCAATA
AGGCCTCCTACACATGACGAAACCTTTGAGCCAGAGGCCAGACAGACACC
ACAGCGAAGATCAATAAGACCTTTGGCACACGAAGAAACCTTTGAACAGG
ACACTGCTAGACTGACGCCAACCCGAAAATCAATAAGGCCTCCTACACAT
GACGAAACCTTTGAGCCAGAGGCCAGACAGACACCACAGCGAAGATCAAT
AAGACCTTTGGCACACGAAGAAACCTTTGAACCGGACACTGATAGACAGA
CGCCAACCCGAAACTCAATAAGGCCTCCGGTACATGACGAATCCTTTGAG
CCAGAGGCCAGACAGACATCACATCGAAGATCAATAAGACCTCCTACACA
CGAAGAAACCTTTGAACCGGACACTGATAGACAGACGCCAACCCGAAACT
CAATAAGGCCTCCGGTACATGACGAATCCTTTGAGCCAGAGGCCAGACAG
ACATCACATCGAAGATCAATAAGACCTCCTACACACGTAGAAACCTTTGA
ACCGGACACTGATAGACTGACGCCAAACCGAAGATCAATAAGACCTCATA
CACACGAAGAAACCTTTGAACCGGACACTGCTAGACAGACGCCAACCCGA
AACTCAATAAGGCCTCCGGTACATGACGAATCCTTTGAGCCAGAGGCCAG
ACAGACATCACACCGAAGATCAATAAGACCTCCTACACACGTAGAAACCT
TTGAACCGGACACTGATAGACTGACGCCAAACCGAAAATCAATAAGGCCT
TCTATACATGCCGAATCCTTTGAACCCGAGGCCAGACAGACACCACAGCG
AAGATCAATAAGACCTCCTACACACGAAGAAACCTTTGAACTGGACACTG
CTAGACAGACGCCAACCCGAAACTCAATAAGGCCTCCGGTACATGACGAA
TCCTTTGAGCCAGAGGCCAGACAGACATCACACCGAAGATCAATAAGACC
TCCTACACACGAAGAAACCTTTGAACTGGACACTGATAGACTGACGCCAA
ACCGAAAATCAATAAGGCCTTCTATACATGCCGAATCCTTTGAACCCGAG
GTCAGGCAGACATCACACCGAAGATCAATAAGACCTCCTACACATGACGA
AACCTTTGAGCCCGAGGGCAGACAAACACCACAGCGAAGATTAATAAGAC
CTCCGGCACACGAAGAAGCCTTTGAACCGGACGCTGCTAGACAGACGCCG
AACCGGAAACCAACAAGGCCTCCTACACATGACGAAACCTTTGAGCCAGA
GGTCAGACAGACACCACAGCGAAGATCAATAAGACCTCCGGCACACGAAG
AAACCTTGGTGTCAAACGCTAAACAAGAGCCACACCGGAAGTCAATAAGA
CCTCCGACACACGAGGAAACTTTTGAACAAGAAGCTGTACAAACGCCACA
CCGAAAGTCGGCAAGGCCTCCTGCTCAAGAAGAAACTTTTGAACCAGAGC
GAATTATAATGGATAAAAGGAGAAGCATAAGGCCCTCAGCACACGAAGAA
ACACTAGATGAACCTAAACACAGACAACGCCAAGCCTCTATAAAACCTCA
AGTACACGAAGAAACATTTGCACCAAATCCTTACCATAAGCAACATCGAA
ATTCAATAAAGCCTCCAACACACGATGGAAATATCAACCCCGAACCAAGA
ATAGTTGAACAACGCGCAACTACGGTAGCCGAGTATGATCCGCCTCGACA
ACCTCAAGAATCGATCTATAGTCAACATGAATTtgaatcaaataaaaaac
aacatgaCCACAATGAAAAGCATTTTTCACCAAAAGCAGACAATAGACAC
CAAATGAATCATCACCATTATCCAGAAGAGCCAATCGACACTAGACAACA
GTACAATGAAAATTACCCAATGAACAATACAAGGGTGTACACAGAAAACT
CAAAACAAGTTAAATCGTCGGAAACCTCACGGCAAGATTACCGAGAGCCG
AATGACAATTATACTGACAAAAACTACGACATCAATACTACACATACCCA
AAGAAATACACACCCAGATAAACATCAAAGATCAGAAGTCATTCAGGAGA
ATTTGTATCGACAGGCACAAAACAATACAAAACATGTGACTAATGAAGCC
CACCGCATGAATAATTTGTCTACGAGAGGCTACTCAgagaaatcaaatca
aaaacaatcCGTTAAGCATTCAGGTCAAACGCCTGAAGTGATTTATAATG
AAATCACAGAGGAAAATGTACAATCTGGTCAGAAACATCAACCTAAAGCA
GCTTACAAATTACCACCCCGCCAATTAGATATCGTTCAGTACATTGAAAA
TCTACACAAAAGTGATTTATCTACAAAAGCTAATAAGGAAAGCCTCTATC
AAACAAGAGAGGATATATACCAAAAAAGGGAAGATATATACCAAAAAAGG
