TCONS_00018229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018229
Unique NameTCONS_00018229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1739

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018229 ID=TCONS_00018229|Name=TCONS_00018229|organism=Clytia hemisphaerica|type=transcript|length=1739bp
ACACCATattataaaacaaaattgaaatgattATTATATTAACATTTTTC
ACTTCCACAATAGAAAACATATTATTGAATTataatagaaaaatcaaaac
aaaattgtacTGAGATCAGGTTAGTTTGTTCAAGATGacaaaagaagaag
aagcaaaTGCAGCATCAATTGATGTTGTGCGTATCGATTCAACTGATACT
GATCGCAAACCGAAATCATGTTGTTTGTGTTTGAATGTCAGAATTGGTAC
TATCATGATTGGTCTTTTCAACTTGGTTTGCCATGCTTTTTGGATTGTAT
CCCTTTCTTCGTACATCAAAAAGCATCAGTCAACTGAATTGTCTAAACAT
TTGAAAGAATGGAAAGTGATCAATCATTTCAGTGATTTTGCTCAACAACA
CCAACAAAATATCAACCACAATATGATTGCTATGGTTGTTGCTTGCCTGA
GCTTTTTGATTGTTGTCATGTTGGTCTATGGAGCCACACTGAGATTGTCC
GGATACATCTTGCCCTTCTTCTGTTTGCAAGTGTTCGATTTGTGTTTATC
TGTTCTGGTCTTTGCCACCGTTACCAGCTATGCACCACAActgaaatact
acttggaagtcTCCGCCCATGATGAAGTCCATCGTCAATACCTTCAAAAT
ATGAGTTTAACTCATTTCAGAATGGTCTTGTTTTCTTTCTGGATTGTCGT
CCTTGCTGTCAAGTATTATTTCGCTAATACTGTTTGGGAATGTTATTGCC
ATTGCAAGAAAATGGAAGAACGAAGAAACGTCCGCACTGACAACCAAGCT
GCCATTTTGTTGTACCAAGGAGATATGGAAACCATGAATTTGTTGCCAAC
ATACGATGACGTTGTCAAGACCAGCCCTCCACCTGCTTACATCCAATAAA
CGTACAAAGTATGTCCATTCGAAATGACGGTGTGTGTCAACTCGCACGAG
GTGTGTGGGCGCAGTTTTTCACCCTCATTCATTCATAATTTACTCGCAAA
TTTACtcagtttttctaaaaaaataaaaactttattatCATGGTAATCTT
TTATAGTTTTGAAGGCTGTAAGGTACTTCTTGGGAATTGTATTGAAAATA
CTTTTAGTTCTGTTTTAAATTAAGTTTATTAGCTAAGTATTGAGAGGGAA
TCAATTGTGtgctttcttttatttgaagaTACTATTTATAACAATGAAAC
TTCGATTTGGGACTTGcttttttttatagattttaaaGATTCTGACAGGT
AGCTTAAGAATTTGATTTCTTAAAAACTTTGCTGGCATGtacaatttata
aaattttatcttTAACAATTTGTCTTATTCCATTTGACCTAAACTTTTTT
CATACGCGGGGTACAGATGagatttgaatatcttttcgtcaaaaaagaaa
ttcagcTGCTTTCTGCATCCTTCTCATTTTTTTCCATTGtacttttttca
gtttttgtatcaaaatttcttatttttctcgGAAAAAGTATGTGCTGGTA
ATTCTTCCTtctctattttttttaaactttctttaaatAGTTGTGAATAA
AAAAAACTCTCTCCTCTTCAGGAGATTTCACCTGCCCAAATTTCGTAAAA
ATACCTCCGGCAAAATCTATTACTCTAGCTGTATTTTTCAAGATATAttc
ttttgatgaaaaatagctTCAATTAGTAGGGGGCAAGCCttgggttccgt
gacatcttttctacgacctagccatttttagtctattcc
Run BLAST on NCBI

transcript from alignment at sc0000291:358651..364359-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018229 ID=TCONS_00018229|Name=TCONS_00018229|organism=Clytia hemisphaerica|type=transcript|length=5709bp|location=Sequence derived from alignment at sc0000291:358651..364359- (Clytia hemisphaerica)
ACACCATATTATAAAACAAAATTGAAATGATTATTATATTAACATTTTTC
ACTTCCACAATAGAAAACATATTATTGAATTATAATAGAAAAATCAAAAC
