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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018130 ID=TCONS_00018130|Name=TCONS_00018130|organism=Clytia hemisphaerica|type=transcript|length=2309bp
NNGTACCGGCATGCGAATTCTTGAGCATGCGCTATAAAAGGGAGAGATTA
GTAGACGTGTCATCTCATTGCAACGCAAAGGTCGTGTACTTAAGATGGCG
TCAGAAGGAAGTGCTGCAGAACAGAATCAAAATCTTGCTGCTCAGCTACA
GACAGCAATCACTCAGTTAGTGGACTTTAGGCAACAAACTCAAGACACAT
TAAATGGTTTTAAAGAGTATCAAAAGTCATCAATAGCAAAATTTAACAAT
AGGCTtgagagaaagagaaaaatggATGATGTGCAGTTTAAAAACATTGG
AAACGAAGACCAGTACAACCATGAGAAGCGAGTGATGGAAAGCATGGACG
ATATCGAAGAATCATTGAACGAAAACAAATTAGAGGATGCAAAGAAGGCC
TTGAAGTCTGAGAGATATTGGGAGCATGAGGAAACGGAACAGGTCTCAGT
TGCCGGAAAGATTCGAGAACAcgcaaaattttgggaattcgAGTTAAAAG
CACCGTCCTTCATCTTAGATATCGTCAAAAACGGGTACAGTTTGCCATTC
AAAAAGAACCCTcccccatcttattccaaaaataataAATCGAGTCTGAG
AGAGcacaaatttgtcaaaaattcgaTCGAGGAGCTTGTCAAAAACAAAT
GCATTCGTGAAGTCGATTTCATTCCTTATTGCGTCAACCCCCTTTCAGTA
GcagaaagaaattcaaaattgagaCTTGTTCTAGATCTTCGAAACGTTAA
CAAATATATTGACATTACAAAATTCAAATATGATAACATAAAAACTTTGT
CAGATCTAGTTAATCCTGGGGATTTAATGTTtacttttgatttaaaaagc
GGCTATCATCACGTGCCAATTAATGAAGATTTTCATAGATATCTTGGTtt
ttcttgggaattcaaggGCATTACAAAATATTTCGTTTTCGTGGTCCTTC
CTTTCGGTTTGTGTTCAGCCTGTTGGGTTTTTACGAAATTAATGCGCCAG
TTGGTTAAAAAATGGAGAGGCCAAGGTATGAAGTCGGTTATGTATCTCGA
CGACGGAGTTGCTTGTGGTTACCCAGAGTCAATGATCGTAAAACATCGGG
ACATAATGGCACATGACCTTAAGTCGGCTGGTCTGACAATAAACGTTAAG
AAATCTTCATTAGAGCCTGAAACAGAAAAAGAGTGGTTGGGTTTTAGAAT
CAAcacagaagagatgaaaattTATGTTCCCCTTCCAAAATTGGAAGCTG
TTCTACGTGTTATTGCCGAAATTCTGACATCCGATCTAGTGACTAcaaga
aaaatagcaaaattagcCGGGCGTATAATCGCCATGTCTATAGCAATAGG
ACCCTTGACAAGACTTTTCACACGCAAAATGTATAAATTCATCGACGACA
GGATTATGCTCGGCTTAGCCTGGGACAGTAATCGactaatttcaaaagaa
ttaaaatcagAACTCACTTTTTGGAAATCAAATCTATCTGCGTCAAATGG
CGTGGAATTCAACACTTCTCCCGTGATTACGAAAGTATGTTATAGTGATG
CTAGTGAATACGCATACGGTGGCTTCATCGTTGAAAGATTAGGTAACATA
ATCGCTCATGGAATTTTTCTATATCCGAATCAAATACGAGTTCAACTTAC
AGAGAGCTTCTTGCTGTTAAAAACGTTTTGACATCGtttgcaaaaaaagt
taagaaaagatATGGTTCAGTGGAATTCTGACAATCAAAACGTTACCAGA
ATAATCAATTCTGGAAGTACAAAAGATCATTTACAAAGGCTAGCAATTGA
CATTTATGGTTTATGCGTTAAGAACAGTATTCGACTTTATCCTCTTTGGA
TCCCTAGAGACCAAAACGAAATCGCtgatacaatttcaaaaagcaTCGAT
ACAGATAATTGGTGTATAGATAATGAGACATTTAATTATATCCAAAGCAA
CTACGGTACATTCACAATAGATAGATTTGCTGACAATAagaacacaaaaa