GAAGATATATACCAAAAAAGGGAACATATATACCAAAAAAGGGAAAGTCC
ATACCAAAAAAGGGATAGTGTGAACCAAGATAAACAGATCACAGGTTTTT
CTAAAAACATCCACAAAGATAGTAATactgaagaaaaaacaaacgtTAAA
AACAACATAAACCAAAAACAACTTATTCTAAATACCAAACCGAGTGACGG
CCAAGAACAAGTAACTGGAACAGGTGGAAAATCGAAAGACAACAAAAACA
ACTCAACAAAACccaaacaaaacaataaaaacaataaggacagtaaaaaa
tcaaaatttcctttCAAAGCTTTCTCAAGGAGACGAAAAAGCGAATCGTC
AGAAAGTGACGAAGTGTATGATGAGCCTTATGAAATTGTCGATGGTCGAA
GACCAATCACAATTTATAATAACTTTACAATCCAAAACCAACCCGATATT
GTAGAAAAAGTACAAACCACCGGTTTTCTGAATACTCCAACTTCAAAGGA
AATCCGAAAAATATCTTCTCCTGTCTCAAAGGAAAACCAAGAACTTTTTT
CTTCTACCACAAAGGAAACCAATGTTCCCACTAGTCTCGTCTCAAAGGAA
GCCCCTGTTCCTACTACTCTTGTATCAAAGGAAACCCATGTTCCAACTAC
TCTTGTATCAAGGGAAACCGATGATCATCATATCCCTACTACAAAAGAAA
TCCATTGTACTTTTTCTGACTTGGGGATAAACCATTATGAGGAGGTGAAC
ACCGATCCATCAAATTTCTTGAGAATCAAAAAGCAGAACAATAAGACAGT
GCAGTATCCAAGTCCACTAGCAGAATGGAGTCCCGCAAGTTCAATTGATG
TTTTTCGAGAAGATTTTGTATCGAAAGGCTCATTCGTAAAAGACTTTTTA
GGAAAGATGAAAAACGACGCTCCATCGTCatttgagaaaattgaaaacaa
acttggttcattttttgagaaagaagacaGTGTTTACGAACTAGTTTCCA
ATCCCGTTGTCATGAGCGACAAGATGGAAAAAGATGCACAGGTACAAGAG
ATCTTTCAAATGGCGGGAAATCACGAACGGAAGAATTGGGCCAAGCTGGA
GACAACGAATCGTGGAAGAAGGAATACAAAACGAATGTATTGTGGAGACC
ATTTAATAGAGTTTGGGAATGACAATTCTGTCTCTGTTAGAGGAGGACGT
AGTCTAATGAGAAAGC
Run BLAST on NCBI

transcript from alignment at sc0000276:88280..103150+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017781 ID=TCONS_00017781|Name=TCONS_00017781|organism=Clytia hemisphaerica|type=transcript|length=14871bp|location=Sequence derived from alignment at sc0000276:88280..103150+ (Clytia hemisphaerica)
CAAAACGATGGAGGGTTGACAGCTTTGATGGCAGCTTCAGATCATGGTCA
CAATGAATGTGTCAAAGATTTGTTGAGATGGGGCGCACTGTGGAGACTTA
AGGAGCTAGTAAGTATAAATGATTTAACATTAACTTCCTATTCCATTGTT
TAAAATGTATGTTAGCATTGTGAAAGTAGGGTATTAGCGCTCAGAACAAA
TGGGGTTGGTTTACTTTTTATTGGAGAATTTTTAAAACTGCATcttaagc
ttttcaaaaatattcattatttCTCCTTATGGATACAATGTCTTTTAAaa
ccatatttttttcttctaatcATTTAGAAAGGGTTGACACCACTGTCAAG
GATCACCCGGTTAAGAAACATCGCATTCAAGGACACGACACCAATACAAA
CCTCCGATATCAAAGCCGACCCATCAAAATCCGCTCGATCTGTGGACGTC
TTCCATATTTTCTCACTGAAAGACTGCATAGTTTACAACACAAAATACCT
TGCCAAAATACAACTACGTCCAAGCTATAACAACAATCGTGTGTCCAAAA
AAGAGGATgatgattttttagaaaaagaataTCGTATGCTCAGGTAGGAC
CTTCTCTAAGAGCTGTTtcaaaacccaaaaataaggtaaatattggctaa
aatcaggctttttagaGCAGTGGGATCCTAATAAGGTCTGGGGGGGGGGA
gttagaaaaattttgaaaaattaacaatcGGGGAGGCCCGTTTATTTAAA
ACCTAAGAGTAGTTGACTCTTATGTATTTTTTGAGGACGGGGGTGTCTGA
AACGATTTAGAACAGCGCATAAGATGCTGACCTCAGTCAGTCGTCCTTAT
CTAGATAGATCAAAAACTTACCATCCCTACTGCAAAAACGCACTATACAT