AAAATTGTACTGAGATCAGGTTAGTTTGTTCAAGATGACAAAAGAAGAAG
AAGCAAATGCAGCATCAATTGATGTTGTGCGTATCGATTCAACTGATACT
GATCGCAAACCGAAATCATGTTGTTTGTGTTTGAATGTCAGAATTGGTAC
TATCATGATTGGTCTTTTCAACTTGGTATGAACAATGTTGTAATTTCATT
ATTTTGAGGGACAAAATAATAGCAAAACAGTTGAAAGCTATCATGAAAAT
CACATTCCTGTATATTATATTTTTGTACAGAAAACATGTACATGTCAACA
TCATTTGCCATATATAAATAGTACTCAAAACGTTTTTAGTTTTGTATCAA
TATTGTAAGGGTCTTATGGAAATACATGTTAGATCTGTAAAACATTAAGT
TGAATTAGTCATTCTATTTGAAAACAAGGCCATCAATGAGTCTGTTTTTC
TAGATTGAGGGAAGAGTAAGCACTCAATTTAAAGATCCTCTGCAGAGTAT
TAAAGCCTTTCCAAATTCTTTTAGGTTTGCCATGCTTTTTGGATTGTATC
CCTTTCTTCGTACATCAAAAAGCATCAGTCAACTGAATTGTCTAAACATT
TGAAAGAATGGAAAGTGATCAATCATTTCAGTGATTTTGCTCAACAACAC
CAACAAAATAGTAAGTGGTCTATTTGATTCAATCTATTTGGTGCGAGTTG
CTATAATACTTATTTATAAGAAAATGAAAATTTAAATTCTATAAAATGAA
CTTAATCCTTCCTATTTCGTGAAAGAAGCTAGTAATGGTCTATAATGATT
TTATTTTGTAGTCAACCACAATATGATTGCTATGGTTGTTGCTTGCCTGA
GCTTTTTGATTGTTGTCATGTTGGTCTATGGAGCCACACTGGTAAGCATT
ACAAAATGCTAATCTTACTTATATACAATTATATGTATTGTTCTAGATGT
TTGTTTATATTATTGACTTATGATTTTGTGTGATTTCTCGTGGAATTATT
ACTAAATATTGTTATATGCTTACTCTAAAGGGTTATATTTGTTTTATGCT
TTTGCTGTAGATAAACTAAAGTTTTTGAAATTGAACTGGTCGAAATGAAT
AAAGAACACTCGAATGTTTTTTCTAAATAAGTATTGCACATGACATTATG
TTTTTTACAGAGATTGTCCGGATACATCTTGCCCTTCTTCTGTTTGCAAG
TGTTCGATTTGTGTTTATCTGTTCTGGTCTTTGCCACCGTTACCAGCTAT
GCACCACAACTGAAATACTACTTGGAAGTCTCCGTAAGTATCACTCCATC
TATGTTTATGATACTTCCCAATATTATATCGATTTTGTGAACAGGTGTCG
GGTTCTACATTTGTATAAATGTTGTTTCTTTAAAGCTACAGTAAGCTGTA
TCTCCTTCCCTTCGAGTTAAAAACCTAAAAGCCNCTGTCAACATCATTTG
CCATATATAAATAGTACTCAAAACGTTTGTAGTTTTGTATCAATATTGTA
AGGGTCTTATGGAAATACATGTTAGATCTGTAAAACATTAAGTTGAATTA
GTCATTCTATTTGAAAAAAAGGCCATCAATGAGTCTGTTTTTCTAGATTG
AGGGAAGAGTAAGCACTCAATTTAAAGACCCTCTGCAGAGTATTAAAGCC
TTTCCAAATTCTTTTAGGTTTGCCATGCTTTTTGGATTGTATCCCTTTCT
TCGTACATCAAAAAGCATCAGTCAACTGAATTGTCTGAACATTTGAAAGA
ATGGAAAGTGATCAATCATTTCAGTGATTTTTCTCAACAACACCAACAAA
ATAGTAAGTGGTCTATTTGATTCAATCTATTTGGTGCGAGTTGCTATAAT
ACTTATTTATAAGAAAATGAAAATTTAAATTCTATAAAATGAACTTAATC
CTTCCTATTTCGTGAAAGAAGCTAGTAATGGTCTATAATGATTTTATTTT
GTAGTCAACCACAATATGATTGCTATGGTTGTTGCTTGCCTGAGCTTTTT
GATTGTTGTCATGTTGGTCTATGGAGCCACACTGGTAAGCAATACAAAAT
GCTAATCTTACTCATAATTATATACAATTATATGTATTGTTCTAGCTGTT
TGTTTATATTATTGACTTATGATTTTGTGTGATTTCTCTTGGAATTATTA
CTAAATATTGTTATATGCTTACTCTAAAGGGTTATATTTGTTTTATGCTT
TTGCTGTAGATAAACTAAAGTTTTTGAAATTGAACTGGTCGAAATGAATA
AAGAACACTCGAATGTTTTTTCTAAATAAGTATTGCACATGACATTATGT
TTTTTTACAGAGATTGTCCGGATACATCTTGCCCTTCTTCTGTTTACAAG
TGTTCGATTTGTGTTTATCGGTCCTCGTCTTTGCCACCGTTACCAGCTAT
GCACCACAACTGAAATACTACTTGGAAGTCTCCGTAAGTACCACTCCAAC
TATATTTATGATACTTCCTAATATTGTATCGATTTTGTGCACCGGTGTTG
