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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018064 ID=TCONS_00018064|Name=TCONS_00018064|organism=Clytia hemisphaerica|type=transcript|length=7013bpRun BLAST on NCBI transcript from alignment at sc0000284:201821..223279- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018064 ID=TCONS_00018064|Name=TCONS_00018064|organism=Clytia hemisphaerica|type=transcript|length=21459bp|location=Sequence derived from alignment at sc0000284:201821..223279- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018064 vs. Swiss-Prot (Human)
Match: FREM2 (FRAS1-related extracellular matrix protein 2 OS=Homo sapiens GN=FREM2 PE=1 SV=2) HSP 1 Score: 842.417 bits (2175), Expect = 0.000e+0 Identity = 488/1253 (38.95%), Postives = 712/1253 (56.82%), Query Frame = 2
Query: 2345 RLIXSRVCIHQKQFTVQETDLKANLKFKRFGNLQTSAFATMVIKQEFDTDNKAFV-ESEKVVHWKSGKDIASTSLQLIDDVFYDNMRTVSVTLKDGVNTLIGDGCNMTVSITDPEDEPIVSMVGSEFKINESIGVLKILLQRKGDAKKLTKVYCITESDSARGTSGYAVTSYHDYISRFDEEEPSIVTFEEGEVEKICEIKIIDDTTYEIDEEFKVFLKPLFGSLINETQSDGVVTILNDPKDELEFSLEKTEYKVSEDIGFIRLNVKRTGLDRSFKSYVQIMTKEHVPVSAKSNDDYKGIFKTLEFGVGVTSIQVNLQIYDDEYRPKMEGEESFNVELRNPRNGRLSTTHSKAIVTIHDLENDVPKVGFEKDEYEFDENAGVIKIPIQREGDLSQEVSVLCYTRQSSARVVDDFDERPKSYTSMIKFKRFEKTKYCKVKLVDDNVYEKDEIFYIWLDRVYYN-----VXXXXXXXXXXXXKDNDKPQVFFSEKKYYFYEPSKEEKESIVYVTVERDGDVTKPTSVSLETNDGSAISGRHYEPFARMLKFDAGISRLSVPIKLYHSKKVNVRLAFTLLLKRHPDD-ALSLIRERKAIVSIEERRVRSDVTFPLNPVVVSLTDYADVSKAKK--EAVNGYPLICVTACDTHFPMYDKTNAICNQERIINNMTVYRWQIQS----DDVIGGYRDISLPVFFTKTSTITLDSIYFTAKSRVRCIARAYSLDGGLGLESKSQVIGISEKEGICKPRNTARLAENTFSAQVSYTGNDDPHHKNMIKLSVLIPHYDGLLPVVSTKRPSNFDLILSADPSRYKQHTCSNLLNENEVTTKNGFLSSSIQRN--IFSSHPFEFDKRLRSANSVKFYENLNLDSCLWTFESYYDMNELVTLCGGNIVSEGLVANSVQSNLVLNIPLFVSYLY--PSKSGRFIEYNHESSFRLTAVYDTGALWSDGVG-LASGKLEGSLYPASIIVLNKDNRLLFKFKTKTAFRGVFIKETEDGERKSSIQSRDQPLLTFTLRHIKSEETFNEPIQEWEMTSDMAVRDYSGMYIFNLIPCVVQTDIDFSWPPQCVPQEEVTFEVPLSIHQTSKPVETSFTLNTR-FIVAKEDQTTMENEL----PDNVAFDEGDNIFGRVL---VSNDEKAYRVKIEKVLLCAGQDGYIPIFNPDNKEFGCLVDTNRLMYRLQILNRVNPGHETREFGRVPFKAAFT---------KKKGASDGFKMDSTPLFKAGNGRTWYLH 5998
