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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017798 ID=TCONS_00017798|Name=TCONS_00017798|organism=Clytia hemisphaerica|type=transcript|length=3403bp
acgggatttgacgaaaaaaaagacgggaaaacggtattttaaaatcagac
agtGACGGTATTTGAccttatgccggtatttgaacctgtacaaaccggtg
tgacggtgttattatgcATTATTTTGATATACCGTGACCGAAAATGGATA
AACGGGATAAACAGCAAATCACTCTCCACAAAAAATccacttttataaaa
aaacatcataGCATtgattttgaataaaaaggaGTATGGAcatttttctt
ttgtgtttCTACGGTAATTGATCATTATGTCAAATTGCTCTTTTCTTATT
CATATGCAAATGAGCGTCATTCCATTGTTTCACAGTCCTATACACGAgag
aatttgattttaattgcAATGTCAAAGAGCGCAAGACAAGTAAATTTATT
TTAGCTCAAATACACGCTACAGGAGACAAGGAGCTTAGAGAAGGGCTTTT
GTATATTGgtgctatttttttgtttgtgtgTGGAAAGGACTCACATTTGA
CGACTCTTGTATAGAACAAGAATTCTAATTAACAGAGACACATCACTGAC
GCTGATAATCTATTTAATTCACATCGACTGCAAAATATTGAAGGAATTTG
AAGCAAAAGGATATCCACATAGAGTGAACATCGAGTTTCATTTGCAAGAA
TGGTTGTAACAAGCGATGAAAAACCTAGCGATGCTATTTCACCAAGTTTA
GCAAGTGCGGCAATGAGTTTCCCACCGCCACCACAATTTCAAGGACTACT
GCCACCTTCTGGGTTGAAAATTCCCCGATTTGGTGGAATGATGATGGACG
ATACAATGAAAATGAATCCATTCGGATTCTCGTTGCCTTTTACAACGATG
TCACATGTCCCGTATTTGAAACCGGTTTCCCCGAAACCAGAAGATCAATC
TGAAGATGATAAAGCTGGAAGTTCGGATGatgAATCAAAAGATGGTGATG
AtaaaaacgacaaaaacaacaacaagaagGGCGGAGCTGGAGGGCGGAAA
TCGCGCAAGCCAAGAACGATATACAGCAGCCATCAACTTCGTGAACTTAA
CCGACGATTCAGTAGAACACAATATTTAGCTTTACCAGAACGAGCTGAAC
TAGCAGctGAACTCAATCTCACACAAACACAAATCAAAATCTGGTTTCAA
AACAAACGATCCAAACTGAAGAAGATCGTCAAAAGTGGAGGCGTCCCACC
TATTAGTCCAACTATACAATCAGTATACAACGGTGAAACGCGGGTCCCTG
TCACTCAATGGGAGAACTCACTAAAGGCTGCGTCCGCACTGGCAGCTAGT
CATCTAACCCCTCCATCACCTTCAGCAATCACCTTTTCATCGTCTGCACC
CACCTACTCGCATACTCCGGCCTCTTCAGTACACGCAATCCCGACTACTG
CATCCAGCTTCTTCCAGTCTGCAGTCCAATCATCAATGTATGCAAACATG
TGGTATAATCCTCCCCCAGTTCCCCCACCAACAGGAGGAGACCTAACAAA
TGCAGATAGCTCCCCGGAAGCAGCACTTCCGACTACCTCAACGACATCAT
CTTTTCCAATGTTTCCAAACATGGACTTACTAAGTCAAGCAGCTCAATCT
ATGTATAATCAATCACAATCATGCATTTAAACcttttttctagatttttt
aatgaaatttttcattttctttttcaaaattttctcataCGTTTGAACTA
AAAATTATTACTCATACCGCTTTGTAGAGAATTGGAGCTTTGAAACGTGA
CGCATTTTTGAATGAATAGAAGTTGCAATGGCAATATAGATGTCACCGTT
TCTAAAAATATGACATTGGCCGATCATAGGTTAAATTTCGGTCACGAATC
AGTAGcgtttaattttcaaatgtcaaaatttagtcGTCACTTAAATTCTG
AGTtataaaaagaattttgtcagtAGCTTGTATGCCGGTTTACAATGTCA
CGCTCGTTTCTTTCTATTCGTCATTTCCTTTACatctaaaattaaaataa
atacaaaaaggttgtgaattttaatgaaattttacgAAATGTTTTTATCT
