|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018187 ID=TCONS_00018187|Name=TCONS_00018187|organism=Clytia hemisphaerica|type=transcript|length=1969bp
ATCAATGCTTATGTAAGGGACGAAATACCTTAAagaaaaataggaagtag
accACCTGTAGTGGTTTGTGAGTGGGTAGTATTCAACTATAAAAAGGATA
GTCAGAATCAAGGATGGTTTAGTCAACAGTGTAATCACATAAACCTTCAA
GTCTTGTCAAAAGCAAAAAGTCAGGAGGACTAGCAATAAGGACGACCATG
AAGCTGAGAGatttcatcATCTTATCCTTACTGGTAACAACCTGGTTGGG
AATTTGTAACACAATGACTGTGCAATCAATCAACGAGCTACAAGCTCTTC
TAAACGTCTACAAAGAAGAACTAATCGAAACGGAGACCGCCAAActacaa
caaaaaaacaaacaaacacttCCCGTGATCAAATCTGAAGACAGTCAAAT
TTGCGGCCGAAAAATCcgtgaaatttatcaaaaatgtaaaaatgagaCTT
CAGAAAAGGCAGTAGACTGTGACAAAAGATACAGCGAAAATTACCCAGTT
TGCTTTTTCGGGAATTCTATCATACCGGGAAAATCGAGCGGTGGCAAAAG
TTGTTCAAAAACCTGTTTACGATACATGAATAATTGCCTAACACAATCTA
ACAAATTGGAAATCTATTTATGTATGGGTGGTAGGGATACTTGTATGAGA
CAATGCGGTGCAAGTCAAAAACAAGGAAGTGTAGTGGAGGACAGGAGACG
GGAAGTGGAAAAGACACCAACCCTTAGTAAGAGAGTCTCATGTAAACTTG
AATGTAACAATAATTATAAGACATGTAAAACTTGGGGTGATATTGGTAAA
GTGTGCGACGCAGCCCATATGGTATGTAATAATAATTGCCAAAAAACTTT
CCAATAATTTGTAttcattttgtttatttatttcgcGCGTAACAATTAGG
TTTATCTTATTTATTATTGTATTTATTATTAAGAAATAGTTTaagaaata
ttataaatttgtaaaataaaatctgaaatgaataattgaaattgtaaaat
attttgataacattttaCGTTCACCCCAACTTATTTACATATAAAGAGAA
ATTTAAGGAACCATGAAACTCCATGAAATCAAGAGTCACTCTTTTATTGT
TTTCCCATGTGAAATCCGTAAATTATATGGCTTACCATTGTTTATTAGAG
TCTACAACACTTTTAACGTCTCATGCGTTTAGGATCAAAATGACATAATA
TTTTTACTTGTGATTcactttcataaaaaactggaaaatttgatagTTGA
GTGCGCTTACTTAGGTTTAactcaaaactttgaaacactGACGATTACAT
TGGGACTGTAGGCGGTCACAAACGTTGAATTTGTATGATGCAACAGCATT
CGACTTTGCACAATGTCGAAAAGTCCATGTGCATTTCTTAAAGCATCTAT
TCGATCCTCCAGCACTGCTGACCATCCTTTTCTTTTGTAGAAATACATTA
TCCGAATTCAATTTTGCCAGCGAATTGTATTTCCTTTCTAGGGAATCTAA
AACATCAATCGGGGAATCTTCTTTCTCGTCTCTTTCTTTCAGGGAATCGC
AATCAGCCTCGCATGCATCCTTTCCAACAACACAAGTGAAAGATTCAACG
CTCTCAGCTTTCAAATAACAATTATGAAATGCGGTTCCACAAGACAGCTT
ACATTTGATTGGGTCTGTAATTTGACCATGATCTTTGGGAATGAAGCAGG
CTGGGAAACATTTGATGAACACGTCAGCCCCTTGAGTTTGTACTTCCGTC
TTACTATCCAGTAATGCTGTCATGTAATTATTGCGGCATTTCTTGATGCA
CCCGTCTGCTGTGAGCTCTTTTTGAGTTGAATTTGGATCGGAATCATCAT
TTTGTTTCAACTTGATTGTTTTTTTCACTAAGGACAATAAATCTTCGATT
TCAGAGACTGAGGTTATATGTTTGCATGGTGCTTGGCGAACCAACAGCAA