RL + + ++ + V E ++ KR G L ++F ++ + +K F +++K V + G+ A+ ++++ D ++ T V L + V + TV I DP DEP V + S++ + E +G L I ++R GD + V C T+ +A GT +V SY DYISR E+ S+V F++ E EK+C I IIDD+ YE +E F V L G I VTI+ D DE F EY V E G++ + V RTG D S S V + +++ P SA + DY GI + L+F GV V + I DD +P +EG E F + LR P N L SKA V+I+D +D+PK+ F++ Y E+ G I I R GD+ SV CYTRQ SA+V+ DF+ERP + TS+I F E K C ++L+DD +YE+ E + L N N I D DK + F E K+ EP + + ++ + V R GD +K + V + T DGSA SG Y P + ++F G ++ V I++ +R AFT+ LK PD+ ++ ++ KAIV IEE +DVTFP P +VSL Y D SKAK+ E ++GYP+IC+TAC+ + YDKT +IC E I + +T YRW I + D V R++ FFT + +TLDSIYF SRV+C ARA + +G GLE S ++ IS +EG+C+PR + FSA++ YTG +D + N+IKL+V +PH DG+LPV+ST+ SNF+L LS D +R H CSNLL+ EV T GFL+ + + I ++P+++ +R + +++FY NLNL++CLW F SYYDM+EL+ CGG I ++G V N VQS + L +PL+VSY++ P G + ++ +S RLT VYDT LW+DG+G +L+GSLYP S+ + + RL FKT+ F G+F+ S I S D P LTF+LR I+SE T+N+P+Q+W SD AVRDYSG Y L+PC + ++ P C P+E VTF++ + Q S PV F+LNT+ ++++K+ + + +VAF EGD I+GRV+ V N ++ IEKV LC G DGY+P ++P N E+GCL D+ L+YR +I+++ P + FG V F A + SDGFK+DSTPLF+ GR WY+H
Sbjct: 1765 RLNWAWISFEKEYYLVNEDSKFLDVVLKRRGYLGETSFISIGTRDRTAEKDKDFKGKAQKQVQFNPGQTRATWRVRILSDGEHEQSETFQVVLSEPVLAALEFPTVATVEIVDPGDEPTVFIPQSKYSVEEDVGELFIPIRRSGDVSQELMVVCYTQQGTATGTVPTSVLSYSDYISR-PEDHTSVVRFDKDEREKLCRIVIIDDSLYEEEETFHVLLSMPMGGRIGSEFPGAQVTIVPDKDDEPIFYFGDVEYSVDESAGYVEVQVWRTGTDLSKSSSVTVRSRKTDPPSADAGTDYVGISRNLDFAPGVNMQPVRVVILDDLGQPALEGIEKFELVLRMPMNAALGEP-SKATVSINDSVSDLPKMQFKERIYTGSESDGQIVTMIHRTGDVQYRSSVRCYTRQGSAQVMMDFEERPNTDTSIITFLPGETEKPCILELMDDVLYEEVEELRLVLGTPQSNSPFGAAVGEQNETLIRIRDDADKTVIKFGETKFSVTEPKEPGESVVIRIPVIRQGDTSKVSIVRVHTKDGSATSGEDYHPVSEEIEFKEGETQHVVEIEVTFDGVREMREAFTVHLK--PDENMIAEMQLTKAIVYIEEMSSMADVTFPSVPQIVSLLMYDDTSKAKESAEPMSGYPVICITACNPKYSDYDKTGSICASENINDTLTRYRWLISAPAGPDGVTSPMREVDFDTFFTSSKMVTLDSIYFQPGSRVQCAARAVNTNGDEGLELMSPIVTISREEGLCQPRVPGVVGAEPFSAKLRYTGPEDADYTNLIKLTVTMPHIDGMLPVISTRELSNFELTLSPDGTRVGNHKCSNLLDYTEVKTHYGFLTDATKNPEIIGETYPYQYSLSIRGSTTLRFYRNLNLEACLWEFVSYYDMSELLADCGGTIGTDGQVLNLVQSYVTLRVPLYVSYVFHSPVGVGGWQHFDLKSELRLTFVYDTAILWNDGIGSPPEAELQGSLYPTSMRI-GDEGRLAVHFKTEAQFHGLFVLSHPASFTSSVIMSADHPGLTFSLRLIRSEPTYNQPVQQWSFVSDFAVRDYSGTYTVKLVPCTAPSHQEYRLPVTCNPREPVTFDLDIRFQQVSDPVAAEFSLNTQMYLLSKKSLWLSDGSMGFGQESDVAFAEGDIIYGRVMVDPVQNLGDSFYCSIEKVFLCTGADGYVPKYSPMNAEYGCLADSPSLLYRFKIVDKAQPETQATSFGNVLFNAKLAVDDPEAILLVNQPGSDGFKVDSTPLFQVALGREWYIH 3012 HSP 2 Score: 523.472 bits (1347), Expect = 4.116e-150 Identity = 307/786 (39.06%), Postives = 458/786 (58.27%), Query Frame = 1