TAGCATTTAATGTATATAATGTTTTTGCTAGAAATACCTCTTGTGTAAAT
ACTAACTCCATTTTTTTTGTTAGTTAATTTTTAATTTAGGATATATCCTT
GAGaatttaatgataaaaaatgtcgAAATACCGTAGCAAAGTTAACTTCA
CGACAATGTTTCCTTTCATGATGTTTCAAAGCTGTCACATACTTAGACAT
CCCTGCCTCGATAACCCGTCGTGGAAATTTAAAAGTCATGATCTCCCGCC
CCTACTTTATATTTAGAAAAGCGTTAAAACCTATGcaatacactcatttt
ttttacaagaactaGTAGATTTTTGACGAGGCTTTTTTTGGTaatttgag
cctcaaattgttcttatcctgttcttattcaTAGGGTGAAATTGGGGTGT
CTTAGGCTTtaaacccaatttttactactttgaccacTAAATTGCTTTAA
ATTGAGTAATTctaggctcagcattgttcttattttcttccgATTTCAAG
cctctttgttcttataaaatcaaTAGTGTCCGTCAATGGCGAATCTctta
ttcttttcttttgaaccAACCACCCTAACTTAAAGACAAAAATTAGGGTA
AGTTTCTCTTGGGGTTATGGTGACTTAAAATCTTTCAAGCTAAAATAAAT
TCCAAAAACAACCCTCAGAAAAAGTAGGCCAACGCGCAAACGCaaacgca
aaattatgagatgtttgcccaacttccttatgcgtgaagctacgAATgat
gtgtttttataaaagtggATTTTTTGTGGAGAGTGATTTGCTGTTCATCC
CATTTATCCATTTTCGGTCACGGTATATCAAAATAATGCATGAACCAAAT
TTTATGTACATTGTGcaactgaaaaatgaaaaaaaaattcgtaaatttca
tcaaattttcctGAAAGTAAACAATTATCTaacttaagtggataaatttt
ggcgtggatttaatttggcgattggccaaaatacgatttttggtggggat
ttaatttggcgatagatcaatttcgtaaaatttggaggggatttaatttg
gcgaattggaaactttgtcacactgaaatgggtgaaaattactcaaaaat
atactaaaaagctgtgatttttcacataattctctttttgttaaatttgg
cggggatttcaTTTGgtgaattttaatgaaattttacgAAATGTTTTTAT
CTTAGCATATAATGTATATAATGTTTTTGCTAGAAATACCTCTTGTGTAA
ATACTAACTCCATTTTTTTTGTTAGTTAACTTTTAATTTAGGATATATCC
TTGAGAATTTAATGATGAAAAATGTCGAAATACCGTAGCAAAGTTAACTT
CAC Run BLAST on NCBI protein sequence of Dll2 distalless homeodomain protein >TCONS_00017798-protein ID=TCONS_00017798-protein|Name=Dll2 distalless homeodomain protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MVVTSDEKPSDAISPSLASAAMSFPPPPQFQGLLPPSGLKIPRFGGMMMD
DTMKMNPFGFSLPFTTMSHVPYLKPVSPKPEDQSEDDKAGSSDDESKDGD
DKNDKNNNKKGGAGGRKSRKPRTIYSSHQLRELNRRFSRTQYLALPERAE
LAAELNLTQTQIKIWFQNKRSKLKKIVKSGGVPPISPTIQSVYNGETRVP
VTQWENSLKAASALAASHLTPPSPSAITFSSSAPTYSHTPASSVHAIPTT
ASSFFQSAVQSSMYANMWYNPPPVPPPTGGDLTNADSSPEAALPTTSTTS
SFPMFPNMDLLSQAAQSMYNQSQSCI Run BLAST on NCBI transcript from alignment at sc0000276:160617..166862- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017798 ID=TCONS_00017798|Name=TCONS_00017798|organism=Clytia hemisphaerica|type=transcript|length=6246bp|location=Sequence derived from alignment at sc0000276:160617..166862- (Clytia hemisphaerica)
