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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018215 ID=TCONS_00018215|Name=TCONS_00018215|organism=Clytia hemisphaerica|type=transcript|length=1526bp aataaaattaatGTATTTATTGGAACTTTTCATAAGATACAATGTCATAA TACATTCAATCGTTAGTTGCTATCTGAAATGTGGTACCCTTAAACATACC TATTCGTCAGGCTATGTTGGACCAGTATTTATATACGGGAAGCCCGATAC AGAGGACTTATACTGTGTTTATAAGATCAATCCTGGACAGTATTATCCTG AGAGTAAATCAGGTTATCTTTTAACATGGAAAACGTTTGATGTACGATCA AACATGCCTGATTGCTTTGGTAATAATGTACTAGTTTATACAGGatGTGG GTCTAACCAAaaagaaattggatttttttgttcattgaaTGCTGATAAGC CATTTCCGATATATTCACGTGAAGGATGTTTTACCATTGTCTATAGACTT TCAAAACAAGGGCAAGGTGGTGAATTTACTGCTTTTTACAAGCCTATTGA CGACAATAGACTCGATGAAATCTCCAGTGATTGTCCTTTTCTTCGCAAAG AGCTGATTGCATCAAATGGTCTTATATCAACACCGTATTGGCCAAGTCCT TACAGAAAAAAAGTAGGATATCAGTATTCACAATCGTGCAAATGGGAAAT CGCTCCTGAACATACAAACATCGTGGTTGTTATAATGGATGTAGATTTTG CTTCGGATAAGCGTCCTTCAGCTCTATCAAGTCGTAGAGACGTTTTGAAG CTTGGATACAGTCTAGACAATAAACGAGAAGGAGTCACTTACAGCACTGA ATACAGCCATTGGATTGAGAAGAAGCTCTATGCAAAAGACGAAGACACTG AAAAATTGTACACGGCTTCAGGTTTCAGGGTGACTTTCAAAGTATATGAA AATCATTATTTGGATCACAAAAATGGTAGAGGGTTTCTGATTGGTTACAT GTCTTACAAAAAAGTGACAGACTCGGAAAAGAAGGATGACGACGATGGTC TCTCTCCTTTCATCATTTTTGTCATTGTGGCATGTAGCATTGGTGTACTT GGTGTTTGTTCGTGGTATTGTAGCAGACACTCAACACGaagaaatgaaaa tgcttcaagtAATGAGTTAAATGAGGAAGAAAGAAGATCCTTGAATAGAC CAAGTCCTAATCTACAACCAAGGTTAATCATTCATGTCCGTCAGGGTGAT CAAGAATTGCATCATATAGACCAGAGAAACTCGATTACTAGCGTAAACCA GACTAATGGAAATTTACCTGATGCTCAATTATCCGAGGAAGCACCACCAG CCTACAATCCACATTCAAATTATCCAACTGAACCACCACGATCAAATCGT CCACTTCAAAATAATATCAACGAAGAGGCTCCTCCTCCATCTTATGAAGA TGTTTTGCAGGGAACGTATGGATGATATGAGTGACATTTGACGTATGAGA TATATATCCATCTATTTTCTACACACTtaatttttattctatttttttgt aTCTCTATTTATGAAATGTTCAGTATCATTAAGGGTAAATCAATAATAAt atgaataaaaaatgaataaatagaGA Run BLAST on NCBI transcript from alignment at sc0000291:137240..145078- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018215 ID=TCONS_00018215|Name=TCONS_00018215|organism=Clytia hemisphaerica|type=transcript|length=7839bp|location=Sequence derived from alignment at sc0000291:137240..145078- (Clytia hemisphaerica) AATAAAATTAATGTATTTATTGGAACTTTTCATAAGATACAATGTCATAA
TACATTCAATCGTTAGTTGCTATCTGAAATGTGGTACCCTTAAACATACC
TATTCGTCAGGCTATGTTGGACCAGTATTTATATACGGGAAGCCCGATAC
AGAGGACTTATACTGTGTTTATAAGATCAATCCTGGACAGTATTATCCTG
AGAGTAAATCAGGTTATCTTTTAACATGGAAAACGTTTGATGTACGATCA
AACATGCCTGATTGCTTTGGTAATAATGTACTAGTTTATACAGGGTAGGC
TTTTTGTCATTTTTTTGTTGCACCTTTTCACAATGTTCCCATTGAATTTC
ATACACACTTGTCATCTAGAAGTCAGTTGTCTTTGAAACCTAAATTTCAA
