|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018236 ID=TCONS_00018236|Name=TCONS_00018236|organism=Clytia hemisphaerica|type=transcript|length=2189bp
CTTACATTGTGAAAATAAATCGATGAAGGTTAAAATAGCTTCTCTTGTCT
acttacaaagaaaatttggccTCTATATATATTAGGTCCCTACTCCTAAA
ATAAATTCTAATTACCTGATTATACATAATATGGGTTGGGAGTTAATGGC
GTTAGCTTTAGCATTTTGAAATAAGAAAGTCGtcgtaaaataaaacataa
gggAGTCTTAACAGGAAGGTAATTAAATAGGGGATTTGAAAGTAGTTAAA
GGGGTCAAACGAAAGGGGTAATGGGAAAATAGCCTTCTGAGGAGCAAATA
TAATTTGATATTGACTTCATATTCATGCGAAAATGGGGAAATGGGGAATG
GGGTAAATGGCTTCCTGAGATTATGTAACATCGGGTGTCTGCACGAATCC
AAGGGTTAATTTGGTGGTGTGCTCAGAATTTCAATGAAACACGACACCTT
TGGGGCCGGAAAAAATGATGTCCTCATCACTTGGTAGTAATTAAGGATAA
CTAGGGACATAGAAACTCGGGGATTAAAGATTGCTAAAGTGAGTTAAATT
TTAGCTTCACATGGGGGGGGGTAATTTTTAGGGATAACCCGTAAAAAGAG
TTCGCAAAGGACAATAATGGAAATAAAATGTGAACACcaaaaaagattaa
aacaaaaatgacGAAATTACAAAGTTGAATATGTACAAAGATATGTGTGT
AGCGTCACTGTAGGAATGGGGTTTTTCATCTGGATAAAGTTCCTATAAAG
TAGGAGGATAAATGGTTTCCTGAGATTATGTAGTCTCGGGTGTCTGCACG
AGGGTTAATTTGGTGGTGTGCTCAGAATTTCAATGAAACACGACAGAAGG
AAAATTACTCTACAAAACCAtgaaagttttatttaatttgataaaTGTAA
CATGGTTGATTCTTCATTATTGATTTGTTGAGGAAATCGTTCGATATATC
TTGCAGGATgttctttgattttattcatttttctcaTAAGTCTTTTGACG
TCATTACTGGTTAAGTCCCTGTAGAGATTGATTGTAGGTAGCCAAAAGTG
TGGACAACATCTACCATCTAAAGCATCCATAAATAAATCAAATAGAAAAT
TAAAGCAAACTTCAATATCATTCTCAACCCAAAACTCGGGCCcacttttt
tctaaagaaaaatataaaattgtctTGAGCCCGTACCCAGATACGGATTG
TTTAATACTGGAAATATAATCTTTAAGAATTATTTTCATACATAGAAAAC
AAGCGCGTGCATTCTCgggaatcaattttgaaagttcaacttctgctttt
gaaaatgaaatacgCCAGTTGTAGGTTTGAGGTTGTTTGAGCTTGTTATC
CCAACCGGAAGACTTTGGAACAAAATGGCAACCATATCCGGAAATTCGTT
CCACGTCCTCTACAGTTGGCCATTTCTTACTGCGTAGAGTCCAGTCGCTT
AAATGTTCAGGCCATTGAACACATTTCAAAGCAAAGGTTATATCAACATT
AAATTTGTAATCAAACTTAATTTTACCTCCAATTTTGATAGCAGGGCCTG
TCACCTCTGATTGTCCTTCAATATGGTGTTTACATTTCAAAAGATTAAGA
TATTTTGTATTCCTGAATTTGCTATCAACGGAAGACTTGATTTTTAATTT
CACGGCCTTTGCGTTTAGATATGTGACATGTTcgttatcaaaaatcaaaa
catatggCATTCTCATATCAGGCTCGTTTTCGTTTGTTTCAACATAAAAG
CGCTGATCATCCTCTGTAAAACTTGCACATAAAGTTCTTGGCGTAATCAT
ATAGTCCATATCACTAAACAGGGGATGAGATTCTTGAAAGAGAACAGAAT
CTGGTACTGTTTTGTTCGCCATTGGAACACAAAAGCGTTCTGCGGTACTG
CCACTTAAGAAGATATCTAGCTCTTCAAAATCCATATTTTCCTCAAGTAA
ACATACCAAAGGTCGAACAACTTCATTGAGATATTCATCGTCTATTTCTG
ACATTTCTTCCCTAGTCAGTATTGCTTGTTGTGTTTCTTCAATAATTTCA
GATAACGACAAATCATGTTGCTTTGTGCGCCTTCGTTCTTCCTTCATTAT
TGGGATTCCACAACGTTTCCAATACCAAGCAATACACGGGAAACATACGA
TCCACATGATACAGTATAAGCAGCACATCCTCAAATTCT Run BLAST on NCBI protein sequence of TCONS_00018236-protein >TCONS_00018236-protein ID=TCONS_00018236-protein|Name=TCONS_00018236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp
