TCONS_00018199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018199
Unique NameTCONS_00018199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length904

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018199 ID=TCONS_00018199|Name=TCONS_00018199|organism=Clytia hemisphaerica|type=transcript|length=904bp
GTGTACAATATTAACAGGAGATTACTTATGGACTATGAGAGGCCCAGTCA
CTTTTTATATCTCGGTCAAcgttatatttttcattttaatcatcatgaaa
attcgtcgattgtCTGTGCAACGAAATTCAATAAGAGCAAAATCACAAGG
AAGCAATAATAACGTTAGTCCGAAGACGTTTTTGGTGTTGGTACCATTAC
TTGGGATACCATTTATATTTGCACCCTTTGTTGAATACAGCATTTATATC
GCTTACACTTTCGTCATCATGAATGGACTTACGGGTTTCTACTTATTAGT
TGGGCATGTTATCCTAGACTCGATGGTGGTGGACGAAATCAAGAAAAATC
TGGCTCCTCGCAGAAACAGATCCTCTAATGAAAGTTCAAGTCAAATGTCT
CGACAAAGTAGTACCAAAACTTCATCTTCATAAAAATGGAAACTGAAGAA
ATATTATTTAACGTATATGGGTTaaattttaacttaaatttAAAGTATAA
TTCGGCCTTTAGATTGATCAATAAATTATGTCTATTTACATCAACCTGTA
TTAATAATAACATATCGCTTTGCTGATAGATAACTATCGTGATTGGAACA
ATATCTATTAAAGCATCCTTCTGAACTGAATTTTTGTGACAAAAAGATCC
TTCAATTTTCCACCGCTGTGGAATaatgacaaaatattttgatgtatTTC
AAAACGATCTCCCATCGAAAGTTGTTCCTGGTACATACCGCTTTAGTATA
AACGAAAGCAGCCACCGAGGGGTTCTTCAAAACATCTGTTCTAAAGGCAT
GTTCCAGCTGAAAAGAGCAATCTGTTCTAAGAAAAATGGGAAAgttcact
ttaattgaatcgaaataatagataGACTTTATGTtacgattctctatcac
tgac
Run BLAST on NCBI

protein sequence of TCONS_00018199-protein

>TCONS_00018199-protein ID=TCONS_00018199-protein|Name=TCONS_00018199-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
CTILTGDYLWTMRGPVTFYISVNVIFFILIIMKIRRLSVQRNSIRAKSQG
SNNNVSPKTFLVLVPLLGIPFIFAPFVEYSIYIAYTFVIMNGLTGFYLLV
GHVILDSMVVDEIKKNLAPRRNRSSNESSSQMSRQSSTKTSSS
Run BLAST on NCBI

