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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018263 ID=TCONS_00018263|Name=TCONS_00018263|organism=Clytia hemisphaerica|type=transcript|length=1824bp
TTAgggaaaaaggggaaaaaagaagaatataaaatataaagaaagaagaa
gagatATCTTCTTTTTTGGGCTTTCTTGATGATCttttttttctggtttt
tcGAAATCGCATCAAAAAAGATAAGAGAATATTTTGGGGAAGACGTGATC
GTATCATAGCAATCCATAGATTTGATTTTGGACCCATATAGTTGTTTCTA
GAAGCTGATCAAAGACTTCCAACTACTATTACTTTGCTTTGGAATAACTA
AAGTACTTATCTTATCATCGTATCATCAAGCAAGGTAAAGCCTGGTCTCT
AAAttcacaacaaaatcaaacaaagagaCGACTACTTACCTGAATTGCTG
AGGATGTGAGGACGGATTTAGTACGCCGTGCAAGCCCTCTTTGTAGAAAG
GATTGATGTAATCAGgatttcgaaaaaaaaaagagaagaagaaaaCCACT
CGAAAAAATATTGCTCAAGAAAACACAAGATACGAAATTTTCTACTTCCA
TTAGAGTGACAAAGAGCATCCCAGTACCGACGAGATGGTTAGCGCATCGA
ACATTTTGATGATCTGTTTATTTATTACACTGGTACTACTCATGATtgtt
tacgccattttgaaatgTCGCGTCAAAAATGAATACATTCGAAAGTTGGA
ACAAGAAGGAGACCAATATTTGACGAAAAACGATTTCGCGAAATGTTTAG
AAGACAGTAGAGATCAAATGCTCGTTTATCTATGATGGACAAAAGAGCAA
TTTATAGTAGTTGAAGAGTTTCTTAAAACATGCTTTTCAAAACACAACTA
ATTGTTTGAAGATCGAATCAGGATGTCGTCGAGGTTCAATTATGCAATAC
GTTCATGGTTTATGCAGAGAACTATTTCATTTTAACAATCAATGAATAAA
ACATTGAACAGTTAAGTTTCTTGGAGTATGGTATGCTAACAAGCTATGTA
TACAGTGGTTGACCCCGAGGACGCTTTATCAAATTTGTAGCCCTGTTGAT
TATTTAAGTTCATATTTCATTGGGCGGTAATGAACTAATTTGCATATATT
TATAATGGAAGCTGAACAATATGATATTTACCGCGTTGTGAAACGTATAA
ACGTCTGCCTGTATATAAGATTTTGTGAATAGCACTCACTGCTTAGTGGC
ACACACAATTCATACCATCATGGGTAAGATTTAGCTGGGGATATCGAAAA
TGACAAAGCAAGGCTTTCAGTAGCTCTGGTCGAAACGGTAGTCAGCTGAA
TCCTTCAAAATTACTGATGAGAACACGTGTGGTTACAATAATACTTTact
gggataaattttcgcgtgcattcaatttcgcggttgagctcatccgcgaa
attttaagattttgagacagtatttttactatttttagcCTCCCTAATTG
TTGGAGTACGTATTATTAGCGCTtgtttgatgccagtaaacatgcaaaaa
aaattttatttgacaCTTTTTGAATTGTGTTTAAAAACATTTCGCGGATA
AATTTCCACTaggacttaatttcgcagatGACACTCAAATCTTCAAAATC
CACGAAATGTTATCGCATAAAAGTATTCTTTTGCTGCATTGTGTTTGTGA
TTTTCGATTGGAAAAAAGagtaaaaatgattttatttatattcGAGTTTT
CAACCAGACCCAATACCAAGTCCCAATATCATTAAAATCAGGTGTAATAA
AAAGCATTGTAAATTAAAACTGTATATAGTTTTTTAGGTTACTACTAATC
ATTTCTTGTTTAGGAAGGCGAGAAGTTTTGACTGTAATATAATAACATTT
