TCONS_00018112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018112
Unique NameTCONS_00018112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018112 ID=TCONS_00018112|Name=TCONS_00018112|organism=Clytia hemisphaerica|type=transcript|length=586bp
aagaaaacaaattggTAGAGTCGTTGAAAGCTGAAGAAGAGAATGATGAA
ATAATCGCAATTCATCTACctatattttatgaaaaagtaGATTATACAGA
TTTACGGTATCCATTAGCGGTTATCGGTAAGAATAAGACCATCAATATCG
TTGTTCGAAGCAGTGATACCATCGGTGACGATCCGATTATCCAAAATGGA
AATATAATAGCACAGGAGGACGATTATCTTAATCCTCTGTTTATTAAGGT
ACTTTTCGAGAGAATCAACTTTATTTTATGTGGATTGAATGGCAATTGAT
GTATTTTGATGTTGTTCAGAACTGCAAAGTCGGAGTTTTACGTAACTTTG
AAACTCGTCGGTCGTAAAGATTATGAAGGTAATCTCAGTTGTAAACATGG
AAATAATCAGCCGATAACACTCCTACTAAGGGTCCGAGTGACTAAATTCG
AACGCTAGATATACACGTCATCCAATCAAAATGTTACCTTTGCTGGTCTT
GTCGAGGTTGCGGGGAGTCTTACTGACCCTCATGCCCAAAGAAGCCAAAA
ACGCTAAAAAGAACTTTAACTTAATGTCGGGATGGG
Run BLAST on NCBI

transcript from alignment at sc0000287:139561..140146

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018112 ID=TCONS_00018112|Name=TCONS_00018112|organism=Clytia hemisphaerica|type=transcript|length=586bp|location=Sequence derived from alignment at sc0000287:139561..140146 (Clytia hemisphaerica)
CCCATCCCGACATTAAGTTAAAGTTCTTTTTAGCGTTTTTGGCTTCTTTG
GGCATGAGGGTCAGTAAGACTCCCCGCAACCTCGACAAGACCAGCAAAGG
TAACATTTTGATTGGATGACGTGTATATCTAGCGTTCGAATTTAGTCACT
CGGACCCTTAGTAGGAGTGTTATCGGCTGATTATTTCCATGTTTACAACT
GAGATTACCTTCATAATCTTTACGACCGACGAGTTTCAAAGTTACGTAAA
ACTCCGACTTTGCAGTTCTGAACAACATCAAAATACATCAATTGCCATTC
AATCCACATAAAATAAAGTTGATTCTCTCGAAAAGTACCTTAATAAACAG
AGGATTAAGATAATCGTCCTCCTGTGCTATTATATTTCCATTTTGGATAA
TCGGATCGTCACCGATGGTATCACTGCTTCGAACAACGATATTGATGGTC
TTATTCTTACCGATAACCGCTAATGGATACCGTAAATCTGTATAATCtac
tttttcataaaatatagGTAGATGAATTGCGATTATTTCATCATTCTCTT
CTTCAGCTTTCAACGACTCTAccaatttgttttctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010163XLOC_010163Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018112-exon-sc0000287-1491911889:139561..140146TCONS_00018112-exon-sc0000287-1491911889:139561..140146Clytia hemisphaericaexon
TCONS_00018112-exon-sc0000287-1510915933:139561..140146TCONS_00018112-exon-sc0000287-1510915933:139561..140146Clytia hemisphaericaexon
TCONS_00018112-exon-sc0000287-1575043694:139561..140146TCONS_00018112-exon-sc0000287-1575043694:139561..140146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:139561..140146 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0941054	0	0.106551	0	0	0	0.362962	0.566335	0.158602	0.491134	0.762731	0.814758	2.64611	2.40616	0.87089	0.959854	0.0706446	0.217225	2.6634	3.12429	0	0.13314	0	0.0980962	0	0.0901729	0.129037	0	0.10445	0.106418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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