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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018052 ID=TCONS_00018052|Name=TCONS_00018052|organism=Clytia hemisphaerica|type=transcript|length=1938bp
AGCTtataaaagaatgaaaaggaATTTCTATGAATTATAATTACATCAAG
ACATTGTCAATCTTAAAAAGGAAGAGGAAGAACctattataagaacaatc
aaGAAAATAACAATACATTTCAATACGATAACCCCATAcgcccgcggcaa
tttctattgtTTCCAAAAGAGCATTAATATCGTTATTAAACATTTTATGA
CTACATAGGACGTTCACTTTAAACTGAAGAGTCAGTATACCTTTTTATCG
GGTGATGAACAGTGGCCATACAGAGGACAATACagataaaaagaaaatgt
tgTCCGTGCAAAGGCCGTCATCTGCAACACATTGCGCATGCTGTACGAAC
CATGATGGAGGATACACCAATGCATCACATTCACTAACTTCGCCGTTTTC
TCGTTCACCAACAAGCTCTGGATCTGCAATCAGATTCATACGACAACAGA
GTTTTGACCAACCACCACACCAGAAAGgaccaacaaaaacaaagattttc
acACCAAATATCAACCTAAGAGATCTTTTTTTATCTGAAGGAACATTTTC
CAATTCTTCCTCTCAACTCATAAGTAATAATCGGAAACGCAAGTCGACTG
AAGAGAACCAGCAACTATCTCATTCACCAAAGACTACAGAACCGCCACCC
TTGTTCAAATCAAGGTTAACCGATCATCTTGCTAACGGGTTCAACGCTTT
AGAATCAAGCAACAGTCTGTTAAAGAACACTCCAAcaacaaaatattata
aatatcAACAACCAACCACTACTTTATCCATAGTTAAACCGAAACACCAT
AACCCTGGTCAATTAATTCGAATCCAACATTTTGAAGAATCGCACAAAga
gaaaattgagaaatttccaATGACACGAAGTTCACCAGGACCTTCAGGTT
TCAACTACGAATTGAAACAAGAACCTTCTCAAAATTTACCATATGATATC
CAatcaacaaatataaaatacgAGAGACGTTCACCAAATATGCAATCTCC
CTTCGAGAGGACCAACTCACCATATCGTTACCCCTCACCACATAACAGTC
AAAGAGCATCACCTAATCTGCAATCATCAACGACGATACTAACTTCCCCA
CCACCTTTAGTTCGAACAACGCCACCACCATCAATGCCGCCACACACAAC
ACCATACGTGGGCGGTGCATCGAATGTAGCATCAGTGAGATACAGGAGCT
TTAAGCAACCCAATAGTTTTGATTCCACATCAGCTAGCATTGATTCATCT
CTTAGTGGAAGCGATGAAGAGGAAAACGACTCAATGGTTTTGATGAAGCC
AAGACCAACTCCAAGTAGAGTAGTCGaacGTGCAAAGTATGAACGTACAA
AATACGAACGCACAATAAAGTTGTACAAATTTTTGATCGACTTATTAGAA
GACCAACACCCATGTGTCATGTGGAtcgatcggaaaatcgggatcTTCAA
AATCACCGATTCGGAACAATTAGCCCAATTATGGGGTGAAGTCAAACTTA
ATGCTTCGATGACGTATGAAAAACTTGCCCGCTCTTTCAGACATTATTAC
AAGAAAGGAATCTTAGATAGCGGAGAAACTGTCATTTCACCGGTATCGAA
AAATGGTAAACGCAAACTGTACTATAAATTCAGTGCAGTCACCTTAAAGC
GTTTTTTAGATATTGATCCTGAATAAATATTGCTGACTGATGATTAGTCA
CTATCTGTTTGGCAATCTCGTACCCAGGAAGTCTATTTATATTACAtggg
attaaaaaaaaatgcccTGGAAATGTAAAATCTACTTTTGATCTTTTATT
CATTTATACATATAAATCTTTATAAATCTCTTATAGATAGTTTTATAAGA
AATATTGTAAATATTATAAAATAACTATAAAGCAAACACAATACAGTTAT
GTTACAGTTAATAACTCATACAATATATTTATTTCTCA Run BLAST on NCBI protein sequence of TCONS_00018052-protein >TCONS_00018052-protein ID=TCONS_00018052-protein|Name=TCONS_00018052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
