TCONS_00018174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018174
Unique NameTCONS_00018174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1173

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018174 ID=TCONS_00018174|Name=TCONS_00018174|organism=Clytia hemisphaerica|type=transcript|length=1173bp
AATATGAACAAAATATTACAAGGATTGTACTGCATATCGAAAACGGGGGT
TTGGAATGCGACGGGAGCAACGACGACGAATTAATTTAAGAGCGAGCGTG
TAGGCAAAGAAAGAGAGAGAGCTAAGGAGCTTCATATTTAGTAATTTTCT
CACGATTGTACAAGTTAATCACTACGGTAATCAAATTGCTGTCATCATCA
TTAAGAGTTAGGCACTTTAATTAGATTTTGTATAAACGAGCTGATTAAGT
AAACAAGCCTCCCCCGACAGAAAGTTGCGCAACCCTGtttacttttgcaa
atcaagCCGCGAATTGtgtaaattcaaaaattttagttgGTGGTGTCAGG
TTCAaggaaatcaaaacaaaaacatatcTAATAGAAGAGTTTTTAAAGGA
AAGTAACTCCACACACAAACACGCAAATTACATTACAATTGTACTGTACG
AAGCGGAAAATGGAGCAGGCCTGAAGCATTTTCCCGTCCTTCAACATAAA
AGTTTCCAAGACTTTTATGTCAAATtatagaaacattaaaaaaactGTAA
GATCATAAGTACGCGATGATAACACTCACGCTATCAATATCTCATTTGAC
CAAACACAAAGGGCGCGTTCGAAAGCGATAAGTCCGGAACGAGTTGATCA
AATTTCGTGCGGCCAAGGCGAGAAGCAGAGGTAGCACCTATCGTATCAAA
GTCTAAATTAAACCACGGATGGTCTGCCAACTCCTCAGCTGTTAAACGTT
CAGTTGGCGGTTTCCGTAATATCGAATGAATCAAACAGCTTGCGGAAGCG
GAAAGCGTTTCCGGAACAATGAAAAGTCCACTTTTGATTTTAACGAATAA
GGCAGTCGGGTCATGATCGTGGAATGGGTAACGCCCCGTTAATAACGTGT
AGATAATAACACCAAGGCTCCAAACGTCAGCAGCTTTTGACGAGTAACCT
ACTGTTGATTCAAGAATTTCCGGACTGACATAAGCCGGACACCCATGTTT
ATCGTGAAGAATGTCCGTAGAATCTTTGTCAACGATGTGAGCGGAATCGA
GCGTTTCCAACTTCAGGCGTGTTCTGGAAAATCGAAATGTGAAAGCAGGT
TTTAAACAGTTCAGATAATCTCCGAGAAGATTCTGATCACTTCGCGCATG
GCACGTATCAACTCTACAGACTC
Run BLAST on NCBI

protein sequence of TCONS_00018174-protein

>TCONS_00018174-protein ID=TCONS_00018174-protein|Name=TCONS_00018174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
VCRVDTCHARSDQNLLGDYLNCLKPAFTFRFSRTRLKLETLDSAHIVDKD
STDILHDKHGCPAYVSPEILESTVGYSSKAADVWSLGVIIYTLLTGRYPF
HDHDPTALFVKIKSGLFIVPETLSASASCLIHSILRKPPTERLTAEELAD
HPWFNLDFDTIGATSASRLGRTKFDQLVPDLSLSNAPFVFGQMRY
Run BLAST on NCBI

transcript from alignment at sc0000290:71052..72224

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018174 ID=TCONS_00018174|Name=TCONS_00018174|organism=Clytia hemisphaerica|type=transcript|length=1173bp|location=Sequence derived from alignment at sc0000290:71052..72224 (Clytia hemisphaerica)
GAGTCTGTAGAGTTGATACGTGCCATGCGCGAAGTGATCAGAATCTTCTC
GGAGATTATCTGAACTGTTTAAAACCTGCTTTCACATTTCGATTTTCCAG
AACACGCCTGAAGTTGGAAACGCTCGATTCCGCTCACATCGTTGACAAAG
ATTCTACGGACATTCTTCACGATAAACATGGGTGTCCGGCTTATGTCAGT
CCGGAAATTCTTGAATCAACAGTAGGTTACTCGTCAAAAGCTGCTGACGT
TTGGAGCCTTGGTGTTATTATCTACACGTTATTAACGGGGCGTTACCCAT
TCCACGATCATGACCCGACTGCCTTATTCGTTAAAATCAAAAGTGGACTT
TTCATTGTTCCGGAAACGCTTTCCGCTTCCGCAAGCTGTTTGATTCATTC
GATATTACGGAAACCGCCAACTGAACGTTTAACAGCTGAGGAGTTGGCAG
ACCATCCGTGGTTTAATTTAGACTTTGATACGATAGGTGCTACCTCTGCT
TCTCGCCTTGGCCGCACGAAATTTGATCAACTCGTTCCGGACTTATCGCT
TTCGAACGCGCCCTTTGTGTTTGGTCAAATGAGATATTGATAGCGTGAGT
GTTATCATCGCGTACTTATGATCTTACagtttttttaatgtttctataAT
TTGACATAAAAGTCTTGGAAACTTTTATGTTGAAGGACGGGAAAATGCTT
CAGGCCTGCTCCATTTTCCGCTTCGTACAGTACAATTGTAATGTAATTTG
CGTGTTTGTGTGTGGAGTTACTTTCCTTTAAAAACTCTTCTATTAgatat
gtttttgttttgatttcctTGAACCTGACACCACcaactaaaatttttga
atttacaCAATTCGCGGcttgatttgcaaaagtaaaCAGGGTTGCGCAAC
TTTCTGTCGGGGGAGGCTTGTTTACTTAATCAGCTCGTTTATACAAAATC
TAATTAAAGTGCCTAACTCTTAATGATGATGACAGCAATTTGATTACCGT
AGTGATTAACTTGTACAATCGTGAGAAAATTACTAAATATGAAGCTCCTT
AGCTCTCTCTCTTTCTTTGCCTACACGCTCGCTCTTAAATTAATTCGTCG
TCGTTGCTCCCGTCGCATTCCAAACCCCCGTTTTCGATATGCAGTACAAT
CCTTGTAATATTTTGTTCATATT