NLRMCCLYCIMWIVCFPCIAWYWKRCGIPIMKEERRRTKQHDLSLSEIIE
ETQQAILTREEMSEIDDEYLNEVVRPLVCLLEENMDFEELDIFLSGSTAE
RFCVPMANKTVPDSVLFQESHPLFSDMDYMITPRTLCASFTEDDQRFYVE
TNENEPDMRMPYVLIFDNEHVTYLNAKAVKLKIKSSVDSKFRNTKYLNLL
KCKHHIEGQSEVTGPAIKIGGKIKFDYKFNVDITFALKCVQWPEHLSDWT
LRSKKWPTVEDVERISGYGCHFVPKSSGWDNKLKQPQTYNWRISFSKAEV
ELSKLIPENARACFLCMKIILKDYISSIKQSVSGYGLKTILYFSLEKSGP
EFWVENDIEVCFNFLFDLFMDALDGRCCPHFWLPTINLYRDLTSNDVKRL
MRKMNKIKEHPARYIERFPQQINNEESTMLHLSN Run BLAST on NCBI transcript from alignment at sc0000291:85887..88075 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018236 ID=TCONS_00018236|Name=TCONS_00018236|organism=Clytia hemisphaerica|type=transcript|length=2189bp|location=Sequence derived from alignment at sc0000291:85887..88075 (Clytia hemisphaerica)
AGAATTTGAGGATGTGCTGCTTATACTGTATCATGTGGATCGTATGTTTC
CCGTGTATTGCTTGGTATTGGAAACGTTGTGGAATCCCAATAATGAAGGA
AGAACGAAGGCGCACAAAGCAACATGATTTGTCGTTATCTGAAATTATTG
AAGAAACACAACAAGCAATACTGACTAGGGAAGAAATGTCAGAAATAGAC
GATGAATATCTCAATGAAGTTGTTCGACCTTTGGTATGTTTACTTGAGGA
AAATATGGATTTTGAAGAGCTAGATATCTTCTTAAGTGGCAGTACCGCAG
AACGCTTTTGTGTTCCAATGGCGAACAAAACAGTACCAGATTCTGTTCTC
TTTCAAGAATCTCATCCCCTGTTTAGTGATATGGACTATATGATTACGCC
AAGAACTTTATGTGCAAGTTTTACAGAGGATGATCAGCGCTTTTATGTTG
AAACAAACGAAAACGAGCCTGATATGAGAATGccatatgttttgattttt
gataacgAACATGTCACATATCTAAACGCAAAGGCCGTGAAATTAAAAAT
CAAGTCTTCCGTTGATAGCAAATTCAGGAATACAAAATATCTTAATCTTT
TGAAATGTAAACACCATATTGAAGGACAATCAGAGGTGACAGGCCCTGCT
ATCAAAATTGGAGGTAAAATTAAGTTTGATTACAAATTTAATGTTGATAT
AACCTTTGCTTTGAAATGTGTTCAATGGCCTGAACATTTAAGCGACTGGA
CTCTACGCAGTAAGAAATGGCCAACTGTAGAGGACGTGGAACGAATTTCC
GGATATGGTTGCCATTTTGTTCCAAAGTCTTCCGGTTGGGATAACAAGCT
CAAACAACCTCAAACCTACAACTGGcgtatttcattttcaaaagcagaag
ttgaactttcaaaattgattcccGAGAATGCACGCGCTTGTTTTCTATGT
ATGAAAATAATTCTTAAAGATTATATTTCCAGTATTAAACAATCCGTATC
TGGGTACGGGCTCAagacaattttatatttttctttagaaaaaagtgGGC
CCGAGTTTTGGGTTGAGAATGATATTGAAGTTTGCTTTAATTTTCTATTT
GATTTATTTATGGATGCTTTAGATGGTAGATGTTGTCCACACTTTTGGCT
ACCTACAATCAATCTCTACAGGGACTTAACCAGTAATGACGTCAAAAGAC
TTAtgagaaaaatgaataaaatcaaagaacATCCTGCAAGATATATCGAA
CGATTTCCTCAACAAATCAATAATGAAGAATCAACCATGTTACAtttatc
aaattaaataaaactttcaTGGTTTTGTAGAGTAATTTTCCTTCTGTCGT
GTTTCATTGAAATTCTGAGCACACCACCAAATTAACCCTCGTGCAGACAC
CCGAGACTACATAATCTCAGGAAACCATTTATCCTCCTACTTTATAGGAA
CTTTATCCAGATGAAAAACCCCATTCCTACAGTGACGCTACACACATATC
TTTGTACATATTCAACTTTGTAATTTCgtcatttttgttttaatcttttt
tgGTGTTCACATTTTATTTCCATTATTGTCCTTTGCGAACTCTTTTTACG
GGTTATCCCTAAAAATTACCCCCCCCCATGTGAAGCTAAAATTTAACTCA
CTTTAGCAATCTTTAATCCCCGAGTTTCTATGTCCCTAGTTATCCTTAAT
TACTACCAAGTGATGAGGACATCATTTTTTCCGGCCCCAAAGGTGTCGTG