GGTTCTACTTTTGCTTTAAATATTGTTTCTTTAAAGCTACAGTGAGCCAT
GTCATATCTCATTCACTCCGAGTTAAAAACCTAAAAGTGTAAATCACTTT
GAGGCCAGATAAAAAAAATTCAGTGATCCCAAATGCCAATGCATCCCCCA
GGAAAGCCAATTCACTTTTTTTAAGTAGCTAGATTCAACATACATTTCAA
CATACATTTCAAATGAATCAATTATTCATTTGTTCTCTTTACAGGCCCAT
GATGAAGTCCATCGTCAATACCTTCAAAATATGAGTTTAACTCATTTCAG
AATGGTCTTGTTTTCTTTCTGGATTGTCGTCCTTGCTGTCAAGGTATTGA
TTTTGTCATTTTAATTTAACTTTCAAATTAAGATTACAGTCAACTCTCTC
TTATTCGAATCTTTCTGTAATTCGAATCCTTTTCTAATTTGAAGAAAGTT
TTTGGTTCCTCGAAGATCGAATTAGAAAGAGTAAACTGTATTTGTCTAAA
ATTTATTTTTAAAAAGATGTCTTAAAATTTTGTCTCATGGGTGGCCCTAA
GAATACTGAGAATAAACACAAAAAGGCTCTTTGATGTTGATGTGACTTTA
CCATTTTTGGGAAGATGAGGAATAGCTCATACGAGGAAATATTTTCTGGT
ATGATATCATTTTGTAACAGTTTAAGATTGAATTAGAAAGAAGTATAATA
TAATTTTCTATAATTATCTGTTTTCTAAAACATCAATCTCGTTTAACATC
ATAGTATTATTTCGCTAATACTGTTTGGGAATGTTATTGCCATTGCAAGA
AAATGGAAGAACGAAGAAACGTCCGCACTGACAACCAAGCTGCCATTTTG
TTGTACCAAGGAGATATGGAAACCATGGTAACTCTTCTCTTTTGTTGTTA
ATGTTAACGTCTCTGATGTCATTTAACACAACAAAATACCGTATTTGTTT
GCTTAGACCTACACGCCACTAAAATTCATGATTATGTGACCCTATAATTA
TTATCTTGGTTTTAAGTGGGTATGTTTGGTTAGGTGGATAATTAGTCAAA
AGCTTTTGAAAACTATTTTTACGAATTCGGCTCTTCCAGAAAAAATTCGT
TCATGGGGGTGGAGGATATTATTTTTTCAATGATCTACCCCTGGGCATTT
AAATTTTTCACCCCCCGGACACGCGTTTTATCCCTGGACAAGCATCAAAT
CGGCCCCCTGGACAGTATGTCTTCTACCCCCTACGAGGGTTTTTTTTCTG
GAAGAACCCATTTCAAATAATGGTAGGGAAAGTTAACAAAATGAGGGGTG
TTCGAATTGATCAGTCTAATTTTTCATACACTGACAACTTTTTAGTGGGT
GGGCGGCTCTAACGAGACCAATGTCAACAACAAAATACAGTGTAATGGTT
TTTCTATGTTTGGCATACGAATACGAAACTCAATATTCAAACATTTTATT
TTCGTCTATTTTCTCTGTGGTCAAAATACTCTTGTTACAATTTTCTTCGT
TAGTCTTTTTCTTGTGATCACATTTCATCTTACGATGTGTGGAGGTCGTC
TTTTGTCAACAAACTATCATCTCATATCCACGTGGTCTAATTTCCATAAT
GGCGGATAATACAATTTTCGTAGCTCTCTTGACTGAATAGATGAAATTAT
ACAATATAAGAAAAAAAGTCCTCAAATTTAGCATGCCTTAAAATTCTGTT
CGTAATATACGTGCACCATTTTGAAAATAAATCCAAGCTTACTGTACACT
CTGAAGATTGTCGGAGTCAAAATAAAACTATAATTTAAGTTAAAAGAGAA
TTTCCGATTCTAACACTTATTAGTACTTCCATTTCCGCAGGTTTACCAAC
CATAACTTACGTTTAGACAGATACTTCAATGGGGAAAACTTAACCGGGGA
AAAGTGACGAGTTTTTTAGGCAAGTCCCCCCTCCCCACGAAAGTATTTTT
GCTCAACTTCCAGGGGGTTGGTATACAGATTTCCAAAAAGTTGACCAAGT
TTCCCCCCGGTAGAATAAAGATATACTATAGTTTTGTTAATGTCATTAAT
ATTGATTAATCATTTTGTTCTTCTCAGAATTTGTTNAACGAAAATTTTGC
CTGACTAAATTTTTTACCTTCAAATTTGAAAAAAAACGGTAGAATAAAAA
TATACTATAGTTTTGTTAATGTCATTAATATCGATAAATCATTTTGTTCT
TCTCAGAATTTGTTGCCAACATACGATGACGTTGTCAAGACCAGCCCTCC
ACCTGCTTACATCCAATAAACGTACAAAGTATGTCCATTCGAAATGACGG
TGTGTGTCAACTCGCACGAGGTGTGTGGGCGCAGTTTTTCACCCTCATTC
ATTCATAATTTACTCGCAAATTTACTCAGTTTTTCTAAAAAAATAAAAAC
TTTATTATCATGGTAATCTTTTATAGTTTTGAAGGCTGTAAGGTACTTCT
TGGGAATTGTATTGAAAATACTTTTAGTTCTGTTTTAAATTAAGTTTATT