Query: 1 FTLEDIASGQIAYHHTDGEVGTQKLQDLINLNIPQNDQDIFIGGQLYSGLTLTVDIAPVNSQPPKI-DGPLLIEVVESKKSIL---KINISDSDTSPENINCNVTELPLFGFIENLTPLDGSEIQRPNIPVEKFRVSDLNQGRVSYVQSKHNKIEPDMDSFNLRCFDGNNTSSEVKVHVSIAPINDEPPVLFIQSQIVCIEDDLIIFDLSKINPFDRDRPTDELVFFVTKQPINGELLLQ--NNSALNPATDFGYEVLSGDTDITLIYQHKGTETTKDQFELSVFDGVHTTEGVVNITIIPMDDEQPRLVVNTGLRIDRGQSKTITTSNLKAQDLDSEDSQLMYIVMMESISGKLQKLNTSQLYTDLVKGNNFTQTDIDKKRIRYTHLNMKSEDRDLIRLDVTDGFNRLINQXXXXXXXXXXXXXXXXXXKGLRLLENSRAILTTDVLSASDINTPDENLQFIVTRLPLKGFLEHSDRSGIPLTRFTQLDLAANKISYLHTSLDEIKADNFEFEVTDGQNKVFRTFRIHIDSVDNKLPVLQKSIVYTGQGQEKIITPFELNAYDNDTKLNNVIFQIHRPPRHGVIYLDGITRTFRFTQQDITENRLSYQHDGSMGTIDSFTVAAGDGVNEGYYLKGSKRIQ-KRPITVQIEITAIDKNAPVIVTNKLITSLR-VRRKKIFTKLSINVLEAVDSHSESNSIIFNITGHPKEGKLINVKNKGVIITQFSQDDVNNRIIEYLLNGSSSATNDIFFFDVLDGNGNALRGQNLKLKWSRVCIHQEQFTVQE 2334
FT DI G + Y HT GE+G D NL++ Q+ IGG G+T+ V I PV+SQ P+I G LI V+E KS++ I+ D D+ ++I C + P G++EN++P GSE R I + F + DL QG ++YVQS H +EP D F RC DG N S + I P NDE P +F++ + + +E ++ D +N D D P D+L F +T+ P +G ++ Q N + L + + S ++IY+H +ET +D F + + DG H+ E V I +IP+DDE PR+ +N GL I+ G +K I L A DLDSED L+YI+ G LQ+ + + ++ G NFTQ ++D+ I+Y HL + RDLI+ DVTDG N LI++ F + I D + P V++KG+ L E + LTTD+LS SD+N+PDENL F +TR P++G LE +D+ G+ +T FTQL LA NKI Y+HT+ DE+K D+FEF+VTDG+N VFRTFRI I VDNK PV+ + + + K+ITPFEL D DT + F I + P HG + + FT+QD+ EN +SY+HDG+ + DSF+ DG + +Y+ + +RP ++I++ A+D + P I NK ++LR + + ++ +L+ D S S+ F +T P+ G L+N+ ITQF+Q D+++ I Y+L ++AT+D+F+F V DG GN L QN +L W+ + +E + V E
Sbjct: 1004 FTQRDILEGSVVYTHTSGEIGLLPKADSFNLSLSDMSQEWRIGGNTIQGVTIWVTILPVDSQAPEIFVGEQLI-VMEGDKSVITSVHISAEDVDSLNDDILCTIVIQPTSGYVENISPAPGSEKSRAGIAISAFNLKDLRQGHINYVQSVHKGVEPVEDRFVFRCSDGINFSERQFFPIVIIPTNDEQPEMFMR-EFMVMEGMSLVIDTPILNAADADVPLDDLTFTITQFPTHGHIMNQLINGTVLVESFTLDQIIESS----SIIYEHDDSETQEDSFVIKLTDGKHSVEKTVLIIVIPVDDETPRMTINNGLEIEIGDTKIINNKILMATDLDSEDKSLVYIIRYGPGHGLLQRRKPTGAFENITLGMNFTQDEVDRNLIQYVHLGQEG-IRDLIKFDVTDGINPLIDRYFYVSIGSIDIVFPDVISKGVSLKEGGKVTLTTDLLSTSDLNSPDENLVFTITRAPMRGHLECTDQPGVSITSFTQLQLAGNKIYYIHTADDEVKMDSFEFQVTDGRNPVFRTFRISISDVDNKKPVVTIHKLVVSESENKLITPFELTVEDRDTPDKLLKFTITQVPIHGHLLFNNTRPVMVFTKQDLNENLISYKHDGTESSEDSFSFTVTDGTHTDFYVFPDTVFETRRPQVMKIQVLAVDNSVPQIAVNKGASTLRTLATGHLGFMITSKILKVEDRDSLHISLRFIVTEAPQHGYLLNLDKGNHSITQFTQADIDDMKICYVLREGANATSDMFYFAVEDGGGNKLTYQNFRLNWAWISFEKEYYLVNE 1782 HSP 3 Score: 103.605 bits (257), Expect = 1.426e-21 Identity = 192/829 (23.16%), Postives = 338/829 (40.77%), Query Frame = 1