AAAGGAGCTACGATGATATACAGGGAGCTAGATAAGTCATTGTTTGACGC
CAATGTACACTTTTTTCACTTCTCAGAAACAAAGATTCATACAGTTGGCG
CTcgctaattcgattttcaaaggggttgaatttttatcgaataagggagt
gtattgaatagtagagcgtcgtttataaaAGCTTCTCGTTGACGGTGACT
ATCGATACTAGATCGAATAATTAatagaacgtcgaataagagagcgtcat
ctgtagttgaaaaatgacaaaagacaaaaaatatttctctttaaatactt
taatgacataaattttctcgggattaaattttgcggtNCTGTCTTTAAAT
ACTTTAATGACATAAATTTTCttgggattaaattttgcggttgagctcat
tcgcgaaattttaagatttcgcggatggcattatcgggagacaatatttt
catgattttgtgtctttgaaatttcaaaaatagcaATTTGACATTTTTGC
ATCTTGCTGAAAATAATTTGGCTGATAagacctttccaaatttccattgg
gacttacgcaatttcgcggatgacatcCAAACCCGCGAAATCCGATttaa
tttaatccccgcgaaaatttataccATAAAAGTACAGAATCAAAATTTAG
TAACAGTGATATGTGATTTGTGCACGCATCATTGATTTTATTTCTCTTTT
AGATCTTTGGTCCATCCACATATCATCATGTCACACTTTATATCCATCAG
TTCTGAGCGAAAATTCAATATCTTAATCACTGAACCAATGAGCTACGGCA
ATTTATATCACGTGTTATACGATAAGAAGAAATCATTACAAACAAAACTG
GTAAAAATGGCTACAGATggaatcttaaaagctttagtTTACTTAACAAC
TAAAAGCATTATTCATAATTTCATTAACTCGTCTAGCGTGTATTTCACGA
GAGGCTGGGTAGCTAAGCTAGGGAATTTCGAGCATGCGCTCTTAGATGGT
GAAAATCCAAAGAGAGCGATGTCATCGGCAGCAGAGAAGTATCATTTTCC
GTACATGGCACCTGAACTACATTTATATGATGACTCTCTACCAAGCTCTG
CTTCTGATGTGTATAGGTAAGCTTGCTATGAGCAATAGAAATCTAAACAT
ATGTTTTGTCTTAGCTCAAATACCTTATGCTTTAAAAAGGGGTGTAGACT
AGCCTTGTGCATCCGTGCTTGTCAATTTTCGGTGTTTTCGTATAAAAGGT
AACTTCACGAATATCATGGATTTACGTAACTGATGGGCCATTAGTAAGCA
TGTCATACCCATtaacttccaagcccgaagggctagactcgagactcatg
gatgggaaatgaagccacttactttccatccagaacgcctgcgcatggtt
tttacacaaattccggactgaaagtaaaatctatcgcaagatttcaaaaa
atgcagtcctcaaaaacaaaagaaccactagatacaatccgtcgtcatga
ttgcagCCAGCGCGTTCTAGTCGCGTTCTGAATggaaaataagtggtttc
actttttcttgcctgagaaaggtaaGGGATTCTACTCTAGCGNCAagtgg
tttcactttttcttgcctgagaaaggtaagggattctactctagcccttc
gtgCTTTAAACTGAATGGTCATATCGCACCCAGTCCCTTAGTCCGTTATT
TCATTGTTCTGATATGGCTCACGCTCATCAGTAAAATTGAAAAGCGGTAC
AAGTGGCTCTTGGTGCGAGATTATTCAAAAGGATATTTAATACATATTCT
TGTCAATCTTTTCTAGCTTTGGATGTTTAGTTTGGGAAATGTACGGCCTA
CGTCGCCCATGGTCGTGGTTGGAACGTACTGAAATCGTATGTTTAGCGCA
AGTCAAACACCCTATCACACTACCCATGTCAACATGCTGGCCAGAGTCTA
TCAAAACCATCATCAAAATTGCCACCAAACAACGGCCCTTTCAACGGCCT
ACATTTCAGACACTTTACAGTGACGTATTCAGGCCGTTGATCGAGTCTGA
GAACGGTGCTATTTTGAAGAGTTGTAATGCCGATGATTCGTCACAAATAN
TTCATAATTTCATTAACTCGTCTAGCGTGTATTTCACGAGAGGCTGGGTA
GCTAAGCTAGGGAATTTCGAGCATGCGCTCTTAGATGGTGAGAATCCAAA
GAGAGCGATGTCATCGGCATCAGAGAAGTATCATTTTCCGTACATGGCAC
CTGAACTACATTTATATGATGACTCTCTACCAAGCTCTGCTTCTGATGTG
TATAGGTAAGCTTGCTATGAGCAATAGAAATCTAAACATATGTTTTGTCT
TAGCTCAAATACCTTATGCTTTAAANAGCTCTGCTTCTGATGTGTATAGG