AAATAATTTGATAATTTGATGTTAGTTGACTTCAGAAATCATCCAGTTTA
TCAAGATTCTACTACTATTGACTCGAGTTTTGATTGATGTAAAAAAATTA
AGAATGCTTTTATTTTATGTGATTTGATGATAATATTCCAATTATTCCAG
TTTGGTACTGTCTCAAGCATTTTTTTACTTTTTTAGATGTGGGTCTAACC
AAAAAGAAATTGGATTTTTTTGTTCATTGAATGCTGATAAGCCATTTCCG
ATATATTCACGTGAAGGATGTTTTACCATTGTCTATAGACTTTCAAAACA
AGGGCAAGGTGGTGAATTTACTGCTTTTTACAAGCCTATTGACGACAATA
GACTCGATGAAATCTCCAGTGATTGGTATGTAATATTTCTTCTTCCTAGA
AAATGAAGATTTGTTTTGTTTCTTTCATTGTTACTACTTCTAGCCGTTTT
TTTATCAACCCTTCCAACCCGCGGCAAACCCGGCTATAACTCCTGACCAC
TTGATATAAAAGGGCTTATAGAAAGTAATTCAAAATACCTTGCAACTTGT
ACCAAAATCAATGTCTAACTCCCCAGTTAGCTGTTCTAACCCTCTGAGGA
TTCCTGTGCCATTGGTTGTTTTAGTCAGCTTTTTACAAACTTTTTTACAA
CCTCTTATAAAATGTGCTTTAATGAAATACCTAATTTCGATAATTTCAAC
TATCGCAAAGTCTCGTAAAATTCGAAGTTAAGATTTTATCAAAAATGCCC
AGTTAAAAAGTTTTTTTGACCTGAAGATTACCTAATTGAATTTCAGTTCA
TAAAACTTATACTTTTTAGGTACCTATACTTATGTTAGGTATGAAAAAAT
CATTTTCTTCTTCTTGGTTAGACCCCAAAGAAATCGTAAGGCCCTTGAAG
TTCTATTTGAAAGCTCATTATGGTAGTGGATAATAAAATTGACTTTCCCA
AAACATGGTCATATTGCATACCAGAATGTTTCAAATTTGATGTAGATTTA
GAAAAACATTAGTACCATACGTCAAAAATGAGGTCAATGAATATTTTGAC
CCTTCAAAGCCGTTTTTTGACAAAAAACAGGCGCAATTGCATTAGACATG
AAGTCCTGAGTTCGAATCAGTAGAAGTAGGGTATAGACATCTCTATAAAT
AATATTAATGAAAGCAAAGAACAATTATAGGATCAACGTGCTAAAATATA
TAAGAACAGGCAAACCTTAACGAATATTAACCCTTTCAGTCCCACGCGAC
CGCACTGCGGTCCCTTTAGACCCGTCGTTTTTTCCCAGAGGACTGCATAG
CGGTCCCTGATTTATTTTTCAAATTGTGATGTTTTGGCGGGAAATAAAGA
GATGTCTTTAAACAGCTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTATCAATCGT
TATGATTTTTCTATGAGGGCTAATCAAACAATTCTTTTTTCAGTTAGTAG
ATACTGTTGTGCTAAACATTTATCAGAAGAATGAATGGGTTTAAATTATT
TTTTCATAAAAAAAATTACAATTGAATGGCAAAAAAATGCTGTTTTCAAA
TTATTTTTTGCCTTTCTCTGGTCATGTGACACGCTGGTGACGTCATTTTG
CAAGTTTTTTTCTATTAAAATGATCCTCATACTATAAGTGAAAAAGGGTG
AAAACTTGAGAGGACTAGGNTTTCTCTGGTCACGTGACACGCTGATGACG
TCATTTTGCAAATTTTTTTCTGTCAAAATGATCCTCATACTATAAGTGAA
AAAGGGTGAAAACTTGAGAGGACTAGGTTTAGTGATTCCAGAGATATTGA
AGCATGAGTAAATGCATTCAAAAACTCATTTTACGGCTCTGGGAAAGTAA
CTGTGAAAACTCTGGGACTGAAAGGGTTAAAAACTGGCTCTTACAAAAAT
AAGGACATAGTTGTTTGAAGAAATTATCGTGTTCCAACTTACGAACAGTT
TTTACTTTTTGCCCACAGTCCTTTTCTTCGCAAAGAGCTGATTGCATCAA
ATGGTCTTATATCAACACCGTATTGGCCAAGTCCTTACAGAAAAAAAGTA
GGATATCAGTATTCACAATCGTGCAAATGGGAAATCGCTCCTGAACATAC
AAACATCGTGGTTGTTATAATGGATGTAGATTTTGCTTCGGATAAGCGTC
CTTCAGCTCTATCAAGTCGTAGAGACGTTTTGAAGCTTGGATACAGTCTA
GACAATAAACGAGAAGGAGTCACTTGTAAGTCGAGCATTTCTTGCGCATG
GCTTCAAATTGGGATACCTGGCTCGAATCTCGCTCCCGCTTTCCGCGCCA
AGCCAGTTGGCCGTTGACCTCGTCAAAACAATCCAACGACTGTCTAAAAG
TCCTAGACTATAAAGCCCCTGAACGTAAATATCGACTTTATCATGTTAGA
GTAAAACTCTTTATGTTAGGTATATGCGATCTAACTTTCCCAGAAAAGCT