ACGGGATTTGACGAAAAAAAAGACGGGAAAACGGTATTTTAAAATCAGAC
AGTGACGGTATTTGACCTTATGCCGGTATTTGAACCTGTACAAACCGGTG
TGACGGTGTTATTATGCATTATTTTGATATACCGTGACCGAAAATGGATA
AACGGGATAAACAGCAAATCACTCTCCACAAAAAATCCACTTTTATAAAA
AAACATCATAGCATTGATTTTGAATAAAAAGGAGTATGGACATTTTTCTT
TTGTGTTTCTACGGTAATTGATCATTATGTCAAATTGCTCTTTTCTTATT
CATATGCAAATGAGCGTCATTCCATTGTTTCACAGTCCTATACACGAGAG
AATTTGATTTTAATTGCAATGTCAAAGAGCGCAAGACAAGTAAATTTATT
TTAGCTCAAATACACGCTACAGGAGACAAGGAGCTTAGAGAAGGGCTTTT
GTATATTGGTGCTATTTTTTTGTTTGTGTGTGGAAAGGACTCACATTTGA
CGACTCTTGTATAGAACAAGAATTCTAATTAACAGAGACACATCACTGAC
GCTGATAATCTATTTAATTCACATCGACTGCAAAATATTGAAGGAATTTG
AAGCAAAAGGATATCCACATAGAGTGAACATCGAGTTTCATTTGCAAGAA
TGGTTGTAACAAGCGATGAAAAACCTAGCGATGCTATTTCACCAAGTTTA
GCAAGTGCGGCAATGAGTTTCCCACCGCCACCACAATTTCAAGGACTACT
GCCACCTTCTGGGTTGAAAATTCCCCGATTTGGTGGAATGATGATGGACG
ATACAATGAAAATGAATCCATTCGGATTCTCGTTGCCTTTTACAACGATG
TCACATGTCCCGTATTTGAAACCGGTTTCCCCGAAACCAGAAGATCAATC
TGAAGATGATAAAGCTGGAAGTTCGGATGATGGTAAGAAAATATTTGAGT
TTTATTTTGAAATTCTTTTTATTCTTGTCTAAATCGTAAATAAACTGTAA
GTTGGTCTAATGTCGACATCCCTCTTATAATTTTTTTTGAATTGTGAAAC
AAGAATATATTTACCAGTACATCGTTTTAAACTGGTGTAATAAGGCTAAC
TATATAATACAAATTTACAGAGTTAAAAATGTTTGGGTCAAATATTTACA
GTTAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGTTAAAAAAAACTAGAATAAAAAT
ATAGTATACATACTAAGGATATTTCCTAAGCGCCAAAAATAGGGAAGTAA
ATGAAAATAAAAATATATTTAGATTTTGATATTTGTTGTTAAGAGGCTTG
TTGATATATCCTCGTTAATGTTCAGGTCTTTCTTACAGAAGACTGATCTG
CTACCACGTAGACAGATACCTACAGCTTTGCAAAGCCCAATGGATAGCTT
TTGCCTCATCCAGGTGATTACTTCACTGTATGGCTTGTCCTGTTTGCTTG
CCATCATTTCGGCCAAACGCGAGATAAATTTTGTACATTCACGTCCCATG
CCGCCAGTCGCAGAGAAGACCAAAGGTGTGAACGATCCATGTTCAATCTC
TAACACACGTTGGTTGTATGCTCTCTTCTTTTCCCGTTCGTTTGAATCAA
AACACTTCTTGAGGTCCTGGGAGACATGTCGTTTTGCAAGTGGGTTAAAA
ACCCTTATGTCGAAATCGCTTGTACAAAAGATTTCTCCTCTCTGACCGCT
AAGCAAAGAAATATAGTTTCCATCAGCGACTCCAACCCTTCTACTATTCC
TATCTCTAAAGAAGGGTGTCGACATTAGACCAAGTTACGGTATAGGGTGT
AAAGCATAAAATACCTCAATTTTGCGGTAAAAATAAAGGACACAACAAGA
ACAATTGGAGACTTAAATGTGTCAGAAAGGTTCATTTTTTAAAAATTTTA
ATAATTATTTCAAGAAAATTATTGAAAAAGACCTTGGGAAATAATTCAAA
CGGCGTAAAAATAATGATAATCTTTGGATGACATTCAAACGCTAGATTTG
ATTTTTATATTAGGCGTAGAAGTATTTGAATTTAAAGATGTTGTTAAGAA
TTGAAAATCTCAAAGACTGTGAAATATTTTTGTACGATATCATATGTCGC
TCGCATGCCCAATTGGGACTTGATAAGTGCAATGCAATTAAGATGAAAGA
AAGACCGCTAAATTACATCGGGTTATTGTTTAATTCACATCACTAATTAT