TAAGTTGTTTGACTTAAAAATCCC Run BLAST on NCBI transcript from alignment at sc0000295:225769..230892+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018263 ID=TCONS_00018263|Name=TCONS_00018263|organism=Clytia hemisphaerica|type=transcript|length=5124bp|location=Sequence derived from alignment at sc0000295:225769..230892+ (Clytia hemisphaerica)
TTAgggaaaaaggggaaaaaagaagaatataaaatataaagaaagaagaa
gagatATCTTCTTTTTTGGGCTTTCTTGATGATCttttttttctggtttt
tcGAAATCGCATCAAAAAAGATAAGAGAATATTTTGGGGAAGACGTGATC
GTATCATAGCAATCCATAGATTTGATTTTGGACCCATATAGTTGTTTCTA
GAAGCTGATCAAAGACTTCCAACTACTATTACTTTGCTTTGGAATAACTA
AAGTACTTATCTTATCATCGTATCATCAAGCAAGGTAAAGCCTGGTCTCT
AAAttcacaacaaaatcaaacaaagagaCGACTACTTACCTGAATTGCTG
AGGATGTGAGGACGGATTTAGTACGCCGTGCAAGCCCTCTTTGTAGAAAG
GATTGATGTAATCAGGTAAGTTTTGCCACATATAGCCCCATAGTGAATAC
GTTCGTCTATTGAGCCTAAAAAGAAAGTTGAACATTTGAACTTGAACTCG
CTGATTCTTTCCATAAAAGCTGGGCCAACACCCTTCCTTTATTTTGTGAA
AAGGCTAAGGGCGCATATATCCTTGCTCTCCGCCATTTTGGTCTTGTGAC
ATAAACGAACCTGAAAGTTGGATTTGGAACGTTTCTTAAAATTCTATTTT
AACAGAATATCCTCGAATCTTGTTAGTAAACTCTtgtaattcatgatatt
atatTACCCTGAAAACGTTTTACCAATATGAAAGATTCGTATCAGAAGCT
AAAAGCCGAAAACCAAAAGCTCGCGCAAGTAATGACGCATCTTTTCCAGA
GTTTACtttgagaagtttgaattacgggagGGATGTATGACTGATTTTTA
TTGAGAACTTAATTCACTTTTCTAGCTCATTTTAGTCATTCAAATAAAGT
GGTCCGTGCTTAATGCTTGTTGCAAAGTCTTGAGTAAGTAGtacaacccg
ggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNccacgagtcccaggtagggtcgcaaaaacaccaa
aatagaaaaatcagtccctcgtagggtgcctttttttggaaaatttggga
aaaaagtagaaaatttgggaatttcagtcccattcagggtcacttttttc
gctaatttcgagtcccacgtagggtccatttttcgaacctcagcggagca
cccccgtcggtcgacaagggtagtacccccccgggagtACAACATTGTAG
ATTTCGTCAAATATTTCGTCAAATATTGTCAATTCTTCCCCGAGTGTGCC
CAGAAAGAAAATTACTGAATAAAACCATTCTGGTTCTTTGACGGAACTTC
GACTGAGTGTTTTGGACCTTTAACGACTttgtaaaataatatttttgatt
gccaTTTAGCATGGCTTCAAGTGTTAAAAGTTTCGGAAAATACACTGCAA
ATTACAGTTCGTTTGTTACATTTGTTGCCCGGTCTACATAAGTATCATTT
AAGAACATCTGTTGAATTTTTCAATATCGCATCATTGTCAAGTTTCCACA
ACCCGAATGCCAATAAGGCAAGCGAGTAATCGTTCAGGTCATAGAGAGCT
ATCGAAGTTAGAGGGAAACAGTTAGTTTGGCCAGTAGAGTAGTTCTAGTA
AAGATGCGAATGAGGTTCGAATTATATGTAGAGACTCGACTGTAGGAAAG
TcgtaaaaataagaaataaatgaTTTCAATTTTAAGAGGTGTCAAACAAA
AGTGGTTTGCTAAATGTTGTCCTTACCAGGATTTTTGTTCAAATCTTCTT