transcript from alignment at sc0000291:264548..266802+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018199 ID=TCONS_00018199|Name=TCONS_00018199|organism=Clytia hemisphaerica|type=transcript|length=2255bp|location=Sequence derived from alignment at sc0000291:264548..266802+ (Clytia hemisphaerica)
GTGTACAATATTAACAGGAGATTACTTATGGACTATGAGAGGCCCAGTCA
CTTTTTATATCTCGGTAAGATTATTTTTAACTTTATCAATTTCCTGATAC
AGAGGGTAATGAGTCAAACTTTAAACCTCGAAAATccctctgaaagggtc
ccaaaatcacgaaaatcgatATAACGTTCACAAACAAGTGACAACAaagg
ttttttcaaaatatcaaccCACAGGTGcacttaccttatcggggaaaaaa
tgtcggagttttatttagtcggggaaaaatttcgtcacctagaggcactt
tcgtcacttttcccgaCCAAAAtctcaaattcgtcacttttacccgacta
aattgtcaaaaaaaatgGTATCCttcacaaaatgaaaattaatcttgtaa
ttcgatgtttaaagcactaatttcggtaaataaaggtgtaaaaaaattag
atttgaattttggttgcggtATTAAATTTCGGGCAAATGTTTTgttcggg
gataaaaaaatcgtgGGTACAAGTTTTAGTCGGGTGATGAAATGTCGGGG
AAATATTTCGTCAGGGAAAGATTttgtcaccccctcaaaattttcgtcac
tttcccacGACATTTtattccccgataaggtatcctTTCACTTCATACTG
TTCGACTTTTTAGGTCAAcgttatatttttcattttaatcatcatgaaaa
ttcgtcgattgtCTGTGCAACGAAATTCAATAAGAGCAAAATCACAAGGA
AGCAATAATAAGTAAGCATTTTTCTTGTTCATAATCGAAATCACACAACA
TTACTCcagaaacccccccccctccaaaCACATTTCGTATAGAGCTTAGA
ACTTACTGCACCACCTTCATAACAAAAATATGGCTGCTGCTATCTCTAAC
CGAAACGGCGAATGAGATTTTATACAACCTTGTTGCATTGGTAACATAGC
CAAGTAGCTCATCACTGATTCTCCCTTAAACTTCTCCAAACTCGTCCTCA
ATCCactattatgtttttttcttatggTGTTCGTACATTTCCAGCGTTAG
TCCGAAGACGTTTTTGGTGTTGGTACCATTACTTGGGATACCATTTATAT
TTGCACCCTTTGTTGAATACAGCATTTATATCGCTTACACTTTCGTCATC
ATGAATGGACTTACGGTATGtggaaatcttttaatttttcatgttAGATT
CACTTTGAAATGTAATTTTGAAGACTGAAGTCGTCTAGAATCAATGTAAT
GCAGTAAtataggtgttatatgataataccaTCATAATACTAAGATTTGT
TCCTTCCACTATTATGGTCTGAATGAGTCATCTAGCATACTGGACTAGTA
ATTTTGTAACCACAGACTAAAGGGAAGGCCAGGTTTATTAATATTCCGCA
ACTTGGATAAAGGTTTTCAAATTCTTTAGTAtgttttggaaaataattga
aCGCATTTGCACTCCATTGCTCTGCCTTTATCTTATGGTTActaagattt
tttttccgtcaatGGACGAACGGCCAAACGGGCAATTACCTGAAACAGAG
GCCGAATACTTACGATATGATTTCGAATAAATTATGTAGTTGAATAGAAG
TCGGAAATAAGTTTTTCTATCTTCTACTTTTTAGGGTTTCTACTTATTAG
TTGGGCATGTTATCCTAGACTCGATGGTGGTGGACGAAATCAAGAAAAAT
CTGGCTCCTCGCAGAAACAGATCCTCTAATGAAAGTTCAAGTCAAATGTC
TCGACAAAGTAGTACCAAAACTTCATCTTCATAAAAATGGAAACTGAAGA
AATATTATTTAACGTATATGGGTTaaattttaacttaaatttAAAGTATA
ATTCGGCCTTTAGATTGATCAATAAATTATGTCTATTTACATCAACCTGT
ATTAATAATAACATATCGCTTTGCTGATAGATAACTATCGTGATTGGAAC
AATATCTATTAAAGCATCCTTCTGAACTGAATTTTTGTGACAAAAAGATC
CTTCAATTTTCCACCGCTGTGGAATaatgacaaaatattttgatgtatTT
CAAAACGATCTCCCATCGAAAGTTGTTCCTGGTACATACCGCTTTAGTAT
AAACGAAAGCAGCCACCGAGGGGTTCTTCAAAACATCTGTTCTAAAGGCA
TGTTCCAGCTGAAAAGAGCAATCTGTTCTAAGAAAAATGGGAAAgttcac
tttaattgaatcgaaataatagataGACTTTATGTtacgattctctatca
ctgac

