TCONS_00018086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018086
Unique NameTCONS_00018086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018086 ID=TCONS_00018086|Name=TCONS_00018086|organism=Clytia hemisphaerica|type=transcript|length=605bp
GAATCATCAACCAATCAAGACAAGACAAGAAAAGAAACTTGAATAAAACA
AATTGAAGaaaaatgaaGACAATCATTCTTATTGCACTTCTTCCGCTGTT
GGCCAATGAAGCTTTTGGATTCCTCAAGTTTGGTCCCTGGAATTGTCGTA
ATTTAGCCTGCTTCTTGAAAGAGGGCCAGACAATCCATAGCAGAACGCTC
AAAACTTGGAAATACCGCACATGTGGCTCCATTGGTGGCCTCTCGTGTTC
GGCCGCTAACGACCGCGTCGCAAGTCGTTGCCAAACGGATTTAAACAATG
GTGGTATCCAGTTACAAGTTTGCAATGCGAAGAAAGCAAATGTCCCAAAT
TGGCCGAATAAATTGACCGTTTGGGTTACCAAAATGGGGAAGGCTGATTG
TATGTCAAATAACGCTAACAACTTTTGGATGGATAAGGATCATCATGGCG
TTCCAAAAAAGCGCGCTGTTTGCTGCACAAAGTACTCCCCATTGCCTTGG
TTACCAGCTAAAATTTACAATCTTCCATGCTAAGGAGTTTTAATTGTAAT
TTTAATACGGGAAAACAATTGAAATACATAAATGAATTCTTAAAATACAA
Gaaac
Run BLAST on NCBI

protein sequence of TCONS_00018086-protein

>TCONS_00018086-protein ID=TCONS_00018086-protein|Name=TCONS_00018086-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MKTIILIALLPLLANEAFGFLKFGPWNCRNLACFLKEGQTIHSRTLKTWK
YRTCGSIGGLSCSAANDRVASRCQTDLNNGGIQLQVCNAKKANVPNWPNK
LTVWVTKMGKADCMSNNANNFWMDKDHHGVPKKRAVCCTKYSPLPWLPAK
IYNLPC
Run BLAST on NCBI

transcript from alignment at sc0000287:96785..98000+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018086 ID=TCONS_00018086|Name=TCONS_00018086|organism=Clytia hemisphaerica|type=transcript|length=1216bp|location=Sequence derived from alignment at sc0000287:96785..98000+ (Clytia hemisphaerica)
GAATCATCAACCAATCAAGACAAGACAAGAAAAGAAACTTGAATAAAACA
AATTGAAGGtaacttttccatttttcaacttttttttattttacatacCG
AATCCTTCCTCTGATCAttaattgaaccatgcttataTAACAACCAGTAG
ATTTAGCCTCTTTCAGATCTGAAAGATTTATTATCTTGAATCTTTCCCCT
ACAAAATGGAGGCTTTCTAAAGGGACTAGAtacacccccttttcacagac
ccgttaggattttttcagccagtggggatagaaataacAGACTGAAAATC
GACGGGGATTGATATCCCGTATCTTATATGGCcggggatttcaatttttt
tgtttttaaattagaaaattcagTGGCGATGGGAAGAAAAGCATCATGTT
TTGCAGTCAGgactgtttttttattatttcagtgggaacaaaaattggag
gataattttccgaCGGGGACGAGATTGTGGACAATTTTTCCTGTGGGAAG
GATTTCCACTGGGTGTGTGGGAAGGGAGTGTCTAAATCTACCCTAAATCT
ACCTTGTTTTGAGCACCTATATACTTGCTACCAAATATTGACGTGCAATC
ACTTTTTTAAATCCTTTTCTTACTACCTGAATCACTTTGTGAGCCGTTTA
ACTACCCTttgtttttcagaaaaatgaaGACAATCATTCTTATTGCACTT
CTTCCGCTGTTGGCCAATGAAGCTTTTGGATTCCTCAAGTTTGGTCCCTG
GAATTGTCGTAATTTAGCCTGCTTCTTGAAAGAGGGCCAGACAATCCATA
GCAGAACGCTCAAAACTTGGAAATACCGCACATGTGGCTCCATTGGTGGC
CTCTCGTGTTCGGCCGCTAACGACCGCGTCGCAAGTCGTTGCCAAACGGA
TTTAAACAATGGTGGTATCCAGTTACAAGTTTGCAATGCGAAGAAAGCAA
ATGTCCCAAATTGGCCGAATAAATTGACCGTTTGGGTTACCAAAATGGGG
AAGGCTGATTGTATGTCAAATAACGCTAACAACTTTTGGATGGATAAGGA
TCATCATGGCGTTCCAAAAAAGCGCGCTGTTTGCTGCACAAAGTACTCCC
CATTGCCTTGGTTACCAGCTAAAATTTACAATCTTCCATGCTAAGGAGTT
TTAATTGTAATTTTAATACGGGAAAACAATTGAAATACATAAATGAATTC
TTAAAATACAAGaaac

Coding sequence (CDS) from alignment at sc0000287:96785..98000+

>TCONS_00018086 ID=TCONS_00018086|Name=TCONS_00018086|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0000287:96785..98000+ (Clytia hemisphaerica)
atgaaGACAATCATTCTTATTGCACTTCTTCCGCTGTTGGCCAATGAAGC
TTTTGGATTCCTCAAGTTTGGTCCCTGGAATTGTCGTAATTTAGCCTGCT
TCTTGAAAGAGGGCCAGACAATCCATAGCAGAACGCTCAAAACTTGGAAA
TACCGCACATGTGGCTCCATTGGTGGCCTCTCGTGTTCGGCCGCTAACGA
CCGCGTCGCAAGTCGTTGCCAAACGGATTTAAACAATGGTGGTATCCAGT
TACAAGTTTGCAATGCGAAGAAAGCAAATGTCCCAAATTGGCCGAATAAA
TTGACCGTTTGGGTTACCAAAATGGGGAAGGCTGATTGTATGTCAAATAA
CGCTAACAACTTTTGGATGGATAAGGATCATCATGGCGTTCCAAAAAAGC
GCGCTGTTTGCTGCACAAAGTACTCCCCATTGCCTTGGTTACCAGCTAAA
ATTTACAATCTTCCATGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010144XLOC_010144Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018086-proteinTCONS_00018086-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018086-exon-sc0000287-1491911889:96785..96842TCONS_00018086-exon-sc0000287-1491911889:96785..96842Clytia hemisphaericaexon
TCONS_00018086-exon-sc0000287-1510915933:96785..96842TCONS_00018086-exon-sc0000287-1510915933:96785..96842Clytia hemisphaericaexon
TCONS_00018086-exon-sc0000287-1575043694:96785..96842TCONS_00018086-exon-sc0000287-1575043694:96785..96842Clytia hemisphaericaexon
TCONS_00018086-exon-sc0000287-1491911889:97454..98000TCONS_00018086-exon-sc0000287-1491911889:97454..98000Clytia hemisphaericaexon
TCONS_00018086-exon-sc0000287-1510915933:97454..98000TCONS_00018086-exon-sc0000287-1510915933:97454..98000Clytia hemisphaericaexon
TCONS_00018086-exon-sc0000287-1575043694:97454..98000TCONS_00018086-exon-sc0000287-1575043694:97454..98000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:96785..98000 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.531027	0.862659	10.4986	18.654	28.6642	3.55059	19.0961	56.03	0.101745	1.29549	219.854	92.2652	14.6902	111.15	1.00198	1.34752	8.74794	222.295	68.0326	226.076	11.8086	23.2348	16.0504	6.05416
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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