caaaaagatttaatTCAAAGAGCTTTTGTCCAGACACTGAAGAAGTTAAC
GCTTTCGTAAGCCACTGGGGAAACGACTTTAATTGGCTCTGTCCTCCTAT
TTATCTCATCGGAAAAACTATCAGTCATTTAAAATTGTGCAAAGCAAAAG
GAGTGTTATTCGTTCCAATGTGGAAATCTGCATATTTTTGGCCATTACTG
ACCTCTGATGGTACACATTTTAATAACTTTGTaagacattttttgctttt
ggatcctttcttttttaactATGCTAGAATTAAATCTGTTTTTGAAGGTT
TTGCAAAAT Run BLAST on NCBI protein sequence of TCONS_00018130-protein >TCONS_00018130-protein ID=TCONS_00018130-protein|Name=TCONS_00018130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=528bp
MASEGSAAEQNQNLAAQLQTAITQLVDFRQQTQDTLNGFKEYQKSSIAKF
NNRLERKRKMDDVQFKNIGNEDQYNHEKRVMESMDDIEESLNENKLEDAK
KALKSERYWEHEETEQVSVAGKIREHAKFWEFELKAPSFILDIVKNGYSL
PFKKNPPPSYSKNNKSSLREHKFVKNSIEELVKNKCIREVDFIPYCVNPL
SVAERNSKLRLVLDLRNVNKYIDITKFKYDNIKTLSDLVNPGDLMFTFDL
KSGYHHVPINEDFHRYLGFSWEFKGITKYFVFVVLPFGLCSACWVFTKLM
RQLVKKWRGQGMKSVMYLDDGVACGYPESMIVKHRDIMAHDLKSAGLTIN
VKKSSLEPETEKEWLGFRINTEEMKIYVPLPKLEAVLRVIAEILTSDLVT
TRKIAKLAGRIIAMSIAIGPLTRLFTRKMYKFIDDRIMLGLAWDSNRLIS
KELKSELTFWKSNLSASNGVEFNTSPVITKVCYSDASEYAYGGFIVERLG
NIIAHGIFLYPNQIRVQLTESFLLLKTF Run BLAST on NCBI transcript from alignment at sc0000290:359179..362050+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018130 ID=TCONS_00018130|Name=TCONS_00018130|organism=Clytia hemisphaerica|type=transcript|length=2872bp|location=Sequence derived from alignment at sc0000290:359179..362050+ (Clytia hemisphaerica)
NNGTACCGGCATGCGAATTCTTGAGCATGCGCTATAAAAGGGAGAGATTA
GTAGACGTGTCATCTCATTGCAACGCAAAGGTCGTGTACTTAAGATGGCG
TCAGAAGGAAGTGCTGCAGAACAGAATCAAAATCTTGCTGCTCAGCTACA
GACAGCAATCACTCAGTTAGTGGACTTTAGGCAACAAACTCAAGACACAT
TAAATGGTTTTAAAGAGTATCAAAAGTCATCAATAGCAAAATTTAACAAT
AGGCTtgagagaaagagaaaaatggATGATGTGCAGTTTAAAAACATTGG
AAACGAAGACCAGTACAACCATGAGAAGCGAGTGATGGAAAGCATGGACG
ATATCGAAGAATCATTGAACGAAAACAAATTAGAGGATGCAAAGAAGGCC
TTGAAGTCTGGTAAGGAAGCTATTGCATTCAGaatgaaattaattaaaat
tgcGGATAGAGAAGGTTGGGGATGCGTCAGACACTTCGTGTCTGATGACC
TAGTATCAGGGGACGAGGAAGAGAAACGGTTAAAGAAAGCTATCAAAGCT
AACTCGACTTCGAGAGACGCTAAGAAAACAAAATCTATTGCTTCATCATC
TAATAATCAAAACAGAGGCGAGTGTTCGAGTTATTCAAATCAATCTAACA
ATGTTTTTCACAGAAGAAAGATTGAGTCTATTCAATGCTATAACTGTAGA
TATTATGGACATTATTCTTATAATTGTCCATATCCATCCTCAAGGGACAA
CGTAAAAATTCCAAGAGCAGAAGAGAGTAAAGAGGAGGAAAATTAACAGT
ATAACGAGTCGTAAACGATTTAACGAGTttatcattttgaatatttgtgT