CGCCGTTTTATTATTCGAGAAAATACGAATTCAAAAAAAAAATTGTACAA
TAAAAGCATAAAGCACTGTGAAAGAAAATCTTGTCAAAAAAACTTGTCTC
ACAAAAATAATTTTTGAATATATTGCTGTGTTTATTTCAAAAATGACAAT
ATTCAAATTGCAATCTATTCCTGTTTTCACTCTAGCATTCCTTATTTTCC
TAAAAACTTAATATATAAAATTAATATTGGATTTCAACTTCTCAAAAGTC
TTCGTAAATAATTCAAATTCAGTTGCAATTCAACGTAAATGTCTCGACGT
TTATGACCGTTAACAAGACCTTGTGACGGGACTTTAATAAAGTAGCTTGA
CAGAAAATTTTCTTCGACGTGACTCTCCAAATTTTATCTAACACTGATAA
AATTGACTTAATTACCCATGGGAGGTCTTTAAACCATTCCATCATCAAAT
TTAAGGAGGTCTCTCAATTTAACTTAAGCAATATTTTCTTGGCATGGCAA
TCACTTTCGTTTTCTATTCTAAAATTTTCTTCTTCTTTCGAAACCTACAT
CTTTTGTTAACATGTACTACAATAACAAAATTTAACAAAAATCCTTAAGA
GGGAACATCTTCTTCGGCATAGTCAAGTCACTAGTAAAATATCTTACACG
TTTTTTTTATAAGAGCATACAAAAGTTTCGAAACCTTTGGATGTTTTAAT
TTTTTTGAGTTTTAAAAATGTCTAAAAATGTTCTTAACTTGTTCTTAAGA
TTTTGGCCATCGAAGCCTTGTGTTCTTATAAAAAACGTGTAACTGAAAAG
CCTCTTCTGTAAGTTGTAAAACTGAAACTTTGAAAATAATTTCGCCTTGT
TTAATCTTTCTAGAATCAAAAGATGGTGATGATAAAAACNCTTCTGTTTA
ATCTTTCTAGAATCAAAAGATGGTGATGATAAAAACGACAAAAACAACAA
CAAGAAGGGCGGAGCTGGAGGGCGGAAATCGCGCAAGCCAAGAACGATAT
ACAGCAGCCATCAACTTCGTGAACTTAACCGACGATTCAGTAGAACACAA
TATTTAGCTTTACCAGAACGAGCTGAACTAGCAGGTATGTAATTTGAATC
TCTAATCTTTCGATGTTTTTTTCCATACTTACAATACTTCAATCCAATAT
TTTTGCCTGAAAATCTTTACTTTGTTGGAAATCGCAATACTAGAGTAGAC
TCTCGCTTATTCGAACTTTTATTATCCGAATCTTTCTATAATTCGAACTT
GTTCCAAGTTTCCGTCAAGGACAAACCCTCGTAAAAATACTTCCTATAAC
TCGAATCTCTCCGTAATTCGACCGAATAAGATTCCCCATTCGAGTTCGAG
AGTTCACTGTGCTTGAATTCGTTGCGTTCATTGGGGGTCATTGGGATAAT
ATGTTCAATAAAAATCATCTTATTTAATCTGTTTCAATTTCATTTTCAGC
TGAACTCAATCTCACACAAACACAAATCAAAATCTGGTTTCAAAACAAAC
GATCCAAACTGAAGAAGATCGTCAAAAGTGGAGGCGTCCCACCTATTAGT
CCAACTATACAATCAGTATACAACGGTGAAACGCGGGTCCCTGTCACTCA
ATGGGAGAACTCACTAAAGGCTGCGTCCGCACTGGCAGCTAGTCATCTAA
CCCCTCCATCACCTTCAGCAATCACCTTTTCATCGTCTGCACCCACCTAC
TCGCATACTCCGGCCTCTTCAGTACACGCAATCCCGACTACTGCATCCAG
CTTCTTCCAGTCTGCAGTCCAATCATCAATGTATGCAAACATGTGGTATA
ATCCTCCCCCAGTTCCCCCACCAACAGGAGGAGACCTAACAAATGCAGAT
AGCTCCCCGGAAGCAGCACTTCCGACTACCTCAACGACATCATCTTTTCC
AATGTTTCCAAACATGGACTTACTAAGTCAAGCAGCTCAATCTATGTATA
ATCAATCACAATCATGCATTTAAACCTTTTTTCTAGATTTTTTAATGAAA
TTTTTCATTTTCTTTTTCAAAATTTTCTCATACGTTTGAACTAAAAATTA
TTACTCATACCGCTTTGTAGAGAATTGGAGCTTTGAAACGTGACGCATTT
TTGAATGAATAGAAGTTGCAATGGCAATATAGATGTCACCGTTTCTAAAA
ATATGACATTGGCCGATCATAGGTTAAATTTCGGTCACGAATCAGTAGCG
TTTAATTTTCAAATGTCAAAATTTAGTCGTCACTTAAATTCTGAGTTATA