TTGGGAGAATTTTTCTTTAAAAAAAATTGTCCTATTGACTTTGATTTATT
TTAGACAGCACTGAATACAGCCATTGGATTGAGAAGAAGCTCTATGCAAA
AGACGAAGACACTGAAAAATTGTACACGGCTTCAGGTTTCAGGGTGACTT
TCAAAGTATATGAAAATCATTATTTGGATCACAAAAATGGTAGAGGGTTT
CTGATTGGTTACATGTCTTACAAAAAAGGTAGCTTAATACACTTCTTTCT
GGTGCAGTGCAGTCTCTTTAACTCGAACCTCTAACACTCGAATGTCTCGA
ACAAGTTTTGTCGTCCCTTATTCAGTGAACAGCGTCTTATAAACCTTACT
TTGTTGTGTCGTCTATCTTCAGCATAATTATGGCATTGTGTGTATATGTA
TACAATTAAAACTAAAATATTTAATAAAAATGGGAATTTCATACAAAACT
TTTGAGGTTTAACATTAGACTTGAGGATCACAGGATCATAAAGCTCAAAA
TTGTTCCAATAAGGCAAAGAAGAGTAGTAGAAAAACCTTAAAGCCACTAA
ACTCCTCCCAAATCGAAATATCCGGTGAAAAAAAAGTTCTTAAATCGCAA
TGCTCGCACAAACTGTAAATTCTGAAAAGCGTTTAAATACTCAAAATTTT
TAATAAATTTTGACATTTAGACATTCAGGCACAAATGAAATTAACAAGTA
ATAACATGAATATGAATTAATAATTTCTATATAATATCTTCTTTTATTTC
ATAATTTTATCTTTCAGTGACAGACTCGGAAAAGAAGGATGACGACGATG
GTCTCTCTCCTTTCATCATTTTTGTCATTGTGGCATGTAGCATTGGTGTA
CTTGGTGTTTGTTCGTGGTATTGTAGCAGACACTCAACACGAAGAAATGA
AAATGCTTCAAGTAATGAGTTAAATGAGGAAGAAAGAAGATCCTTGAATA
GACCAAGTCCTAATCTACAACCAAGGTTAATCATTCATGTCCGTCAGGGT
GATCAAGAATTGCATCATATAGACCAGAGAAACTCGATTACTAGCGTAAA
CCAGACTAATGGAAATTTACCTGATGCTCAATTATCCGGTAAGTTATATT
GCTTATCATATTATAAATTATAGGCGTATTGGTGTGGTGGCTATCGCTCT
TAACTCCCGTCTGGGAGGTCCGAGTTCGATTCCCACTGTAGTACCACGGT
TCACTTGACAAGTGAACACACCTTCGCCCGGGTCAACCCATACCATGTGA
GGGGAATCGGGTACCACTACTCTGATGCAAGGGTGTGGGTGATATGCCAG
ACATTGTGGTGTGTGGTGTCACTCATCCCGTTCTGCGCCTGCGACAAGCT
ATATGCTCTCCCGCGCAGTTCGAATGTCATCGCTATGAATCGTGGTAATT
GTGTCTCGCGTGCACAGAACCAGCGGTGTCTGTACAACGCTAAGCGTTCC
AACTTGGAAAAGGAGGAATTCCTACTTCGCAAGGAGTAGGACGCATAGAT
TTAAAAATCCCGAAGGGCTAGATGGCGTACTTTTGCTGAGAAGTGTGCCG
TGGTTAGGTAGGAAATTCTACCTAAGTCAGCGATGGCTTAAAGCACGACA
TCAAGTCCTTCAGGCTTTATAAATCTATGGTAGAACCCATTCCCCAGTGG
GGAGGGCTCATATCATCATATTATGAATTGATAGAGTTGCTAATTTCGTT
TTTCCTTTAATANACTTATGTTAGGTATGAAAAAATCATTTTCTTCTTCT
TGGTTAGACCCCAAAGAAATTGTAAGGCCCTTAAAGTTCTATTTGAAAGC
TCATTATGGTAGTGGATGATAAAATTGACTTTCCCAAAACATGGTCATAT
TGCATACCAGAATATCACAAATTTGATGTAGATTTAGAAAAACATTAGTA
CCATACGTTAAAAATGAGGTCATTGAATATTTTGACCCTTCGCAATTGCA
TTAGACATGAAATCCTGAGTTCGAATCAGTAGAAGTAGGGTATAGACATC
TCTATAAATAATATTAATGAAAGCAAAGAATAATTATAGGATCAACGTGC
TAAAATATATAAGAACAGGCAAACCTTAACGAATATTAAAAACTGGCTCT
TACAAAAATAAGGACATAGTTGTTTGAAGAAATTATTCTGTTCCAACTTA
CGAACAGTTTTTACTTTTTGCCCACAGTCCTTTTCTTCGCAAAGAGCTGA
TTGCATCAAATGGTCTTATATCAACACCGTATTGGCCAAGTCCTTACAGA
CAAAAAGTAGGATATCAGTATTCACAATCGTGCAAATGGGAAATCGCTCC
TGAACATACAAACATCGTGGTTGTTATAATGGATGTAGATTTTGCTTCAG
ATAAGCGTCCTTCAGCTCTATCAAGTCGTAGAGACGTTTTGAAGCTTGGA
TACAGTCTAGACAATAAACGTGAAGGAGTCACTTGTAAGTCGAGCATTTC