MNSGHTEDNTDKKKMLSVQRPSSATHCACCTNHDGGYTNASHSLTSPFSR
SPTSSGSAIRFIRQQSFDQPPHQKGPTKTKIFTPNINLRDLFLSEGTFSN
SSSQLISNNRKRKSTEENQQLSHSPKTTEPPPLFKSRLTDHLANGFNALE
SSNSLLKNTPTTKYYKYQQPTTTLSIVKPKHHNPGQLIRIQHFEESHKEK
IEKFPMTRSSPGPSGFNYELKQEPSQNLPYDIQSTNIKYERRSPNMQSPF
ERTNSPYRYPSPHNSQRASPNLQSSTTILTSPPPLVRTTPPPSMPPHTTP
YVGGASNVASVRYRSFKQPNSFDSTSASIDSSLSGSDEEENDSMVLMKPR
PTPSRVVERAKYERTKYERTIKLYKFLIDLLEDQHPCVMWIDRKIGIFKI
TDSEQLAQLWGEVKLNASMTYEKLARSFRHYYKKGILDSGETVISPVSKN
GKRKLYYKFSAVTLKRFLDIDPE Run BLAST on NCBI transcript from alignment at sc0000284:300099..304006+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018052 ID=TCONS_00018052|Name=TCONS_00018052|organism=Clytia hemisphaerica|type=transcript|length=3908bp|location=Sequence derived from alignment at sc0000284:300099..304006+ (Clytia hemisphaerica)
AGCTtataaaagaatgaaaaggaATTTCTATGAATTATAATTACATCAAG
ACATTGTCAATCTTAAAAAGGAAGAGGAAGAACctattataagaacaatc
aaGAAAATAACAATACATTTCAATACGATAACCCCATAcgcccgcggcaa
tttctattgtTTCCAAAAGAGCATTAATATCGTTATTAAACATTTTATGA
CTACATAGGACGTTCACTTTAAACTGAAGAGTCAGTATACCTTTTTATCG
GGTGATGAACAGTGGCCATACAGAGGACAATACagataaaaagaaaatgt
tgTCCGTGCAAAGGCCGTCATCTGCAACACATTGCGCATGCTGTACGAAC
CATGATGGAGGATACACCAATGCATCACATTCACTAACTTCGCCGTTTTC
TCGTTCACCAACAAGCTCTGGATCTGCAATCAGATTCATACGACAACAGA
GTTTTGACCAACCACCACACCAGAAAGgaccaacaaaaacaaagattttc
acACCAAATATCAACCTAAGAGATCTTTTTTTATCTGAAGGAACATTTTC
CAATTCTTCCTCTCAACTCATAAGTAATAATCGGAAACGCAAGTCGACTG
AAGAGAACCAGCAACTATCTCATTCACCAAAGACTACAGAACCGCCACCC
TTGTTCAAATCAAGGTTAACCGATCATCTTGCTAACGGGTTCAACGCTTT
AGAATCAAGCAACAGTCTGTTAAAGAACACTCCAAcaacaaaatattata
aatatcAACAACCAACCACTACTTTATCCATAGTTAAACCGAAACACCAT
AACCCTGGTCAATTAATTCGAATCCAACATTTTGAAGAATCGCACAAAga
gaaaattgagaaatttccaATGACACGAAGTTCACCAGGACCTTCAGGTT
TCAACTACGAATTGAAACAAGAACCTTCTCAAAATTTACCATATGATATC
CAatcaacaaatataaaatacgAGAGACGTTCACCAAATATGCAATCTCC
CTTCGAGAGGACCAACTCACCATATCGTTACCCCTCACCACATAACAGTC
AAAGAGCATCACCTAATCTGCAATCATCAACGACGATACTAACTTCCCCA
CCACCTTTAGTTCGAACAACGCCACCACCATCAATGCCGCCACACACAAC
ACCATACGTGGGCGGTGCATCGAATGTAGCATCAGTGAGATACAGGAGCT
TTAAGCAACCCAATAGTTTTGATTCCACATCAGCTAGCATTGATTCATCT
CTTAGTGGAAGCGATGAAGAGGAAAACGACTCAATGGTTTTGATGAAGCC
AAGACCAACTCCAAGTAGAGTAGTCGGTAAGAAGAATTTTTATCATTACA