TATTTTATAATACTTTGTTAGAGCGACCACTGTGTCATGTACGTCGtgtt
atttttgaagataaccaTTTGCTATTCTATGATTTCAACTACCtccattt
tttctttcttccatTTGATTCAGAGAGATATTGGGAGCATGAGGAAACGG
AACAGGTCTCAGTTGCCGGAAAGATTCGAGAACAcgcaaaattttgggaa
ttcgAGTTAAAAGCACCGTCCTTCATCTTAGATATCGTCAAAAACGGGTA
CAGTTTGCCATTCAAAAAGAACCCTcccccatcttattccaaaaataata
AATCGAGTCTGAGAGAGcacaaatttgtcaaaaattcgaTCGAGGAGCTT
GTCAAAAACAAATGCATTCGTGAAGTCGATTTCATTCCTTATTGCGTCAA
CCCCCTTTCAGTAGcagaaagaaattcaaaattgagaCTTGTTCTAGATC
TTCGAAACGTTAACAAATATATTGACATTACAAAATTCAAATATGATAAC
ATAAAAACTTTGTCAGATCTAGTTAATCCTGGGGATTTAATGTTtacttt
tgatttaaaaagcGGCTATCATCACGTGCCAATTAATGAAGATTTTCATA
GATATCTTGGTttttcttgggaattcaaggGCATTACAAAATATTTCGTT
TTCGTGGTCCTTCCTTTCGGTTTGTGTTCAGCCTGTTGGGTTTTTACGAA
ATTAATGCGCCAGTTGGTTAAAAAATGGAGAGGCCAAGGTATGAAGTCGG
TTATGTATCTCGACGACGGAGTTGCTTGTGGTTACCCAGAGTCAATGATC
GTAAAACATCGGGACATAATGGCACATGACCTTAAGTCGGCTGGTCTGAC
AATAAACGTTAAGAAATCTTCATTAGAGCCTGAAACAGAAAAAGAGTGGT
TGGGTTTTAGAATCAAcacagaagagatgaaaattTATGTTCCCCTTCCA
AAATTGGAAGCTGTTCTACGTGTTATTGCCGAAATTCTGACATCCGATCT
AGTGACTAcaagaaaaatagcaaaattagcCGGGCGTATAATCGCCATGT
CTATAGCAATAGGACCCTTGACAAGACTTTTCACACGCAAAATGTATAAA
TTCATCGACGACAGGATTATGCTCGGCTTAGCCTGGGACAGTAATCGact
aatttcaaaagaattaaaatcagAACTCACTTTTTGGAAATCAAATCTAT
CTGCGTCAAATGGCGTGGAATTCAACACTTCTCCCGTGATTACGAAAGTA
TGTTATAGTGATGCTAGTGAATACGCATACGGTGGCTTCATCGTTGAAAG
ATTAGGTAACATAATCGCTCATGGAATTTTTCTATATCCGAATCAAATAC
GAGTTCAACTTACAGAGAGCTTCTTGCTGTTAAAAACGTTTTGACATCGt
ttgcaaaaaaagttaagaaaagatATGGTTCAGTGGAATTCTGACAATCA
AAACGTTACCAGAATAATCAATTCTGGAAGTACAAAAGATCATTTACAAA
GGCTAGCAATTGACATTTATGGTTTATGCGTTAAGAACAGTATTCGACTT
TATCCTCTTTGGATCCCTAGAGACCAAAACGAAATCGCtgatacaatttc
aaaaagcaTCGATACAGATAATTGGTGTATAGATAATGAGACATTTAATT
ATATCCAAAGCAACTACGGTACATTCACAATAGATAGATTTGCTGACAAT
AagaacacaaaaacaaaaagatttaatTCAAAGAGCTTTTGTCCAGACAC
TGAAGAAGTTAACGCTTTCGTAAGCCACTGGGGAAACGACTTTAATTGGC
TCTGTCCTCCTATTTATCTCATCGGAAAAACTATCAGTCATTTAAAATTG
TGCAAAGCAAAAGGAGTGTTATTCGTTCCAATGTGGAAATCTGCATATTT
TTGGCCATTACTGACCTCTGATGGTACACATTTTAATAACTTTGTaagac
attttttgcttttggatcctttcttttttaactATGCTAGAATTAAATCT
GTTTTTGAAGGTTTTGCAAAAT Coding sequence (CDS) from alignment at sc0000290:359179..362050+ >TCONS_00018130 ID=TCONS_00018130|Name=TCONS_00018130|organism=Clytia hemisphaerica|type=CDS|length=3174bp|location=Sequence derived from alignment at sc0000290:359179..362050+ (Clytia hemisphaerica)