AGCTAAGTATTGAGAGGGAATCAATTGTGTGCTTTCTTTTATTTGAAGAT
ACTATTTATAACAATGAAACTTCGATTTGGGACTTGCTTTTTTTTATAGA
TTTTAAAGATTCTGACAGGTAGCTTAAGAATTTGATTTCTTAAAAACTTT
GCTGGCATGTACAATTTATAAAATTTTATCTTTAACAATTTGTCTTATTC
CATTTGACCTAAACTTTTTTCATACGCGGGGTACAGATGAGATTTGAATA
TCTTTTCGTCAAAAAAGAAATTCAGCTGCTTTCTGCATCCTTCTCATTTT
TTTCCATTGTACTTTTTTCAGTTTTTGTATCAAAATTTCTTATTTTTCTC
GGAAAAAGTATGTGCTGGTAATTCTTCCTTCTCTATTTTTTTTAAACTTT
CTTTAAATAGTTGTGAATAAAAAAAACTCTCTCCTCTTCAGGAGATTTCA
CCTGCCCAAATTTCGTAAAAATACCTCCGGCAAAATCTATTACTCTAGCT
GTATTTTTCAAGATATATTCTTTTGATGAAAAATAGCTTCAATTAGTAGG
GGGCAAGCCTTGGGTTCCGTGACATCTTTTCTACGACCTAGCCATTTTTA
GTCTATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010244XLOC_010244Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018229-exon-sc0000291-1575043694:364085..364359TCONS_00018229-exon-sc0000291-1575043694:364085..364359Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1575043694:363600..363735TCONS_00018229-exon-sc0000291-1575043694:363600..363735Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1575043694:363369..363448TCONS_00018229-exon-sc0000291-1575043694:363369..363448Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1575043694:362977..363099TCONS_00018229-exon-sc0000291-1575043694:362977..363099Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1575043694:361417..361515TCONS_00018229-exon-sc0000291-1575043694:361417..361515Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1575043694:360883..361005TCONS_00018229-exon-sc0000291-1575043694:360883..361005Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1575043694:358651..359553TCONS_00018229-exon-sc0000291-1575043694:358651..359553Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1510915933:364085..364359TCONS_00018229-exon-sc0000291-1510915933:364085..364359Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1510915933:363600..363735TCONS_00018229-exon-sc0000291-1510915933:363600..363735Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1510915933:363369..363448TCONS_00018229-exon-sc0000291-1510915933:363369..363448Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1510915933:362977..363099TCONS_00018229-exon-sc0000291-1510915933:362977..363099Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1510915933:361417..361515TCONS_00018229-exon-sc0000291-1510915933:361417..361515Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1510915933:360883..361005TCONS_00018229-exon-sc0000291-1510915933:360883..361005Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1510915933:358651..359553TCONS_00018229