TTTCATTGAAATTCTGAGCACACCACCAAATTAACCCTTGGATTCGTGCA
GACACCCGATGTTACATAATCTCAGGAAGCCATTTACCCCATTCCCCATT
TCCCCATTTTCGCATGAATATGAAGTCAATATCAAATTATATTTGCTCCT
CAGAAGGCTATTTTCCCATTACCCCTTTCGTTTGACCCCTTTAACTACTT
TCAAATCCCCTATTTAATTACCTTCCTGTTAAGACTcccttatgttttat
tttacgaCGACTTTCTTATTTCAAAATGCTAAAGCTAACGCCATTAACTC
CCAACCCATATTATGTATAATCAGGTAATTAGAATTTATTTTAGGAGTAG
GGACCTAATATATATAGAggccaaattttctttgtaagtAGACAAGAGAA
GCTATTTTAACCTTCATCGATTTATTTTCACAATGTAAG Coding sequence (CDS) from alignment at sc0000291:85887..88075 >TCONS_00018236 ID=TCONS_00018236|Name=TCONS_00018236|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at sc0000291:85887..88075 (Clytia hemisphaerica)
AATTTGAGGATGTGCTGCTTATACTGTATCATGTGGATCGTATGTTTCCC
GTGTATTGCTTGGTATTGGAAACGTTGTGGAATCCCAATAATGAAGGAAG
AACGAAGGCGCACAAAGCAACATGATTTGTCGTTATCTGAAATTATTGAA
GAAACACAACAAGCAATACTGACTAGGGAAGAAATGTCAGAAATAGACGA
TGAATATCTCAATGAAGTTGTTCGACCTTTGGTATGTTTACTTGAGGAAA
ATATGGATTTTGAAGAGCTAGATATCTTCTTAAGTGGCAGTACCGCAGAA
CGCTTTTGTGTTCCAATGGCGAACAAAACAGTACCAGATTCTGTTCTCTT
TCAAGAATCTCATCCCCTGTTTAGTGATATGGACTATATGATTACGCCAA
GAACTTTATGTGCAAGTTTTACAGAGGATGATCAGCGCTTTTATGTTGAA
ACAAACGAAAACGAGCCTGATATGAGAATGccatatgttttgatttttga
taacgAACATGTCACATATCTAAACGCAAAGGCCGTGAAATTAAAAATCA
AGTCTTCCGTTGATAGCAAATTCAGGAATACAAAATATCTTAATCTTTTG
AAATGTAAACACCATATTGAAGGACAATCAGAGGTGACAGGCCCTGCTAT
CAAAATTGGAGGTAAAATTAAGTTTGATTACAAATTTAATGTTGATATAA
CCTTTGCTTTGAAATGTGTTCAATGGCCTGAACATTTAAGCGACTGGACT
CTACGCAGTAAGAAATGGCCAACTGTAGAGGACGTGGAACGAATTTCCGG
ATATGGTTGCCATTTTGTTCCAAAGTCTTCCGGTTGGGATAACAAGCTCA
AACAACCTCAAACCTACAACTGGcgtatttcattttcaaaagcagaagtt
gaactttcaaaattgattcccGAGAATGCACGCGCTTGTTTTCTATGTAT
GAAAATAATTCTTAAAGATTATATTTCCAGTATTAAACAATCCGTATCTG
GGTACGGGCTCAagacaattttatatttttctttagaaaaaagtgGGCCC
GAGTTTTGGGTTGAGAATGATATTGAAGTTTGCTTTAATTTTCTATTTGA
TTTATTTATGGATGCTTTAGATGGTAGATGTTGTCCACACTTTTGGCTAC
CTACAATCAATCTCTACAGGGACTTAACCAGTAATGACGTCAAAAGACTT
AtgagaaaaatgaataaaatcaaagaacATCCTGCAAGATATATCGAACG
ATTTCCTCAACAAATCAATAATGAAGAATCAACCATGTTACAtttatcaa
attaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018236-exon-sc0000291-1491911889:85887..88075 | TCONS_00018236-exon-sc0000291-1491911889:85887..88075 | Clytia hemisphaerica | exon |
| TCONS_00018236-exon-sc0000291-1510915933:85887..88075 | TCONS_00018236-exon-sc0000291-1510915933:85887..88075 | Clytia hemisphaerica | exon |
| TCONS_00018236-exon-sc0000291-1575043694:85887..88075 | TCONS_00018236-exon-sc0000291-1575043694:85887..88075 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000291 | supercontig | sc0000291:85887..88075 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
|