Coding sequence (CDS) from alignment at sc0000291:264548..266802+

>TCONS_00018199 ID=TCONS_00018199|Name=TCONS_00018199|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at sc0000291:264548..266802+ (Clytia hemisphaerica)
TGTACAATATTAACAGGAGATTACTTATGGACTATGAGAGGCCCAGTCAC
TTTTTATATCTCGGTCAAcgttatatttttcattttaatcatcatgaaaa
ttcgtcgattgtCTGTGCAACGAAATTCAATAAGAGCAAAATCACAAGGA
AGCAATAATAACGTTAGTCCGAAGACGTTTTTGGTGTTGGTACCATTACT
TGGGATACCATTTATATTTGCACCCTTTGTTGAATACAGCATTTATATCG
CTTACACTTTCGTCATCATGAATGGACTTACGGGTTTCTACTTATTAGTT
GGGCATGTTATCCTAGACTCGATGGTGGTGGACGAAATCAAGAAAAATCT
GGCTCCTCGCAGAAACAGATCCTCTAATGAAAGTTCAAGTCAAATGTCTC
GACAAAGTAGTACCAAAACTTCATCTTCATAATGTACAATATTAACAGGA
GATTACTTATGGACTATGAGAGGCCCAGTCACTTTTTATATCTCGGTCAA
cgttatatttttcattttaatcatcatgaaaattcgtcgattgtCTGTGC
AACGAAATTCAATAAGAGCAAAATCACAAGGAAGCAATAATAACGTTAGT
CCGAAGACGTTTTTGGTGTTGGTACCATTACTTGGGATACCATTTATATT
TGCACCCTTTGTTGAATACAGCATTTATATCGCTTACACTTTCGTCATCA
TGAATGGACTTACGGGTTTCTACTTATTAGTTGGGCATGTTATCCTAGAC
TCGATGGTGGTGGACGAAATCAAGAAAAATCTGGCTCCTCGCAGAAACAG
ATCCTCTAATGAAAGTTCAAGTCAAATGTCTCGACAAAGTAGTACCAAAA
CTTCATCTTCATAATGTACAATATTAACAGGAGATTACTTATGGACTATG
AGAGGCCCAGTCACTTTTTATATCTCGGTCAAcgttatatttttcatttt
aatcatcatgaaaattcgtcgattgtCTGTGCAACGAAATTCAATAAGAG
CAAAATCACAAGGAAGCAATAATAACGTTAGTCCGAAGACGTTTTTGGTG
TTGGTACCATTACTTGGGATACCATTTATATTTGCACCCTTTGTTGAATA
CAGCATTTATATCGCTTACACTTTCGTCATCATGAATGGACTTACGGGTT
TCTACTTATTAGTTGGGCATGTTATCCTAGACTCGATGGTGGTGGACGAA
ATCAAGAAAAATCTGGCTCCTCGCAGAAACAGATCCTCTAATGAAAGTTC
AAGTCAAATGTCTCGACAAAGTAGTACCAAAACTTCATCTTCATAATGTA
CAATATTAACAGGAGATTACTTATGGACTATGAGAGGCCCAGTCACTTTT
TATATCTCGGTCAAcgttatatttttcattttaatcatcatgaaaattcg
tcgattgtCTGTGCAACGAAATTCAATAAGAGCAAAATCACAAGGAAGCA
ATAATAACGTTAGTCCGAAGACGTTTTTGGTGTTGGTACCATTACTTGGG
ATACCATTTATATTTGCACCCTTTGTTGAATACAGCATTTATATCGCTTA
CACTTTCGTCATCATGAATGGACTTACGGGTTTCTACTTATTAGTTGGGC
ATGTTATCCTAGACTCGATGGTGGTGGACGAAATCAAGAAAAATCTGGCT
CCTCGCAGAAACAGATCCTCTAATGAAAGTTCAAGTCAAATGTCTCGACA
AAGTAGTACCAAAACTTCATCTTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010227XLOC_010227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018199-exon-sc0000291-1491911889:264548..264611TCONS_00018199-exon-sc0000291-1491911889:264548..264611Clytia hemisphaericaexon
TCONS_00018199-exon-sc0000291-1510915933:264548..264611TCONS_00018199-exon-sc0000291-1510915933:264548..264611Clytia hemisphaericaexon
TCONS_00018199-exon-sc0000291-1575043694:264548..264611TCONS_00018199-exon-sc0000291-1575043694:264548..264611Clytia hemisphaericaexon
TCONS_00018199-exon-sc0000291-1491911889:265211..265308TCONS_00018199-exon-sc0000291-1491911889:265211..265308Clytia hemisphaericaexon
TCONS_00018199-exon-sc0000291-1510915933:265211..265308TCONS_00018199-exon-sc0000291-1510915933:265211..265308Clytia hemisphaericaexon
TCONS_00018199-exon-sc0000291-1575043694:265211..265308TCONS_00018199-exon-sc0000291-1575043694:265211..265308Clytia hemisphaericaexon
TCONS_00018199-exon-sc0000291-1491911889:265592..265712TCONS_00018199-exon-sc0000291-1491911889:265592..265712Clytia hemisphaericaexon
TCONS_00018199-exon-sc0000291-1510915933:265592..265712TCONS_00018199-exon-sc0000291-1510915933:265592..265712Clytia hemisphaericaexon
TCONS_00018199-exon-sc0000291-1575043694:265592..265712TCONS_00018199-exon-sc0000291-1575043694:265592..265712Clytia hemisphaericaexon
TCONS_00018199-exon-sc0000291-1491911889:266182..266802TCONS_00018199-exon-sc0000291-1491911889:266182..266802Clytia hemisphaericaexon
TCONS_00018199-exon-sc0000291-1510915933:266182..266802TCONS_00018199-exon-sc0000291-1510915933:266182..266802Clytia hemisphaericaexon
TCONS_00018199-exon-sc0000291-1575043694:266182..266802TCONS_00018199-exon-sc0000291-1575043694:266182..266802Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018199-proteinTCONS_00018199-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000291supercontigsc0000291:264548..266802 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.79893	8.4141	4.79467	4.83417	0.441534	0.163195	1.89969	2.63829	3.25866	2.67657	2.64105	2.4735	1.80056	2.13862	4.49836	4.41305	4.09342	5.30301	3.36034	4.07253	4.66298	4.05745	6.7495	5.31822	0.441871	1.11625	2.42712	3.28879	4.25979	3.06463
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
IPR017981GPCR_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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