-exon-sc0000291-1510915933:358651..359553Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1491911889:364085..364359TCONS_00018229-exon-sc0000291-1491911889:364085..364359Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1491911889:363600..363735TCONS_00018229-exon-sc0000291-1491911889:363600..363735Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1491911889:363369..363448TCONS_00018229-exon-sc0000291-1491911889:363369..363448Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1491911889:362977..363099TCONS_00018229-exon-sc0000291-1491911889:362977..363099Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1491911889:361417..361515TCONS_00018229-exon-sc0000291-1491911889:361417..361515Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1491911889:360883..361005TCONS_00018229-exon-sc0000291-1491911889:360883..361005Clytia hemisphaericaexon
TCONS_00018229-exon-sc0000291-1491911889:358651..359553TCONS_00018229-exon-sc0000291-1491911889:358651..359553Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000291supercontigsc0000291:358651..364359 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.970753	0.485103	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.250038	0	0	0.702573	0.613296	0	0	0	0	1.7545	0.555381	0
Blast
[Close]
BLAST of TCONS_00018229 vs. Swiss-Prot (Human)
Match: LAP4B (Lysosomal-associated transmembrane protein 4B OS=Homo sapiens GN=LAPTM4B PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.070e-20
Identity = 71/237 (29.96%), Postives = 114/237 (48.10%), Query Frame = 3 
Query:  213 KSCCLCLNVRIGTIMIGLFNLVCHAF-WIVSLSSYIKKHQ----STELSKHLKEWKVINHFSDFAXXXXXXXXXXMIAMVVACLSFLIVVMLVYGATLRLSGYILPFFCLQVFDLCLSVLVFATVTSYAPQLKYYLEVSAHDEVHRQYLQNMSLTHFRMVLFSFWIVVLAVKYYFANTVWECYCHCKKMEERRNVRTDNQAAILLYQGDMETMNLLPTYDDV----VKTSPPPAYIQ 896
             SCCLC +VR GTI++G++ L+ +A   ++ LS+     Q    S+EL    +       F D A           IA+ ++ L  LI  M  YGA  + + +I+PFFC Q+FD  L++LV  TV  Y   ++ Y+     +  +R  + +++ T   +++  F  ++L  K Y  + VW CY         R +   N + +L+Y    +T  LLP YDD         PPP Y+ 
Sbjct:  157 NSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPDQYNFSSSELGGDFE-------FMDDANM--------CIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFKGYLISCVWNCY---------RYINGRNSSDVLVYVTSNDTTVLLPPYDDATVNGAAKEPPPPYVS 369
The following BLAST results are available for this feature:
BLAST of TCONS_00018229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAP4B4.070e-2029.96Lysosomal-associated transmembrane protein 4B OS=H... [more]
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