CAAACTTATCGATGTAACG Run BLAST on NCBI transcript from alignment at sc0000291:12343..16185+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018187 ID=TCONS_00018187|Name=TCONS_00018187|organism=Clytia hemisphaerica|type=transcript|length=3843bp|location=Sequence derived from alignment at sc0000291:12343..16185+ (Clytia hemisphaerica)
ATCAATGCTTATGTAAGGGACGAAATACCTTAAagaaaaataggaagtag
accACCTGTAGTGGTTTGTGAGTGGGTAGTATTCAACTATAAAAAGGATA
GTCAGAATCAAGGATGGTTTAGTCAACAGTGTAATCACATAAACCTTCAA
GTCTTGTCAAAAGCAAAAAGTCAGGAGGACTAGCAATAAGGACGACCATG
AAGCTGAGAGGTAACAttttattaaaatctttttaataaaaatcttttta
attttattaattATCATGATTTTGTCAGTTCATGTAAAGATTTGTGATAT
TTTGTTGGTCCTAACGGCCCTTTTAAAGCCGTCTCTTATACAGCAGGTCC
GAATATAGCGCTAAcattattaaaaaattgagtgaaACATCGATCCGCTT
AAAACTCACCTCACGGTAGTGGAATTATTTAGTAATACTTATACATCAGC
GGCTATAACATGAAAGCGGAGCATCCGCGATGTGCGTAAAGAGGCGGATC
AAGTGTCGGTGGCGACATCCTAGGGAAAGGAGCAGGCCCTCCCCTACCTT
GGTAGACAGCTAAAGAAAATAGAGCCTACTTTCGGATATATGTAATTTTC
TAAATATAATAGAAGTGtataggggccgtccacatagtacgtacgcacta
aaatgtcgaaaatcgagtaccccctcccctctgtacgcaagcgtacgcaa
attgctataccccctggtaagtacgtactttttcaatCAGCTCCCCCacc
ctcggttgaagaaaatttctaattcaaatcgtttggttaagagctttatt
tcatacatgaaactcaatgtttattagccctattcatactaggctttaaG
AGgtggttcaaaactagggggggcttttcctgcaccagcccttaactttt
gatctagtgggtctttttggatgaaatgtggcacacaagatccttgtcac
ataaggtaacttttgacaaatttttttttgataacgtcactcatcatgct
cAAAGTNgaaactttttcttttcctcgaTGCGTATAACaagaagcgtaaa
agtcgaaagaaaaacaagcaaaaaagggccatgaaaagtttttctttgcG
TACGTACGTTTTCCTTTGACctctcccctccccctgtacgcaagcatacg
cttttgagaagacccctcctcccggggggggggcactcaaggtaaatgac
ctaccagacgttcggcccttaagggtaggtttttcatagttcagctagtg
cactgtaagggtaggaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAATTTTGGgtcg
aacgtatggtcgttttcagatcgagtgcccccccgggcccctcctccccc
cttagtgcgtacgtactatgtggacggccccaaaGGAGTGGCACAAAAGC
GAGACATTGGACTGGAAGTCTTTCTTgcatttttcaataatttttcaaag
tacCTCGCCTAAAAAGTTgccattttttttttagatttcatcATCTTATC
CTTACTGGTAACAACCTGGTTGGGAATTTGTAACACAATGACTGTGCAAT
CAATCAACGAGCTACAAGCTCTTCTAAACGTCTACAAAGAAGAACTAATC
GAAACGGAGACCGCCAAActacaacaaaaaaacaaacaaacacttCCCGT
GATCAAATCTGAAGACAGTCAAATTTGCGGCCGAAAAATCcgtgaaattt
atcaaaaatgtaaaaatgagaCTTCAGAAAAGGCAGTAGACTGTGACAAA
AGATACAGCGAAAATTACCCAGTTTGCTTTTTCGGGAATTCTATCATACC
GGGAAAATCGAGCGGTGGCAAAAGTTGTTCAAAAACCTGTTTACGATACA
TGAATAATTGCCTAACACAATCTAACAAATTGGAAATCTATTTATGTATG
GGTGGTAGGGATACTTGTATGAGACAATGCGGTGCAAGTCAAAAACAAGG
AAGTGTAGTGGAGGACAGGAGACGGGAAGTGGAAAAGACACCAACCCTTA