TAAGCTTGCTATGAGCAATAGAAATCTAAACATATGTTTTGTCTTAGCTC
AAATACCTTATGCTTTAAAAAGGGGTGTAGACTAGCCTTGTGCATCCGTG
CTTGTCAATTTTCGGTGTTTTCGTATAAAAGGTAACTTCACGAATATCAT
ggatttacgttactgatgggCTATTAGTAAGCATGTCATATCCATTAACT
TCcgagcccgaagggctagactcgagactcatggatgggaaatgaagcca
cttatttcccatccagaacgcctgcgcgtggtttttacacaaattccgga
ctgaaagtaaaatctatcgcaagatttcaaaaaatgcagtcctcaaaaac
aaaagaaccactagatacaatccgtcgtcatgattgcagCCAGCGCGTTC
TAGTCGCGTTCTGAATggaaaataagtggtttcactttttcttgcctgag
aaaggtaaGGGATTCTACTCTAGCGCTTCGTGCTTTAAACTGAATGGTCA
TATCGCACCCAGTCCTTTAGTCCGTTATTTCATTGTTCTGATATGGCTCA
CGCTCATCAGTAAAATTGAAAAGCGGTACAAGTGGTTCTTGGCACGACAT
TATTCAAAAGGATATTTAATACATATTCTTGTCAATCTTTTCTAGCTTTG
GATGTTTAGTTTGGGAAATGTACGGCCTACGTCGCCCATGGTCGTGGTTG
GAACGTACTGAAATTGTATGTTTAGCGCAAGTCAAACACCCTATCACACT
ACCCATGTCAACATGCTGGCCAGAGTCTATCAAAACCATCATCGAAATTG
CCACCAAACAACGGCCCTTTCAACGGCCCACATTTCGGACACTTTACAGT
GACGTATTCAGGCCGTTGATCGAGTCTGAGAACGGTGCTATTTTGAAGAG
TTGTAATGCCGATGATTCGTCACaaatagaatttgaaaaattggaaggat
cTTATATATCAGAATCAGGTAGACGAAGACATGGAGTCATTGACCCAACA
TCTCGGTCTGTTGCTATGTTGCAGCGAGCGAATCCGTCAGGTATAAAGAC
GCATTGCCAAAGTCACTGTCTGTGTGCAAGTCACCAAGCGAATGTACCAG
CTATTCGAGTTTTAGATTCAGCAACTTTCTCTAGTGAACATGTGGTAAAT
ATAGTAAATGTAGATTCGGTCGAAGAGGTAAGTAATAtaccaaaaaataa
tttaattgtTTTTCCTCGTAACGAAATTTGACTATGAAGGAGTTTTACAA
ATCTTTTAATTGTGTTTGACCCTTATGAGATCGCATGTTGAAAGTTATGA
gagaaaaaataacataatGAATTGATATATAATCGAGTATTTACTGCTAA
AAAGATGCGATTACAGTTTCTAGTTCCACGATGGACCTTAGAATGGTAGA
AATAGAAGTGTTTTAGGTCTATAGCCACACTAGAAACCATCAATCCCGTG
TTTTCAACTTCTCAATGATGATCAGTACCTTNTCTATAGCCACACTAGAA
ACCATCAATCCCGTGTTTTCAAATTCTCAATGATAATCAGTACCAACTTG
GCATCTTTGCTtcaaatagatcttatcggagtttttgatttttctaaaac
agcgatgcattgtggaattgtttcaggggtattacaatagaattccctcg
aggaattcctaagaaatttctattgtaatacccccaaaacaatcccacaa
tgcatcacttttttagaaaaatcaaaaacttcgaTAATAAGATCTATTCT
TTTAACATATAATAATcttgatgtatcatttttttaGACAACAACCTTTC
AAGAAGCTGCATTTCAACGTAAATCAACGATCAAACCTAAGCGAAACCAG
TCAGCAGCTCGTAAAGAAATCTTCTCAGTTGATCCTAAACCAATCGCACA
ACGTACAAGTATTAAACCACCGGCACGTGATCAACTTTTCACACCTGAAT
CACATATATCAAGtaaatcaaaagaaatgatGGCTCTAGAACCTGATCTC
AACTCAAAGCGTAAATCAATTAACACAAACAGACAAGATGAGCCTATAAA
AAGCTCCACCAGAAAATCAATAAGGCCTGTAGTACACGATGAAACCTTTG
AACTAGACGCTAGACAAACCCGAAAATCAATAATGCCTGCGTTAAACGAA
GAAATCTTTGAACCCGAGGCCAGACAGACACCACAGCGAAGATCAATAAG
ACCTTTGGCACACGAAGAAACCTTTGAACAGGACGCTGCTAGACAGACGC
CAACCCGAAAATCAATAAGGCCTCCTACACATGACGAAACCTTTGAGCCA
GAGGCCAGACAGACACCACAGCGAAGATCAATAAGACCTTTGGCACACGA
AGAAACCTTTGAACAGGACACTGCTAGACTGACGCCAACCCGAAAATCAA