AAAAGAATTTTGTCAGTAGCTTGTATGCCGGTTTACAATGTCACGCTCGT
TTCTTTCTATTCGTCATTTCCTTTACATCTAAAATTAAAATAAATACAAA
AAGGTTGTGAATTTTAATGAAATTTTACGAAATGTTTTTATCTTAGCATT
TAATGTATATAATGTTTTTGCTAGAAATACCTCTTGTGTAAATACTAACT
CCATTTTTTTTGTTAGTTAATTTTTAATTTAGGATATATCCTTGAGAATT
TAATGATAAAAAATGTCGAAATACCGTAGCAAAGTTAACTTCACGACAAT
GTTTCCTTTCATGATGTTTCAAAGCTGTCACATACTTAGACATCCCTGCC
TCGATAACCCGTCGTGGAAATTTAAAAGTCATGATCTCCCGCCCCTACTT
TATATTTAGAAAAGCGTTAAAACCTATGCAATACACTCATTTTTTTTACA
AGAACTAGTAGATTTTTGACGAGGCTTTTTTTGGTAATTTGAGCCTCAAA
TTGTTCTTATCCTGTTCTTATTCATAGGGTGAAATTGGGGTGTCTTAGGC
TTTAAACCCAATTTTTACTACTTTGACCACTAAATTGCTTTAAATTGAGT
AATTCTAGGCTCAGCATTGTTCTTATTTTCTTCCGATTTCAAGCCTCTTT
GTTCTTATAAAATCAATAGTGTCCGTCAATGGCGAATCTCTTATTCTTTT
CTTTTGAACCAACCACCCTAACTTAAAGACAAAAATTAGGGTAAGTTTCT
CTTGGGGTTATGGTGACTTAAAATCTTTCAAGCTAAAATAAATTCCAAAA
ACAACCCTCAGAAAAAGTAGGCCAACGCGCAAACGCAAACGCAAAATTAT
GAGATGTTTGCCCAACTTCCTTATGCGTGAAGCTACGAATGATGTGTTTT
TATAAAAGTGGATTTTTTGTGGAGAGTGATTTGCTGTTCATCCCATTTAT
CCATTTTCGGTCACGGTATATCAAAATAATGCATGAACCAAATTTTATGT
ACATTGTGCAACTGAAAAATGAAAAAAAAATTCGTAAATTTCATCAAATT
TTCCTGAAAGTAAACAATTATCTAACTTAAGTGGATAAATTTTGGCGTGG
ATTTAATTTGGCGATTGGCCAAAATACGATTTTTGGTGGGGATTTAATTT
GGCGATAGATCAATTTCGTAAAATTTGGAGGGGATTTAATTTGGCGAATT
GGAAACTTTGTCACACTGAAATGGGTGAAAATTACTCAAAAATATACTAA
AAAGCTGTGATTTTTCACATAATTCTCTTTTTGTTAAATTTGGCGGGGAT
TTCATTTGGTGAATTTTAATGAAATTTTACGAAATGTTTTTATCTTAGCA
TATAATGTATATAATGTTTTTGCTAGAAATACCTCTTGTGTAAATACTAA
CTCCATTTTTTTTGTTAGTTAACTTTTAATTTAGGATATATCCTTGAGAA
TTTAATGATGAAAAATGTCGAAATACCGTAGCAAAGTTAACTTCAC Coding sequence (CDS) from alignment at sc0000276:160617..166862- >TCONS_00017798 ID=TCONS_00017798|Name=TCONS_00017798|organism=Clytia hemisphaerica|type=CDS|length=2943bp|location=Sequence derived from alignment at sc0000276:160617..166862- (Clytia hemisphaerica)
CTGAACTCAATCTCACACAAACACAAATCAAAATCTGGTTTCAAAACAAA
CGATCCAAACTGAAGAAGATCGTCAAAAGTGGAGGCGTCCCACCTATTAG
TCCAACTATACAATCAGTATACAACGGTGAAACGCGGGTCCCTGTCACTC
AATGGGAGAACTCACTAAAGGCTGCGTCCGCACTGGCAGCTAGTCATCTA
ACCCCTCCATCACCTTCAGCAATCACCTTTTCATCGTCTGCACCCACCTA
CTCGCATACTCCGGCCTCTTCAGTACACGCAATCCCGACTACTGCATCCA
GCTTCTTCCAGTCTGCAGTCCAATCATCAATGTATGCAAACATGTGGTAT
AATCCTCCCCCAGTTCCCCCACCAACAGGAGGAGACCTAACAAATGCAGA
TAGCTCCCCGGAAGCAGCACTTCCGACTACCTCAACGACATCATCTTTTC