ACCcctctgtctcagtgacccggtgagaaCCTTCAAGCCAGTGGATAGAA
gctaaaaatgctaaaaatgttAATGGGGATAAATAATCAACTTTTTTATT
GAAGGGAGATTTCAAGCTATCTTTTTAGCAGCCAAAACATTGGTTGGGGT
TCTCCAAATCTATGTTTTTGGATCTCGCCGGGCCAATGATGGGGATGTgt
tctctctttttttctttttttttcatccgAGTATACCATGAATATCGAAT
CATATGAGTGATTAAACTTTAGTACCTTTTGATTTAAACTTTATAAGTAT
GATTTGTGGACAATGTCATTTCATCATAATAGATTATCTCCCAAATTATC
TCTAAGGCAACTTTGTAGTTAAAAAGGTTGTTGGGTGGCAGGTTCTTTTG
TTTCATTTACactaatttaaaaaataaaaacaattcctCGTTGGTGGGCA
TTCTCAATTAAGAATATAATTAGACAAAATGAAGAAAGTTTTAATTCCAA
AAtgaagaaaagtgaaaaattttacGTAACAGAGGCAACAGCGATTAagt
agaaagaaaaattgattatgtttttttcttaaagagCTTTTCCTTGCTAC
AAAATATACCATTTAGGTGTTACCGATAGTTTTCTCTTGTTAAAGATGGT
ATCTATATGCGGCgggaaaaaaaacaatatagttccttactttttttttg
aaaaacgcGGAAAGAAAGCTTTATAGTGTATCCCTTCCAATTTCAAAGAA
TTTCCGATTAAAGATTACAAAACTATCTATTctagtctattcacgataag
tgtgcactcttttttcttttacctataacttttgaaggaattcttcaatc
ttcataaatttggtatcgttggagagatatttNNgaaattctaaaaatga
agatgaaaatgaagaagaaaaaatgaagatcttttagaaaagtgctataa
ccaTCATTTTCACttaagtgaatccttgatcatcgaacgtcatcactgaa
CAGACTTTAGAAACAATCATGGCACGTCATGGCacataaaaaagttattt
tcgtattgaaaaaaatgcttaaattCCGCATTCTGCATTAATAATTCTAA
AAGCGTAAATAATTATCATTTCATTTGATACTTTaccaaagtaaattttt
ttttgactttcccAGTTATTTGATCCATTTGGACGAAGTATATTGCGAAA
TACTTTTATTTGTGAAGGAAATATCATTGAGACAAACAAACTAAAAAAGT
GCACTAAGTAAATAAGAATTCTTTTCTAGACGCAAAttgattttgggatt
tttttgtCTAGTACCTTTCCCGTCATGGGACctttattagcgagtttatg
tatttacccttttgaggacggtaaagtgactaaagcgatttggaaaacCC
CACAGTtctgccccgcaaaatcgaggatggtaaaagtgctgatttaccgt
cgtcctcagttggtcaggaccaagaaaaattagaaccttacggtctccgt
cacagaaaaacacacatacataaactcggtattattTACAATAAGAATGa
agaaagttaatttttttcccCATTAAACTGTAAGAAAATTCGTCTTGATT
TCCCGGTGGTATAATTTATTAAAGTTTCAAGTCAAAGCTTTTTTTGTTAG
TGTCAAATTTCATATTGCATGGCACTCGAATTAAGAGACACAATTGAACG
TGTACACTTAAAATACACGTCATAACAAAATGAATACCATTCCAAACTTA
AAAATTGTTGTCAAGTATTTTGAGgactttttttaatgagaacaCATTAT
GAAACTTAAAGCAAATGTTTTAAAAGCCAAGCAGGATCACCATCATAATA
TAAATCTTATGAAGATTTTAGGTAATTAATCAGGAATTTAAATAATATTA
TAAAACACAATGTtctaatgttcttaacttattcttatttttacagaacG
TGCAAAGTATGAACGTACAAAATACGAACGCACAATAAAGTTGTACAAAT
TTTTGATCGACTTATTAGAAGACCAACACCCATGTGTCATGTGGAtcgat
cggaaaatcgggatcTTCAAAATCACCGATTCGGAACAATTAGCCCAATT
ATGGGGTGAAGTCAAACTTAATGCTTCGATGACGTATGAAAAACTTGCCC
GCTCTTTCAGACATTATTACAAGAAAGGAATCTTAGATAGCGGAGAAACT
GTCATTTCACCGGTATCGAAAAATGGTAAACGCAAACTGTACTATAAATT