TAAGGCCTCCTACACATGACGAAACCTTTGAGCCAGAGGCCAGACAGACA
CCACAGCGAAGATCAATAAGACCTTTGGCACACGAAGAAACCTTTGAACC
GGACACTGATAGACAGACGCCAACCCGAAACTCAATAAGGCCTCCGGTAC
ATGACGAATCCTTTGAGCCAGAGGCCAGACAGACATCACATCGAAGATCA
ATAAGACCTCCTACACACGAAGAAACCTTTGAACCGGACACTGATAGACA
GACGCCAACCCGAAACTCAATAAGGCCTCCGGTACATGACGAATCCTTTG
AGCCAGAGGCCAGACAGACATCACATCGAAGATCAATAAGACCTCCTACA
CACGTAGAAACCTTTGAACCGGACACTGATAGACTGACGCCAAACCGAAG
ATCAATAAGACCTCATACACACGAAGAAACCTTTGAACCGGACACTGCTA
GACAGACGCCAACCCGAAACTCAATAAGGCCTCCGGTACATGACGAATCC
TTTGAGCCAGAGGCCAGACAGACATCACACCGAAGATCAATAAGACCTCC
TACACACGTAGAAACCTTTGAACCGGACACTGATAGACTGACGCCAAACC
GAAAATCAATAAGGCCTTCTATACATGCCGAATCCTTTGAACCCGAGGCC
AGACAGACACCACAGCGAAGATCAATAAGACCTCCTACACACGAAGAAAC
CTTTGAACTGGACACTGCTAGACAGACGCCAACCCGAAACTCAATAAGGC
CTCCGGTACATGACGAATCCTTTGAGCCAGAGGCCAGACAGACATCACAC
CGAAGATCAATAAGACCTCCTACACACGAAGAAACCTTTGAACTGGACAC
TGATAGACTGACGCCAAACCGAAAATCAATAAGGCCTTCTATACATGCCG
AATCCTTTGAACCCGAGGTCAGGCAGACATCACACCGAAGATCAATAAGA
CCTCCTACACATGACGAAACCTTTGAGCCCGAGGGCAGACAAACACCACA
GCGAAGATTAATAAGACCTCCGGCACACGAAGAAGCCTTTGAACCGGACG
CTGCTAGACAGACGCCGAACCGGAAACCAACAAGGCCTCCTACACATGAC
GAAACCTTTGAGCCAGAGGTCAGACAGACACCACAGCGAAGATCAATAAG
ACCTCCGGCACACGAAGAAACCTTGGTGTCAAACGCTAAACAAGAGCCAC
ACCGGAAGTCAATAAGACCTCCGACACACGAGGAAACTTTTGAACAAGAA
GCTGTACAAACGCCACACCGAAAGTCGGCAAGGCCTCCTGCTCAAGAAGA
AACTTTTGAACCAGAGCGAATTATAATGGATAAAAGGAGAAGCATAAGGC
CCTCAGCACACGAAGAAACACTAGATGAACCTAAACACAGACAACGCCAA
GCCTCTATAAAACCTCAAGTACACGAAGAAACATTTGCACCAAATCCTTA
CCATAAGCAACATCGAAATTCAATAAAGCCTCCAACACACGATGGAAATA
TCAACCCCGAACCAAGAATAGTTGAACAACGCGCAACTACGGTAGCCGAG
TATGATCCGCCTCGACAACCTCAAGAATCGATCTATAGTCAACATGAATT
tgaatcaaataaaaaacaacatgaCCACAATGAAAAGCATTTTTCACCAA
AAGCAGACAATAGACACCAAATGAATCATCACCATTATCCAGAAGAGCCA
ATCGACACTAGACAACAGTACAATGAAAATTACCCAATGAACAATACAAG
GGTGTACACAGAAAACTCAAAACAAGTTAAATCGTCGGAAACCTCACGGC
AAGATTACCGAGAGCCGAATGACAATTATACTGACAAAAACTACGACATC
AATACTACACATACCCAAAGAAATACACACCCAGATAAACATCAAAGATC
AGAAGTCATTCAGGAGAATTTGTATCGACAGGCACAAAACAATACAAAAC
ATGTGACTAATGAAGCCCACCGCATGAATAATTTGTCTACGAGAGGCTAC
TCAgagaaatcaaatcaaaaacaatcCGTTAAGCATTCAGGTCAAACGCC
TGAAGTGATTTATAATGAAATCACAGAGGAAAATGTACAATCTGGTCAGA
AACATCAACCTAAAGCAGCTTACAAATTACCACCCCGCCAATTAGATATC
GTTCAGTACATTGAAAATCTACACAAAAGTGATTTATCTACAAAAGCTAA
TAAGGAAAGCCTCTATCAAACAAGAGAGGATATATACCAAAAAAGGGAAG
ATATATACCAAAAAAGGGAAGATATATACCAAAAAAGGGAACATATATAC
CAAAAAAGGGAAAGTCCATACCAAAAAAGGGATAGTGTGAACCAAGATAA
ACAGATCACAGGTTTTTCTAAAAACATCCACAAAGATAGTAATactgaag
aaaaaacaaacgtTAAAAACAACATAAACCAAAAACAACTTATTCTAAAT