Query: 1 FTLEDIASGQIAYHHTDGEVGTQKLQDLINLNIPQNDQDIFIGGQLYSGLTLTVDIAPVNSQPPKIDGPLLIEVVESKK-SILKINISDSDT-SPENINCNVTELPLFG-----------------FIENLTPLDGSEIQRPNIPVEKFRVSDLNQGRVSYVQSKHNKIEPDMDSFNLRCFDGN---NTSSEVKVHVSIAPINDEPPVLF--IQSQIVCIEDDLIIFDLSKINPFDRDRPTDELVFFVTKQPIN----------GELLLQNNSALNPATDFGYEVLSGDTDITLIYQHKGTE----TTKDQFELSVFDGV-HTTEGVVNITIIPMDDEQPRLVVNTGLRIDRGQSKTITTSNLKAQDLDSEDSQLMYIVMMESISGKLQKLNTSQLYTDLVKGNNFTQTDIDKKRIRYTHLNMKSEDRDLIRLDVTDGFNRL-----INQXXXXXXXXXXXXXXXXXXKGLRLLENSRAILTTDVLSASDINTPDENLQFIVTRLPLKGFLEHSDRSGIPLTRFTQLDLAANKISYLHTSLDEI----KADNFEFEVTD-------GQNKV-FRTFRIHIDSVDNKLP---VLQKSIVYTGQGQEKIITPFELNAYDNDTKLNNVIFQIHRPPRHGVIYLDGITRT------------FRFTQQDITENRLSY---QHDGSMGTIDSFTVAAGDGVNEGYYLKGSKRIQKRPITVQIEITAIDKNAPVIVTNKLITSLRVRRKKIFTKLSI----NVLEAVDSHSESNSIIFNITGHPKEGKLIN-VKNKGVIITQFSQDDVNNRIIEYLLNGSSSATNDIFFFDVLDG 2250
FT+ ++A+GQ+ Y H D + L D + L + GG+ + + PV+ QPP ++ + + E + IL +++S +D S +++ V E P + L +G+ +R V +++ D+ +GR+ Y S + P D F R D + N S + + I P++ PP L ++V E L + D D EL + VT+ P + G L+L +N ++ T F ++ + Y+ G E T QF+ V D + G + + P+D+ QP ++NTG I ++ + L D+D++ + + + + G ++ + Q+ L G F DI + R+ Y H KS D L+V+D + + +N P + + L +LEN +T +V+ ++ T D L F++ PL G + +GIP +FTQ D+ + Y HTS EI KAD+F ++D G N + T + I VD++ P V ++ IV +G + +IT ++A D D+ ++++ I P G Y++ I+ F +D+ + ++Y H G D F DG+N S+R Q PI +I TN + +R + +S+ +L A D+ + + F IT P G ++N + N V++ F+ D + + S D F + DG
Sbjct: 507 FTVAELAAGQVVYQHDDRD---GSLSDNLVLRMVDG------GGRHQVQFLFPITLVPVDDQPPVLNANTGLTLAEGETVPILPLSLSATDMDSDDSLLLFVLESPFLTTGHLLLRQTHPPHEKQELLRGLWRKEGAFYERT---VTEWQQQDITEGRLFYRHSGPHSPGPVTDQFTFRVQDNHDPPNQSGLQRFVIRIHPVDRLPPELGSGCPLRMVVQESQLTPLRKKWLRYTDLDTDDRELRYTVTQSPTDTDENHLPAPLGTLVLTDNPSVV-VTHFTQAQINHHK---IAYRPPGQELGVATRVAQFQFQVEDRAGNVAPGTFTLYLHPVDN-QPPEILNTGFTIQEKGHHILSETELHVNDVDTDVAHISFTLTQAPKHGHMRV--SGQI---LHVGGLFHLEDIKQGRVSYAHNGDKSL-TDSCSLEVSDRHHVVPITLRVNVRPVDDEVPILSHPTGTLESYLDVLENGATEITANVIKGTNEETDDLMLTFLLEDPPLYGEIL---VNGIPAEQFTQRDILEGSVVYTHTS-GEIGLLPKADSFNLSLSDMSQEWRIGGNTIQGVTIWVTILPVDSQAPEIFVGEQLIVM--EGDKSVITSVHISAEDVDSLNDDILCTIVIQPTSG--YVENISPAPGSEKSRAGIAISAFNLKDLRQGHINYVQSVHKGVEPVEDRFVFRCSDGIN------FSER-QFFPIV-------------IIPTNDEQPEMFMREFMVMEGMSLVIDTPILNAADADVPLDDLTFTITQFPTHGHIMNQLINGTVLVESFTLDQIIESSSIIYEHDDSETQEDSFVIKLTDG 1284 The following BLAST results are available for this feature:
BLAST of TCONS_00018064 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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