ATGGCGTCAGAAGGAAGTGCTGCAGAACAGAATCAAAATCTTGCTGCTCA
GCTACAGACAGCAATCACTCAGTTAGTGGACTTTAGGCAACAAACTCAAG
ACACATTAAATGGTTTTAAAGAGTATCAAAAGTCATCAATAGCAAAATTT
AACAATAGGCTtgagagaaagagaaaaatggATGATGTGCAGTTTAAAAA
CATTGGAAACGAAGACCAGTACAACCATGAGAAGCGAGTGATGGAAAGCA
TGGACGATATCGAAGAATCATTGAACGAAAACAAATTAGAGGATGCAAAG
AAGGCCTTGAAGTCTGAGAGATATTGGGAGCATGAGGAAACGGAACAGGT
CTCAGTTGCCGGAAAGATTCGAGAACAcgcaaaattttgggaattcgAGT
TAAAAGCACCGTCCTTCATCTTAGATATCGTCAAAAACGGGTACAGTTTG
CCATTCAAAAAGAACCCTcccccatcttattccaaaaataataAATCGAG
TCTGAGAGAGcacaaatttgtcaaaaattcgaTCGAGGAGCTTGTCAAAA
ACAAATGCATTCGTGAAGTCGATTTCATTCCTTATTGCGTCAACCCCCTT
TCAGTAGcagaaagaaattcaaaattgagaCTTGTTCTAGATCTTCGAAA
CGTTAACAAATATATTGACATTACAAAATTCAAATATGATAACATAAAAA
CTTTGTCAGATCTAGTTAATCCTGGGGATTTAATGTTtacttttgattta
aaaagcGGCTATCATCACGTGCCAATTAATGAAGATTTTCATAGATATCT
TGGTttttcttgggaattcaaggGCATTACAAAATATTTCGTTTTCGTGG
TCCTTCCTTTCGGTTTGTGTTCAGCCTGTTGGGTTTTTACGAAATTAATG
CGCCAGTTGGTTAAAAAATGGAGAGGCCAAGGTATGAAGTCGGTTATGTA
TCTCGACGACGGAGTTGCTTGTGGTTACCCAGAGTCAATGATCGTAAAAC
ATCGGGACATAATGGCACATGACCTTAAGTCGGCTGGTCTGACAATAAAC
GTTAAGAAATCTTCATTAGAGCCTGAAACAGAAAAAGAGTGGTTGGGTTT
TAGAATCAAcacagaagagatgaaaattTATGTTCCCCTTCCAAAATTGG
AAGCTGTTCTACGTGTTATTGCCGAAATTCTGACATCCGATCTAGTGACT
AcaagaaaaatagcaaaattagcCGGGCGTATAATCGCCATGTCTATAGC
AATAGGACCCTTGACAAGACTTTTCACACGCAAAATGTATAAATTCATCG
ACGACAGGATTATGCTCGGCTTAGCCTGGGACAGTAATCGactaatttca
aaagaattaaaatcagAACTCACTTTTTGGAAATCAAATCTATCTGCGTC
AAATGGCGTGGAATTCAACACTTCTCCCGTGATTACGAAAGTATGTTATA
GTGATGCTAGTGAATACGCATACGGTGGCTTCATCGTTGAAAGATTAGGT
AACATAATCGCTCATGGAATTTTTCTATATCCGAATCAAATACGAGTTCA
ACTTACAGAGAGCTTCTTGCTGTTAAAAACGTTTTGAATGGCGTCAGAAG
GAAGTGCTGCAGAACAGAATCAAAATCTTGCTGCTCAGCTACAGACAGCA
ATCACTCAGTTAGTGGACTTTAGGCAACAAACTCAAGACACATTAAATGG
TTTTAAAGAGTATCAAAAGTCATCAATAGCAAAATTTAACAATAGGCTtg
agagaaagagaaaaatggATGATGTGCAGTTTAAAAACATTGGAAACGAA
GACCAGTACAACCATGAGAAGCGAGTGATGGAAAGCATGGACGATATCGA
AGAATCATTGAACGAAAACAAATTAGAGGATGCAAAGAAGGCCTTGAAGT
CTGAGAGATATTGGGAGCATGAGGAAACGGAACAGGTCTCAGTTGCCGGA
AAGATTCGAGAACAcgcaaaattttgggaattcgAGTTAAAAGCACCGTC
CTTCATCTTAGATATCGTCAAAAACGGGTACAGTTTGCCATTCAAAAAGA