ACCAAACCGAGTGACGGCCAAGAACAAGTAACTGGAACAGGTGGAAAATC
GAAAGACAACAAAAACAACTCAACAAAACccaaacaaaacaataaaaaca
ataaggacagtaaaaaatcaaaatttcctttCAAAGCTTTCTCAAGGAGA
CGAAAAAGCGAATCGTCAGAAAGTGACGAAGTGTATGATGAGCCTTATGA
AATTGTCGATGGTCGAAGACCAATCACAATTTATAATAACTTTACAATCC
AAAACCAACCCGATATTGTAGAAAAAGTACAAACCACCGGTTTTCTGAAT
ACTCCAACTTCAAAGGAAATCCGAAAAATATCTTCTCCTGTCTCAAAGGA
AAACCAAGAACTTTTTTCTTCTACCACAAAGGAAACCAATGTTCCCACTA
GTCTCGTCTCAAAGGAAGCCCCTGTTCCTACTACTCTTGTATCAAAGGAA
ACCCATGTTCCAACTACTCTTGTATCAAGGGAAACCGATGATCATCATAT
CCCTACTACAAAAGAAATCCATTGTACTTTTTCTGACTTGGGGATAAACC
ATTATGAGGAGGTGAACACCGATCCATCAAATTTCTTGAGAATCAAAAAG
CAGAACAATAAGACAGTGCAGTATCCAAGTCCACTAGCAGAATGGAGTCC
CGCAAGTTCAATTGATGTTTTTCGAGAAGATTTTGTATCGAAAGGCTCAT
TCGTAAAAGGTGAGCTTTTTATTCTCTTTATTCGTAGAAATGGGCCATTG
tttttttatatccatacagggggtggacgaagaTTTCCAATTAATTCGAG
CAGAATTTCCAGGTGGTCTAAAgagtgttttttatttttccagggggtta
aagACTGATTTTCGTTTGTCAACcatcactttaaggtatgaaaagaaatt
ttccataggtccttttgcaaattttgccactttccagggggtatccaaac
attttcaaacattttttttacttaCCTTGAGTTACCTTGAGCTTGTTTCG
TAATATCTTTTCGCATCCATCCTGTGAGGACcgatgtaaattttcatatt
gatgatGCTGTTTGTTTCAGCTCGTCTCATCATAGTGTAGCCAGTCACNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GCCATTTGAGTGTGTAACGGTCTGTTTGAAGTGTGATGAAATATCTTCTC
TCATGTATATAGCGACACCACCACTACTGTACATCTTCCAAATCGTGACT
TTGGTCTTTTTCTGTCGGACCGAAATATTTCATAGCCTTCTATGTGTAAC
TCAGCATCATTATGGTCTTTGAGCCAAGTTTCNNNNNNNNNNNNNNNNNN
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AACATTCTCCTTTCCTCAGTGAATCAATGCacatttttgggtgaaaaaag
aGACAGTTTCTACCTTTTTGACAGCCAACTCTGGCTCTGGTTCCGTGCTT
CATGAATTTTCGACATGCTTTTGGATGGTCAAACTTgcacttgaaaaggt
tcgtcccctgtatggaaatttaatggaatggcccaatagcCCATTGTTTT
TTAATATCAATCATCATGTTTTTCAGATTGTTTCATCCTTTTCGTTGTCG
GGAGGGTCTAGAATAGGCTAAGGGCTCTACACAATTCGATAAAAATTGAA
CTACCTTGAAGGGTTGCAAAGCATGTCCTTTTTAAGCAATGTCACTTGAA
TATCTATCATTGACGTCACATTGACCTTCCACGGCAACGACTTCCCCAAT
TCAATTGACCACTCTCCAACGCggattttgatcatgtgatgGGCAAAAAA
ACGTCAACCTCAAAATTCTAAACAAGCCGACTAGGGAGGTGTTCAAATGG
CATTGCTTTTAAGTGTCTTATGGATACAAGATACAAAGTTGGACGTCATC
AGTTCAAATAGAGTGAGGAAAAGGATGAGAAGggtagattttattttcaa
gtggAATGGCAAGAAACTCTCGAAAATAACACACTTTGCTTTTCTAGACT
TTTTAGGAAAGATGAAAAACGACGCTCCATCGTCatttgagaaaattgaa
aacaaacttggttcattttttgagaaagaagacaGTGTTTACGAACTAGT
TTCCAATCCCGTTGTCATGAGCGACAAGATGGAAAAAGATGCACAGGTAC
AAGAGATCTTTCAAATGGCGGGAAATCACGAACGGAAGAATTGGGCCAAG
CTGGAGACAACGAATCGTGGAAGAAGGAATACAAAACGAATGTATTGTGG
AGACCATTTAATAGAGTTTGGGAATGACAATTCTGTCTCTGTTAGAGGAG
GACGTAGTCTAATGAGAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009966XLOC_009966Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017781-exon-sc0000276-1491911889:88280..88387TCONS_00017781-exon-sc0000276-1491911889:88280..88387Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1510915933:88280..88387TCONS_00017781-exon-sc0000276-1510915933:88280..88387Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1575043694:88280..88387TCONS_00017781-exon-sc0000276-1575043694:88280..88387Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1491911889:88607..88872TCONS_00017781-exon-sc0000276-1491911889:88607..88872Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1510915933:88607..88872TCONS_00017781-exon-sc0000276-1510915933:88607..88872Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1575043694:88607..88872TCONS_00017781-exon-sc0000276-1575043694:88607..88872Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1491911889:89882..90295TCONS_00017781-exon-sc0000276-1491911889:89882..90295Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1510915933:89882..90295TCONS_00017781-exon-sc0000276-1510915933:89882..90295Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1575043694:89882..90295TCONS_00017781-exon-sc0000276-1575043694:89882..90295Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1491911889:92225..92756TCONS_00017781-exon-sc0000276-1491911889:92225..92756Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1510915933:92225..92756TCONS_00017781-exon-sc0000276-1510915933:92225..92756Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1575043694:92225..92756TCONS_00017781-exon-sc0000276-1575043694:92225..92756Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1491911889:93367..97138TCONS_00017781-exon-sc0000276-1491911889:93367..97138Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1510915933:93367..97138TCONS_00017781-exon-sc0000276-1510915933:93367..97138Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1575043694:93367..97138TCONS_00017781-exon-sc0000276-1575043694:93367..97138Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1491911889:102827..103150TCONS_00017781-exon-sc0000276-1491911889:102827..103150Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1510915933:102827..103150TCONS_00017781-exon-sc0000276-1510915933:102827..103150Clytia hemisphaericaexon
