TCONS_00017947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017947
Unique NameTCONS_00017947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length995

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017947 ID=TCONS_00017947|Name=TCONS_00017947|organism=Clytia hemisphaerica|type=transcript|length=995bp
ACCCAAGTTTGTCCAAATGATGATGCGCCGTAAGCTCTAATCATTAAAAA
AACAACCTCAAAATCGTGGACGCGAAGCAatgaaaacattgataaagAAG
TTCAAACGATCAGATGAGAATCAATACAATcatattttaatctaattttc
taagaaattgtatGTTTCAAACTCTGAAAAAacttgaatgttcttaaaat
gttcttaaatttataGCTTAGATATCGTATGTTCTTATTATATAATcata
ttgttttttttcgttctttcggttaaattttttttgcaagaacGTCTGAA
GATTTTGAAACCTTCAGACCGTgggttttaagtctaaaaaatgTTCGTAG
TATGCTCCTATTTTTAgtccaattttctaaaaaaaaattggatgttttag
aATATGAAAAAACTTTCACGTTGTTTCTAGAATTTTCTTAATTCTACCTA
AGGTACTAGCCTTTGCAGGACCTTAACCCTAAGAATCaacttattaagtg
actttgcttggagacttgcGTTATCTTGCACGACCAAGGAGACCTATTTT
GAATTGTTAGATTACAAGTGTAATGAAAGCGCATAGAAATAAAGCATGTG
CACGTCTGACGTTTCGGAAAAGTAAGACTTGAAAGTCAGTCAATTTACGA
AATTTACCACAGTGAAGACCTAGACGAATTGTTTAGATCTAACAATGCAT
GCACGTCAGACGCTTCGGAAATGTTGGACGTGAAAGTCCGTCAATTTCGA
ATTTGACGGTAGTGAAAACCTGACGATTTCAGGTCTACATACATTGCGAT
ACTTGCCCATTTTTTTATAGATTAGGGGTTGTCATTATAAAATATAACTA
TCGGCATCATCGATGCTACCGGTTTTCAAATGAATctctttacaaaaatg
tctaacTAAATTTTGAACATTGCCATTTATGTTGACGATAAGTTTATATA
CGGTTGACCCAAAGCTAATACCACGATATTTTCTCGGATATTTCG
Run BLAST on NCBI

transcript from alignment at sc0000279:330847..332254-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017947 ID=TCONS_00017947|Name=TCONS_00017947|organism=Clytia hemisphaerica|type=transcript|length=1408bp|location=Sequence derived from alignment at sc0000279:330847..332254- (Clytia hemisphaerica)
ACCCAAGTTTGTCCAAATGATGATGCGCCGTAAGCTCTAATCATTAAAAA
GTAAGTTCATTTTATAGATTACGAGATGATTTCAAAATCTTTTAAATCAA
AATAAGAAAAGAATTTTTAATAAAAACTTCAACCACAGCGTCAACATTCG
GATTTTTGACATCGCACACGTAACAAAATTCTTCTTATGACTTGATTTTT
TTCCTCTGATGGTTCAATTTGAAGCAACTTCAAAAATTTACCGTGCACTT
TAGAAAATTGTGGCCATTTGTTATCAGGTTATTTAAAAATTTGTTTTGCT
AAATAGGTTTTTTGGGCTATTTTTTGATTGGGTCAATCCTAAAATTTCCT
CTGTTGGATTCTCTATCCCTAAATCCACCTTAATTTTGATAACATCATCG
GACGTTCAGAAAATCGGACAGTTTCAATACATATATAACTTGTAAAATTA
CTCTTTTTTTCAGAACAACCTCAAAATCGTGGACGCGAAGCAATGAAAAC
ATTGATAAAGAAGTTCAAACGATCAGATGAGAATCAATACAATCATATTT
TAATCTAATTTTCTAAGAAATTGTATGTTTCAAACTCTGAAAAAACTTGA
ATGTTCTTAAAATGTTCTTAAATTTATAGCTTAGATATCGTATGTTCTTA
TTATATAATCATATTGTTTTTTTTCGTTCTTTCGGTTAAATTTTTTTTGC
AAGAACGTCTGAAGATTTTGAAACCTTCAGACCGTGGGTTTTAAGTCTAA
AAAATGTTCGTAGTATGCTCCTATTTTTAGTCCAATTTTCTAAAAAAAAA
TTGGATGTTTTAGAATATGAAAAAACTTTCACGTTGTTTCTAGAATTTTC
TTAATTCTACCTAAGGTACTAGCCTTTGCAGGACCTTAACCCTAAGAATC
AACTTATTAAGTGACTTTGCTTGGAGACTTGCGTTATCTTGCACGACCAA
GGAGACCTATTTTGAATTGTTAGATTACAAGTGTAATGAAAGCGCATAGA
AATAAAGCATGTGCACGTCTGACGTTTCGGAAAAGTAAGACTTGAAAGTC
AGTCAATTTACGAAATTTACCACAGTGAAGACCTAGACGAATTGTTTAGA
TCTAACAATGCATGCACGTCAGACGCTTCGGAAATGTTGGACGTGAAAGT
CCGTCAATTTCGAATTTGACGGTAGTGAAAACCTGACGATTTCAGGTCTA
CATACATTGCGATACTTGCCCATTTTTTTATAGATTAGGGGTTGTCATTA
TAAAATATAACTATCGGCATCATCGATGCTACCGGTTTTCAAATGAATCT
CTTTACAAAAATGTCTAACTAAATTTTGAACATTGCCATTTATGTTGACG
ATAAGTTTATATACGGTTGACCCAAAGCTAATACCACGATATTTTCTCGG
ATATTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010059XLOC_010059Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017947-exon-sc0000279-1575043694:332205..332254TCONS_00017947-exon-sc0000279-1575043694:332205..332254Clytia hemisphaericaexon
TCONS_00017947-exon-sc0000279-1575043694:330847..331791TCONS_00017947-exon-sc0000279-1575043694:330847..331791Clytia hemisphaericaexon
TCONS_00017947-exon-sc0000279-1510915933:332205..332254TCONS_00017947-exon-sc0000279-1510915933:332205..332254Clytia hemisphaericaexon
TCONS_00017947-exon-sc0000279-1510915933:330847..331791TCONS_00017947-exon-sc0000279-1510915933:330847..331791Clytia hemisphaericaexon
TCONS_00017947-exon-sc0000279-1491911889:332205..332254TCONS_00017947-exon-sc0000279-1491911889:332205..332254Clytia hemisphaericaexon
TCONS_00017947-exon-sc0000279-1491911889:330847..331791TCONS_00017947-exon-sc0000279-1491911889:330847..331791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:330847..332254 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0902742	0.0899006	0.0511065	0.187999	1.33914	1.60506	1.87465	2.51464	2.08711	0.829361	1.06949	1.91385	0.761723	0.681722	7.68552	8.93959	1.41996	1.0899	0.705413	0.636773	0.771437	0.41348	12.8311	9.21345	2.31021	3.13123	1.73705	1.00741	36.9821	48.0783
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top