TTGCGCATGGCTTCAAATCGGGATACCTGGCTCGAATCTCGCTCCCGCTT
TCCGCGCCAAGCCAGTTGGCCGTTGACCTCGTCCTAACAATCCAACAACT
GTCTAAAAGTCCTAGACTATAAAGCCCCTGAACGTAAATATCGACTCTAT
CATGTTAGAGTAAAACTCTTTATGTTAGGTGTATGCGATCCAACTTTCCC
AGAAAAGCTTTGGGAGAATTTTTCTTAAAAAAAATTGTCTTATTGACTTT
GATTTATTTTAGACAGCAGTGAATACAGCCATTGGATTGAGAAGAAGCTC
TATGCAAAAGACAAAGACACTGAAAATTTGTACACGGCTTCAGGTTTCAG
GGTGACTTTCAAAGTATATGAAAATCATTATTTGGATCACAAAAATGGTA
GAGGTTTTCTGATTGGTTACATGTCTTACAAAAAAGGTAGTAATACACTT
CTTTCTGGTGCAGTGCAGTCTCTTTAACTTGAACCTCTAACACTGGAATG
TCTCGAACAAGTTTTGTCGTCCCTTATTCAGTGAACAGCGTCTTATAAAC
CTTACTTTGTTGTGTCGTCTATCTCCAGCATAATTATGGCATTGTGTGTA
TATGTATACAATTAAAACTAAAATATTTAATAAAAATGGGAATTTCATAC
AAAACTTTTGAGGTTTAACATTAGACTTGAGGATCACAGGATCATAAAGC
TCAAAATTGTTCCAATAAGGCAAAGAAGAGTAGTAGAAAAACCTTAAAGC
CACTAAACTCCTCCCAAATCGAAATATCCGGTGAAAAAAAAGTTCTTAAA
TCGCAATGCTCGCACAAACTGTAAATTCTGAAAAGCGTTTAAATACTCAA
AATTTTTAATAAATTTTGACATTTAGACATTCAGGCACAAATGAAATTAA
CAAGTAATAACATGAATATGAATTAATAATTTCTATATAATATCTTATTC
TTTTATTTCATAATTTTATCTTTCAGTGACAGTCTCGGAAAAGAAGGATG
ACGACGATGGTCTCTCTCCTTTCATCATTTTTGTCATTGTTGCATGTACC
ATTGGTGTAATTGGTGTTTGTTCGTGGTATTGTAGCAGACACTCAACACG
AAGAAATGAAAATGCTTCAAGTAATGAGGGAAATGAGGAAGAAAGAAGAT
CCTTGAATAGACCAAGTCCTAATCCACAACCAAGGTTAATCATTCATGCC
AGTCAGGGTGATCAAGAATTGCATCATATAGACCAGAGAAACTCGATTAC
TAGCGTAAACCAGACTAATGGAAATTTACCTGATGCTCAATTATCCGGTA
AGTTATATTGCTTATCATATTATAAATTATAGGCGTATTGGTGTGGTGGC
TATCGCTCTTAACTCCCGTCTGGGAGGTCCGAGTTCGATTCCCACTGTAG
TACCACGGTTCACTTGACAAGTGAACACACCTTCGCCCGGGTCAACCCAT
ACCATGTGAGGGGAATCGGGTACCACTACTCTGATGCAAGGGTGTGGGTG
ATATGCCAGACATTGTGGTGTGTGGCGTCACTCATCCCGTTCTGCGCCTG
CGACAAGCTATATGCTCTCCCGCGCAGTTCGAATGTCATCGCTATGAATC
GTGGTAATTGTGTCTCGCGTGCACAGAACCAGCGGTGTCTGTACAACGCT
AAGCGTTCCAACTTGGAAAAGGAGGAATTCCTACTTCGCAAGGAGTAGGA
CGCATAGATTTAAAAATCCCGAAGGGCTAGATGGCGTACTTTTGCTGAGA
AGTGTGCCGTGGTTAGGTAGGAAATTCTACCTAAGTCAGCGATGGCTTAA
AGCACGACATCAAGTCCTTCAGGCTTTATAAATCTATGGTAGAACCCATT
CCCCAGTGGGGAGGGCTCATATCATCATATTATGAATTGATAGAGTTGCT
AATTTCGTTTTTCCTTTAATAAAATAGCCTTCTTTGGGAAGTTTTCCCCG
ATAAAGCATAGTACTTTTCTTAACCTTATCTTTGTTTCTGTATTCTAGAG
GAAGCACCACCAGCCTACAATCCACATTCAAATTATCCAACTGAACCACC
ACGATCAAATCGTCCACTTCAAAATAATATCAACGAAGAGGCTCCTCCTC
CATCTTATGAAGATGTTTTGCAGGGAACGTATGGATGATATGAGTGACAT
TTGACGTATGAGATATATATCCATCTATTTTCTACACACTTAATTTTTAT
TCTATTTTTTTGTATCTCTATTTATGAAATGTTCAGTATCATTAAGGGTA