CAGTGCAGTCACCTTAAAGCGTTTTTTAGATATTGATCCTGAATAAATAT
TGCTGACTGATGATTAGTCACTATCTGTTTGGCAATCTCGTACCCAGGAA
GTCTATTTATATTACAtgggattaaaaaaaaatgcccTGGAAATGTAAAA
TCTACTTTTGATCTTTTATTCATTTATACATATAAATCTTTATAAATCTC
TTATAGATAGTTTTATAAGAAATATTGTAAATATTATAAAATAACTATAA
AGCAAACACAATACAGTTATGTTACAGTTAATAACTCATACAATATATTT
ATTTCTCA Coding sequence (CDS) from alignment at sc0000284:300099..304006+ >TCONS_00018052 ID=TCONS_00018052|Name=TCONS_00018052|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0000284:300099..304006+ (Clytia hemisphaerica)
ATGAACAGTGGCCATACAGAGGACAATACagataaaaagaaaatgttgTC
CGTGCAAAGGCCGTCATCTGCAACACATTGCGCATGCTGTACGAACCATG
ATGGAGGATACACCAATGCATCACATTCACTAACTTCGCCGTTTTCTCGT
TCACCAACAAGCTCTGGATCTGCAATCAGATTCATACGACAACAGAGTTT
TGACCAACCACCACACCAGAAAGgaccaacaaaaacaaagattttcacAC
CAAATATCAACCTAAGAGATCTTTTTTTATCTGAAGGAACATTTTCCAAT
TCTTCCTCTCAACTCATAAGTAATAATCGGAAACGCAAGTCGACTGAAGA
GAACCAGCAACTATCTCATTCACCAAAGACTACAGAACCGCCACCCTTGT
TCAAATCAAGGTTAACCGATCATCTTGCTAACGGGTTCAACGCTTTAGAA
TCAAGCAACAGTCTGTTAAAGAACACTCCAAcaacaaaatattataaata
tcAACAACCAACCACTACTTTATCCATAGTTAAACCGAAACACCATAACC
CTGGTCAATTAATTCGAATCCAACATTTTGAAGAATCGCACAAAgagaaa
attgagaaatttccaATGACACGAAGTTCACCAGGACCTTCAGGTTTCAA
CTACGAATTGAAACAAGAACCTTCTCAAAATTTACCATATGATATCCAat
caacaaatataaaatacgAGAGACGTTCACCAAATATGCAATCTCCCTTC
GAGAGGACCAACTCACCATATCGTTACCCCTCACCACATAACAGTCAAAG
AGCATCACCTAATCTGCAATCATCAACGACGATACTAACTTCCCCACCAC
CTTTAGTTCGAACAACGCCACCACCATCAATGCCGCCACACACAACACCA
TACGTGGGCGGTGCATCGAATGTAGCATCAGTGAGATACAGGAGCTTTAA
GCAACCCAATAGTTTTGATTCCACATCAGCTAGCATTGATTCATCTCTTA
GTGGAAGCGATGAAGAGGAAAACGACTCAATGGTTTTGATGAAGCCAAGA
CCAACTCCAAGTAGAGTAGTCGaacGTGCAAAGTATGAACGTACAAAATA
CGAACGCACAATAAAGTTGTACAAATTTTTGATCGACTTATTAGAAGACC
AACACCCATGTGTCATGTGGAtcgatcggaaaatcgggatcTTCAAAATC
ACCGATTCGGAACAATTAGCCCAATTATGGGGTGAAGTCAAACTTAATGC
TTCGATGACGTATGAAAAACTTGCCCGCTCTTTCAGACATTATTACAAGA
AAGGAATCTTAGATAGCGGAGAAACTGTCATTTCACCGGTATCGAAAAAT
GGTAAACGCAAACTGTACTATAAATTCAGTGCAGTCACCTTAAAGCGTTT
TTTAGATATTGATCCTGAATAAATGAACAGTGGCCATACAGAGGACAATA
CagataaaaagaaaatgttgTCCGTGCAAAGGCCGTCATCTGCAACACAT
TGCGCATGCTGTACGAACCATGATGGAGGATACACCAATGCATCACATTC
ACTAACTTCGCCGTTTTCTCGTTCACCAACAAGCTCTGGATCTGCAATCA
GATTCATACGACAACAGAGTTTTGACCAACCACCACACCAGAAAGgacca
acaaaaacaaagattttcacACCAAATATCAACCTAAGAGATCTTTTTTT