ACCCTcccccatcttattccaaaaataataAATCGAGTCTGAGAGAGcac
aaatttgtcaaaaattcgaTCGAGGAGCTTGTCAAAAACAAATGCATTCG
TGAAGTCGATTTCATTCCTTATTGCGTCAACCCCCTTTCAGTAGcagaaa
gaaattcaaaattgagaCTTGTTCTAGATCTTCGAAACGTTAACAAATAT
ATTGACATTACAAAATTCAAATATGATAACATAAAAACTTTGTCAGATCT
AGTTAATCCTGGGGATTTAATGTTtacttttgatttaaaaagcGGCTATC
ATCACGTGCCAATTAATGAAGATTTTCATAGATATCTTGGTttttcttgg
gaattcaaggGCATTACAAAATATTTCGTTTTCGTGGTCCTTCCTTTCGG
TTTGTGTTCAGCCTGTTGGGTTTTTACGAAATTAATGCGCCAGTTGGTTA
AAAAATGGAGAGGCCAAGGTATGAAGTCGGTTATGTATCTCGACGACGGA
GTTGCTTGTGGTTACCCAGAGTCAATGATCGTAAAACATCGGGACATAAT
GGCACATGACCTTAAGTCGGCTGGTCTGACAATAAACGTTAAGAAATCTT
CATTAGAGCCTGAAACAGAAAAAGAGTGGTTGGGTTTTAGAATCAAcaca
gaagagatgaaaattTATGTTCCCCTTCCAAAATTGGAAGCTGTTCTACG
TGTTATTGCCGAAATTCTGACATCCGATCTAGTGACTAcaagaaaaatag
caaaattagcCGGGCGTATAATCGCCATGTCTATAGCAATAGGACCCTTG
ACAAGACTTTTCACACGCAAAATGTATAAATTCATCGACGACAGGATTAT
GCTCGGCTTAGCCTGGGACAGTAATCGactaatttcaaaagaattaaaat
cagAACTCACTTTTTGGAAATCAAATCTATCTGCGTCAAATGGCGTGGAA
TTCAACACTTCTCCCGTGATTACGAAAGTATGTTATAGTGATGCTAGTGA
ATACGCATACGGTGGCTTCATCGTTGAAAGATTAGGTAACATAATCGCTC
ATGGAATTTTTCTATATCCGAATCAAATACGAGTTCAACTTACAGAGAGC
TTCTTGCTGTTAAAAACGTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018130-exon-sc0000290-1491911889:359179..359588 | TCONS_00018130-exon-sc0000290-1491911889:359179..359588 | Clytia hemisphaerica | exon |
| TCONS_00018130-exon-sc0000290-1510915933:359179..359588 | TCONS_00018130-exon-sc0000290-1510915933:359179..359588 | Clytia hemisphaerica | exon |
| TCONS_00018130-exon-sc0000290-1575043694:359179..359588 | TCONS_00018130-exon-sc0000290-1575043694:359179..359588 | Clytia hemisphaerica | exon |
| TCONS_00018130-exon-sc0000290-1491911889:360152..362050 | TCONS_00018130-exon-sc0000290-1491911889:360152..362050 | Clytia hemisphaerica | exon |
| TCONS_00018130-exon-sc0000290-1510915933:360152..362050 | TCONS_00018130-exon-sc0000290-1510915933:360152..362050 | Clytia hemisphaerica | exon |
| TCONS_00018130-exon-sc0000290-1575043694:360152..362050 | TCONS_00018130-exon-sc0000290-1575043694:360152..362050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000290 | supercontig | sc0000290:359179..362050 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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