AATCAATAATAATATGAATAAAAAATGAATAAATAGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00018215-exon-sc0000291-1575043694:144785..145078 | TCONS_00018215-exon-sc0000291-1575043694:144785..145078 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1575043694:144304..144492 | TCONS_00018215-exon-sc0000291-1575043694:144304..144492 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1575043694:142204..142460 | TCONS_00018215-exon-sc0000291-1575043694:142204..142460 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1575043694:141751..141924 | TCONS_00018215-exon-sc0000291-1575043694:141751..141924 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1575043694:140891..141211 | TCONS_00018215-exon-sc0000291-1575043694:140891..141211 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1575043694:137240..137530 | TCONS_00018215-exon-sc0000291-1575043694:137240..137530 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1510915933:144785..145078 | TCONS_00018215-exon-sc0000291-1510915933:144785..145078 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1510915933:144304..144492 | TCONS_00018215-exon-sc0000291-1510915933:144304..144492 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1510915933:142204..142460 | TCONS_00018215-exon-sc0000291-1510915933:142204..142460 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1510915933:141751..141924 | TCONS_00018215-exon-sc0000291-1510915933:141751..141924 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1510915933:140891..141211 | TCONS_00018215-exon-sc0000291-1510915933:140891..141211 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1510915933:137240..137530 | TCONS_00018215-exon-sc0000291-1510915933:137240..137530 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1491911889:144785..145078 | TCONS_00018215-exon-sc0000291-1491911889:144785..145078 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1491911889:144304..144492 | TCONS_00018215-exon-sc0000291-1491911889:144304..144492 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1491911889:142204..142460 | TCONS_00018215-exon-sc0000291-1491911889:142204..142460 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1491911889:141751..141924 | TCONS_00018215-exon-sc0000291-1491911889:141751..141924 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1491911889:140891..141211 | TCONS_00018215-exon-sc0000291-1491911889:140891..141211 | Clytia hemisphaerica | exon |
TCONS_00018215-exon-sc0000291-1491911889:137240..137530 | TCONS_00018215-exon-sc0000291-1491911889:137240..137530 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000291 | supercontig | sc0000291:137240..145078 - |
Blast
The following BLAST results are available for this feature:
|