ATCTGAAGGAACATTTTCCAATTCTTCCTCTCAACTCATAAGTAATAATC
GGAAACGCAAGTCGACTGAAGAGAACCAGCAACTATCTCATTCACCAAAG
ACTACAGAACCGCCACCCTTGTTCAAATCAAGGTTAACCGATCATCTTGC
TAACGGGTTCAACGCTTTAGAATCAAGCAACAGTCTGTTAAAGAACACTC
CAAcaacaaaatattataaatatcAACAACCAACCACTACTTTATCCATA
GTTAAACCGAAACACCATAACCCTGGTCAATTAATTCGAATCCAACATTT
TGAAGAATCGCACAAAgagaaaattgagaaatttccaATGACACGAAGTT
CACCAGGACCTTCAGGTTTCAACTACGAATTGAAACAAGAACCTTCTCAA
AATTTACCATATGATATCCAatcaacaaatataaaatacgAGAGACGTTC
ACCAAATATGCAATCTCCCTTCGAGAGGACCAACTCACCATATCGTTACC
CCTCACCACATAACAGTCAAAGAGCATCACCTAATCTGCAATCATCAACG
ACGATACTAACTTCCCCACCACCTTTAGTTCGAACAACGCCACCACCATC
AATGCCGCCACACACAACACCATACGTGGGCGGTGCATCGAATGTAGCAT
CAGTGAGATACAGGAGCTTTAAGCAACCCAATAGTTTTGATTCCACATCA
GCTAGCATTGATTCATCTCTTAGTGGAAGCGATGAAGAGGAAAACGACTC
AATGGTTTTGATGAAGCCAAGACCAACTCCAAGTAGAGTAGTCGaacGTG
CAAAGTATGAACGTACAAAATACGAACGCACAATAAAGTTGTACAAATTT
TTGATCGACTTATTAGAAGACCAACACCCATGTGTCATGTGGAtcgatcg
gaaaatcgggatcTTCAAAATCACCGATTCGGAACAATTAGCCCAATTAT
GGGGTGAAGTCAAACTTAATGCTTCGATGACGTATGAAAAACTTGCCCGC
TCTTTCAGACATTATTACAAGAAAGGAATCTTAGATAGCGGAGAAACTGT
CATTTCACCGGTATCGAAAAATGGTAAACGCAAACTGTACTATAAATTCA
GTGCAGTCACCTTAAAGCGTTTTTTAGATATTGATCCTGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018052-exon-sc0000284-1491911889:300099..301424 | TCONS_00018052-exon-sc0000284-1491911889:300099..301424 | Clytia hemisphaerica | exon |
| TCONS_00018052-exon-sc0000284-1510915933:300099..301424 | TCONS_00018052-exon-sc0000284-1510915933:300099..301424 | Clytia hemisphaerica | exon |
| TCONS_00018052-exon-sc0000284-1575043694:300099..301424 | TCONS_00018052-exon-sc0000284-1575043694:300099..301424 | Clytia hemisphaerica | exon |
| TCONS_00018052-exon-sc0000284-1491911889:303395..304006 | TCONS_00018052-exon-sc0000284-1491911889:303395..304006 | Clytia hemisphaerica | exon |
| TCONS_00018052-exon-sc0000284-1510915933:303395..304006 | TCONS_00018052-exon-sc0000284-1510915933:303395..304006 | Clytia hemisphaerica | exon |
| TCONS_00018052-exon-sc0000284-1575043694:303395..304006 | TCONS_00018052-exon-sc0000284-1575043694:303395..304006 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000284 | supercontig | sc0000284:300099..304006 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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