CAATGTTTCCAAACATGGACTTACTAAGTCAAGCAGCTCAATCTATGTAT
AATCAATCACAATCATGCATTTAAAATCAAAAGATGGTGATGATAAAAAC
GACAAAAACAACAACAAGAAGGGCGGAGCTGGAGGGCGGAAATCGCGCAA
GCCAAGAACGATATACAGCAGCCATCAACTTCGTGAACTTAACCGACGAT
TCAGTAGAACACAATATTTAGCTTTACCAGAACGAGCTGAACTAGCAGAT
GGTTGTAACAAGCGATGAAAAACCTAGCGATGCTATTTCACCAAGTTTAG
CAAGTGCGGCAATGAGTTTCCCACCGCCACCACAATTTCAAGGACTACTG
CCACCTTCTGGGTTGAAAATTCCCCGATTTGGTGGAATGATGATGGACGA
TACAATGAAAATGAATCCATTCGGATTCTCGTTGCCTTTTACAACGATGT
CACATGTCCCGTATTTGAAACCGGTTTCCCCGAAACCAGAAGATCAATCT
GAAGATGATAAAGCTGGAAGTTCGGATGATGCTGAACTCAATCTCACACA
AACACAAATCAAAATCTGGTTTCAAAACAAACGATCCAAACTGAAGAAGA
TCGTCAAAAGTGGAGGCGTCCCACCTATTAGTCCAACTATACAATCAGTA
TACAACGGTGAAACGCGGGTCCCTGTCACTCAATGGGAGAACTCACTAAA
GGCTGCGTCCGCACTGGCAGCTAGTCATCTAACCCCTCCATCACCTTCAG
CAATCACCTTTTCATCGTCTGCACCCACCTACTCGCATACTCCGGCCTCT
TCAGTACACGCAATCCCGACTACTGCATCCAGCTTCTTCCAGTCTGCAGT
CCAATCATCAATGTATGCAAACATGTGGTATAATCCTCCCCCAGTTCCCC
CACCAACAGGAGGAGACCTAACAAATGCAGATAGCTCCCCGGAAGCAGCA
CTTCCGACTACCTCAACGACATCATCTTTTCCAATGTTTCCAAACATGGA
CTTACTAAGTCAAGCAGCTCAATCTATGTATAATCAATCACAATCATGCA
TTTAAAATCAAAAGATGGTGATGATAAAAACGACAAAAACAACAACAAGA
AGGGCGGAGCTGGAGGGCGGAAATCGCGCAAGCCAAGAACGATATACAGC
AGCCATCAACTTCGTGAACTTAACCGACGATTCAGTAGAACACAATATTT
AGCTTTACCAGAACGAGCTGAACTAGCAGATGGTTGTAACAAGCGATGAA
AAACCTAGCGATGCTATTTCACCAAGTTTAGCAAGTGCGGCAATGAGTTT
CCCACCGCCACCACAATTTCAAGGACTACTGCCACCTTCTGGGTTGAAAA
TTCCCCGATTTGGTGGAATGATGATGGACGATACAATGAAAATGAATCCA
TTCGGATTCTCGTTGCCTTTTACAACGATGTCACATGTCCCGTATTTGAA
ACCGGTTTCCCCGAAACCAGAAGATCAATCTGAAGATGATAAAGCTGGAA
GTTCGGATGATGCTGAACTCAATCTCACACAAACACAAATCAAAATCTGG
TTTCAAAACAAACGATCCAAACTGAAGAAGATCGTCAAAAGTGGAGGCGT
CCCACCTATTAGTCCAACTATACAATCAGTATACAACGGTGAAACGCGGG
TCCCTGTCACTCAATGGGAGAACTCACTAAAGGCTGCGTCCGCACTGGCA
GCTAGTCATCTAACCCCTCCATCACCTTCAGCAATCACCTTTTCATCGTC
TGCACCCACCTACTCGCATACTCCGGCCTCTTCAGTACACGCAATCCCGA
CTACTGCATCCAGCTTCTTCCAGTCTGCAGTCCAATCATCAATGTATGCA
AACATGTGGTATAATCCTCCCCCAGTTCCCCCACCAACAGGAGGAGACCT
AACAAATGCAGATAGCTCCCCGGAAGCAGCACTTCCGACTACCTCAACGA
CATCATCTTTTCCAATGTTTCCAAACATGGACTTACTAAGTCAAGCAGCT
CAATCTATGTATAATCAATCACAATCATGCATTTAAAATCAAAAGATGGT
GATGATAAAAACGACAAAAACAACAACAAGAAGGGCGGAGCTGGAGGGCG
GAAATCGCGCAAGCCAAGAACGATATACAGCAGCCATCAACTTCGTGAAC
TTAACCGACGATTCAGTAGAACACAATATTTAGCTTTACCAGAACGAGCT
GAACTAGCAGATGGTTGTAACAAGCGATGAAAAACCTAGCGATGCTATTT