Coding sequence (CDS) from alignment at sc0000290:71052..72224

>TCONS_00018174 ID=TCONS_00018174|Name=TCONS_00018174|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0000290:71052..72224 (Clytia hemisphaerica)
GTCTGTAGAGTTGATACGTGCCATGCGCGAAGTGATCAGAATCTTCTCGG
AGATTATCTGAACTGTTTAAAACCTGCTTTCACATTTCGATTTTCCAGAA
CACGCCTGAAGTTGGAAACGCTCGATTCCGCTCACATCGTTGACAAAGAT
TCTACGGACATTCTTCACGATAAACATGGGTGTCCGGCTTATGTCAGTCC
GGAAATTCTTGAATCAACAGTAGGTTACTCGTCAAAAGCTGCTGACGTTT
GGAGCCTTGGTGTTATTATCTACACGTTATTAACGGGGCGTTACCCATTC
CACGATCATGACCCGACTGCCTTATTCGTTAAAATCAAAAGTGGACTTTT
CATTGTTCCGGAAACGCTTTCCGCTTCCGCAAGCTGTTTGATTCATTCGA
TATTACGGAAACCGCCAACTGAACGTTTAACAGCTGAGGAGTTGGCAGAC
CATCCGTGGTTTAATTTAGACTTTGATACGATAGGTGCTACCTCTGCTTC
TCGCCTTGGCCGCACGAAATTTGATCAACTCGTTCCGGACTTATCGCTTT
CGAACGCGCCCTTTGTGTTTGGTCAAATGAGATATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010204XLOC_010204Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018174-proteinTCONS_00018174-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018174-exon-sc0000290-1491911889:71052..72224TCONS_00018174-exon-sc0000290-1491911889:71052..72224Clytia hemisphaericaexon
TCONS_00018174-exon-sc0000290-1510915933:71052..72224TCONS_00018174-exon-sc0000290-1510915933:71052..72224Clytia hemisphaericaexon
TCONS_00018174-exon-sc0000290-1575043694:71052..72224TCONS_00018174-exon-sc0000290-1575043694:71052..72224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:71052..72224 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.18917	4.19894	7.29222	7.29737	1.78669	1.84328	3.0282	3.32222	2.01584	2.22804	2.16259	2.8432	4.20992	3.76199	3.57352	5.3375	6.68588	7.95719	4.77289	4.21665	6.90308	7.13335	6.24518	6.52177	91.3944	52.4034	3.12875	2.63896	2.41004	2.1225
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00018174 vs. Swiss-Prot (Human)
Match: TRIB2 (Tribbles homolog 2 OS=Homo sapiens GN=TRIB2 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.498e-53
Identity = 90/152 (59.21%), Postives = 116/152 (76.32%), Query Frame = -3 
Query:  623 RTRLKLETLDSAHIVDKDSTDILHDKHGCPAYVSPEILESTVGYSSKAADVWSLGVIIYTLLTGRYPFHDHDPTALFVKIKSGLFIVPETLSASASCLIHSILRKPPTERLTAEELADHPWFNLDFDTIGATSASRLGRTKF-DQLVPDLSL 1075
            RTR+KLE+L+ A+I+  D  D L DKHGCPAYVSPEIL ++  YS KAADVWSLGV++YT+L GRYPFHD +P++LF KI+ G F +PETLS  A CLI SILR+ P+ERLT++E+ DHPWF+ DF    + S S  G  +  DQLVPD+++
Sbjct:  188 RTRVKLESLEDAYILRGDD-DSLSDKHGCPAYVSPEILNTSGSYSGKAADVWSLGVMLYTMLVGRYPFHDIEPSSLFSKIRRGQFNIPETLSPKAKCLIRSILRREPSERLTSQEILDHPWFSTDF----SVSNSAYGAKEVSDQLVPDVNM 334
The following BLAST results are available for this feature:
BLAST of TCONS_00018174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRIB21.498e-5359.21Tribbles homolog 2 OS=Homo sapiens GN=TRIB2 PE=1 S... [more]
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