GTAAGAGAGTCTCATGTAAACTTGAATGTAACAATAATTATAAGACATGT
AAAACTTGGGGTGATATTGGTAAAGTGTGCGACGCAGCCCATATGGTATG
TAATAATAATTGCCAAAAAACTTTCCAATAATTTGTAttcattttgttta
tttatttcgcGCGTAACAATTAGGTTTATCTTATTTATTATTGTATTTAT
TATTAAGAAATAGTTTaagaaatattataaatttgtaaaataaaatctga
aatgaataattgaaattgtaaaatattttgataacattttaCGTTCACCC
CAACTTATTTACATATAAAGAGAAATTTAAGGAACCATGAAACTCCATGA
AATCAAGAGTCACTCTTTTATTGTTTTCCCATGTGAAATCCGTAAATTAT
ATGGCTTACCATTGTTTATTAGAGTCTACAACACTTTTAACGTCTCATGC
GTTTAGGATCAAAATGACATAATATTTTTACTTGTGATTcactttcataa
aaaactggaaaatttgatagTTGAGTGCGCTTACTTAGGTTTAactcaaa
actttgaaacactGACGATTACATTGGGACTGTAGGCGGTCACAAACGTT
GAATTTGTATGATGCAACAGCATTCGACTTTGCACAATGTCGAAAAGTCC
ATGTGCATTTCTTAAAGCATCTATTCGATCCTCCAGCACTGCTGACCATC
CTTTTCTTTTGTAGAAATACATTATCCGAATTCAATTTTGCCAGCGAATT
GTATTTCCTTTCTAGGGAATCTAAAACATCAATCGGGGAATCTTCTTTCT
CGTCTCTTTCTTTCAGGGAATCGCAATCAGCCTCGCATGCATCCTTTCCA
ACAACACAAGTGAAAGATTCAACGCTCTCAGCTTTCAAATAACAATTATG
AAATGCGGTTCCACAAGACAGCTTACATTTGATTGGGTCTGTAATTTGAC
CATGATCTTTGGGAATGAAGCAGGCTGGGAAACATTTGATGAACACGTCA
GCCCCTTGAGTTTGTACTTCCGTCTTACTATCCAGTAATGCTGTCATGTA
ATTATTGCGGCATTTCTTGATGCACCCGTCTGCTGTGAGCTCTTTTTGAG
TTGAATTTGGATCGGAATCATCATTTTGTTTCAACTTGATTGTTTTTTTC
ACTAAGGACAATAAATCTTCGATTTCAGAGACTGAGGTTATATGTTTGCA
TGGTGCTTGGCGAACCAACAGCAACAAACTTATCGATGTAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018187-exon-sc0000291-1491911889:12343..12552 | TCONS_00018187-exon-sc0000291-1491911889:12343..12552 | Clytia hemisphaerica | exon |
| TCONS_00018187-exon-sc0000291-1510915933:12343..12552 | TCONS_00018187-exon-sc0000291-1510915933:12343..12552 | Clytia hemisphaerica | exon |
| TCONS_00018187-exon-sc0000291-1575043694:12343..12552 | TCONS_00018187-exon-sc0000291-1575043694:12343..12552 | Clytia hemisphaerica | exon |
| TCONS_00018187-exon-sc0000291-1491911889:14427..16185 | TCONS_00018187-exon-sc0000291-1491911889:14427..16185 | Clytia hemisphaerica | exon |
| TCONS_00018187-exon-sc0000291-1510915933:14427..16185 | TCONS_00018187-exon-sc0000291-1510915933:14427..16185 | Clytia hemisphaerica | exon |
| TCONS_00018187-exon-sc0000291-1575043694:14427..16185 | TCONS_00018187-exon-sc0000291-1575043694:14427..16185 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000291 | supercontig | sc0000291:12343..16185 + |
Blast
The following BLAST results are available for this feature:
|