CACCAAGTTTAGCAAGTGCGGCAATGAGTTTCCCACCGCCACCACAATTT
CAAGGACTACTGCCACCTTCTGGGTTGAAAATTCCCCGATTTGGTGGAAT
GATGATGGACGATACAATGAAAATGAATCCATTCGGATTCTCGTTGCCTT
TTACAACGATGTCACATGTCCCGTATTTGAAACCGGTTTCCCCGAAACCA
GAAGATCAATCTGAAGATGATAAAGCTGGAAGTTCGGATGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017798-exon-sc0000276-1575043694:165931..166862 | TCONS_00017798-exon-sc0000276-1575043694:165931..166862 | Clytia hemisphaerica | exon |
| TCONS_00017798-exon-sc0000276-1575043694:163279..163452 | TCONS_00017798-exon-sc0000276-1575043694:163279..163452 | Clytia hemisphaerica | exon |
| TCONS_00017798-exon-sc0000276-1575043694:160617..162913 | TCONS_00017798-exon-sc0000276-1575043694:160617..162913 | Clytia hemisphaerica | exon |
| TCONS_00017798-exon-sc0000276-1510915933:165931..166862 | TCONS_00017798-exon-sc0000276-1510915933:165931..166862 | Clytia hemisphaerica | exon |
| TCONS_00017798-exon-sc0000276-1510915933:163279..163452 | TCONS_00017798-exon-sc0000276-1510915933:163279..163452 | Clytia hemisphaerica | exon |
| TCONS_00017798-exon-sc0000276-1510915933:160617..162913 | TCONS_00017798-exon-sc0000276-1510915933:160617..162913 | Clytia hemisphaerica | exon |
| TCONS_00017798-exon-sc0000276-1491911889:165931..166862 | TCONS_00017798-exon-sc0000276-1491911889:165931..166862 | Clytia hemisphaerica | exon |
| TCONS_00017798-exon-sc0000276-1491911889:163279..163452 | TCONS_00017798-exon-sc0000276-1491911889:163279..163452 | Clytia hemisphaerica | exon |
| TCONS_00017798-exon-sc0000276-1491911889:160617..162913 | TCONS_00017798-exon-sc0000276-1491911889:160617..162913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000276 | supercontig | sc0000276:160617..166862 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00017798 vs. Swiss-Prot (Human)
Match: DLX5 (Homeobox protein DLX-5 OS=Homo sapiens GN=DLX5 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 4.371e-16 Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 2
Query: 1010 PRTIYSSHQLRELNRRFSRTQYXXXXXXXXXXXXXNLTQTQIKIWFQNKRSKLKKIVKSGGVPP 1201
PRTIYSS QL L RRF +TQYLALPERAELAA L LTQTQ+KIWFQNKRSK+KKI+K+G +PP
Sbjct: 140 PRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPP 203
The following BLAST results are available for this feature:
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