TCONS_00017781-exon-sc0000276-1575043694:102827..103150TCONS_00017781-exon-sc0000276-1575043694:102827..103150Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:88280..103150 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0216769	0	0	0.1047	0.236884	0.0567553	0.0914871	0.137798	0	0	0.0866857	0.013391	0	0.0541599	0	0	0.0458448	0.062877	0	0.0832089	0.0780775	0	0	0.10842	0.119784	0	0	0	0.013145
Blast
[Close]
BLAST of TCONS_00017781 vs. Swiss-Prot (Human)
Match: MUC1 (Mucin-1 OS=Homo sapiens GN=MUC1 PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 4.031e-35
Identity = 186/563 (33.04%), Postives = 212/563 (37.66%), Query Frame = 1 
Query: 1747 EETFEQDAARQTPTRKSIR---PPTHDETFEPEARQTPQRRSIRPLAHEETFEQDTARLTPTRKSIRPPTHDETFEPEARQTPQRRSIRPLAHEETFEPDTDRQTPTRNSIRPPVHDESFEPEARQTSHRRSIRPPTHEETFEPDTDRQTPTRNSIRPPVHDESFEPEARQTSHRRSIRPPTHVETFEPDTDRLTPNRRSIRPHTHEETFEPDTARQTPTRNSIRPPVHDESFEPEARQTSHRRSIRPPTHVETFEPDTDRLTPNRKSIRPSIHAESFEPEARQTPQRRSIRPPTHEETFELDTARQTPTRNSIRPPVHDESFEPEARQTSHRRSIRPPTHEETFELDTDRLTPNRKSIRPSIHAESFEPEVRQTSHRRSIRPPTHDETFEPEGRQTPQRRLIRPPAHEEAFEPDAARQTPNRKPTRPPTHDETFEPEVRQTPQRRSIRPPAHEETLVSNAKQEPHRKSIRPPTHEETFEQEAVQTPHRKSARPPAQEETFEPERIIMDKRRSIRPSAHEETLDEPKHRQRQASIKPQVHEETFAPNPYHKQHRNSIKPPTHD 3426
              T+ QD      TR ++    PP HD T  P+ +  P   S  P AH  T   DT    P   S  PP H  T  P+ R  P   S  P AH  T  PDT    P   S  PP H  +  P+ R      S  PP H  T  PDT    P   S  PP H  +  P+ R      S  PP H  T  PDT R  P   S  P  H  T  PDT R  P   S  PP H  +  P+ R      S  PP H  T  PDT    P   S  P  H  +  P+ R  P   S  PP H  T   DT R  P   S  PP H  +  P+ R      S  PP H  T   DT    P   S  P  H  +  P+ R      S  PP H  T  P+ R  P      PPAH     PD  R  P    T PP H  T  P+ R  P   S  PPAH  T   + +  P   S  PP H  T   +    P   S  PPA   T  P+        S  P AH  T   P  R    S  P  H  T AP+   +    S  PP H 
Sbjct:   91 AATWGQDVTSVPVTRPALGSTTPPAHDVTSAPDNKPAPG--STAPPAHGVTSAPDT---RPAPGSTAPPAHGVTSAPDTRPAPG--STAPPAHGVTSAPDTR---PAPGSTAPPAHGVTSAPDTRPA--PGSTAPPAHGVTSAPDTR---PAPGSTAPPAHGVTSAPDTRPA--PGSTAPPAHGVTSAPDT-RPAPG--STAPPAHGVTSAPDT-RPAP--GSTAPPAHGVTSAPDTRPA--PGSTAPPAHGVTSAPDTR---PAPGSTAPPAHGVTSAPDTRPAPG--STAPPAHGVTSAPDT-RPAP--GSTAPPAHGVTSAPDTRPA--PGSTAPPAHGVTSAPDTR---PAPGSTAPPAHGVTSAPDTRPA--PGSTAPPAHGVTSAPDTRPAPGS--TAPPAHGVTSAPD-TRPAPGS--TAPPAHGVTSAPDTRPAPG--STAPPAHGVTSAPDTRPAP--GSTAPPAHGVTSAPD--TRPAPGSTAPPAHGVTSAPD--TRPAPGSTAPPAHGVT-SAPDTRPAPGSTAPPAHGVTSAPD--TRPAPGSTAPPAHG 597
The following BLAST results are available for this feature:
BLAST of TCONS_00017781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MUC14.031e-3533.04Mucin-1 OS=Homo sapiens GN=MUC1 PE=1 SV=3[more]
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