ACATAATTCAAGGAGGAAAACTGACCTCACAACAACACTCTATTAACCTT
TCACTGACCATAATTGTCCTAAATGACTGAGAAAACACACTTAGAGGTCA
TGAAGTAGGATGGCCTAAAGTGCGTCAAGGGGTTAAACTAAAACACAGTC
AAGTAGTAAATCGGATTCTCTTTGGAGAGAGGAAAAAAAGAGGTACTTGT
GAAATGTAGTTCTAGATATTCGTGACAAGTCTCACCTCAGTTTTTAAATA
GGACTCCTTTATTTAATTGCGTACTCCTAAACTGAAACCacaacaagaat
tttttttggagacttttgcttttatttttctaaatgaCGTAGAAAGGGTT
AAGGTTTTTGGTTTCAAAACATCCAAGTTCTTGATGGTTGGTGCTGAGAG
TATAATGTTTTATTTCTttggaaaaataaaatcttttgcaGACTTTGAAT
TCTGAGTGAGCTCACTGAACTTTTGTGAGGAGGATCTATTCAGGTCACTC
TTGGAGTCTCGGAGAAGTTTGAAGCGAAACAGATGAAGTTATTCCTCAAC
ATGTGAAGATAATTTTGAATTGTTGCTAGTTTTGATAGTTATATCGTGAA
ACCCGAACCNGAAACAGATGAAGTTATTCCTCAACATGTGAAGATAATTT
TGAATTGTTGCTAGTTTTGATAGTTATATCGCGAAACCCGAACCAATTTG
TTAAAATGGGTAAAATGACAGTACATAGATTGTTCGAACGATAGAAATTT
AGTATAGTTTCATGCGTGTAGCCTGTGCTATTTGGCCATCCATTATCTGT
ATTATTGAGTGTGGGAGACATAAGAATTGGTCGAAAAAGTCTAAAGTCTA
AAACCGTTCAAGCTTGAAACATGATAGTTTTGAAGATTCGAGTTATGATG
ACTCATCTGCAATGGAGAGAATTATTCTTTGGGACTTATAAGCTTTCTAA
ACAGATGATTGACGTAAAAAATGCTTGGTTAATCTAAGTGCGGAATCGTA
AAGCTATATCTACCGGTAGCCTTTGAAAAATGATAAACATTTTCTTGGTT
TTTCTGATTGAGATGATCTAGTTACTAAGTCGATTGTTGTGTTTCATAAA
CCTCTgataaaatcttttcaaatcgCCTTTCCAAGTTGATTGACATGATC
ACTGAACCAACTTTCAACTTTGCGTTGAAAGTAAAAAGGAAACAGTAACA
ACCATCTTAAATGTGTTTCATGTTGCTTCGGCCTTTGCCGACCTTCGCtc
gaaaaaagatatttgtaTCACAGATGGCTCTCGCCAATTCGAACTCGAAT
TCGAACTGGGAATCTAGTTTGTTCGAATTcaagagagattcgaattatag
aaagtattttaagagggtttctcctttACGGGGCTggaaaaaagttcgaa
ttatagagagattcGAATGAGTTTATTGTATCTCTCTTCCCAGCTGACTT
TTAGTACTTTATCTGTGTAATATCTCCTCGATCAGAATCAGAATCAAAAT
CAGCAGGATAATGATTACAGTATTTATCAATCAAGAGCATACATTCCGAA
AGGCTTCTGTTTTCTTGTATTCTAGTTAGCTGTTTTTGTCACATGATGCG
ATTCACCGATTATTCAACGTTACTAGAAAAGAGCTGGGTTCTAGAGAAGT
ATCAATTGGATTAGCATTATTCTAGTCCAAAGGTTTACTTTTTATACAGT
AAAAAGGGGAAGGCTCGTTCAAACAGGTTAAAATCTCACGTTaagaattt
tctattttgttttaggatttcgaaaaaaaaaagagaagaagaaaaCCACT
CGAAAAAATATTGCTCAAGAAAACACAAGATACGAAATTTTCTACTTCCA
TTAGAGTGACAAAGAGCATCCCAGTACCGACGAGATGGTTAGCGCATCGA
ACATTTTGATGATCTGTTTATTTATTACACTGGTACTACTCATGATtgtt
tacgccattttgaaatgTCGCGTCAAAAATGAATACATTCGAAAGTTGGA
ACAAGAAGGAGACCAATATTTGACGAAAAACGATTTCGCGAAATGTTTAG
AAGACAGTAGAGATCAAATGCTCGTTTATCTATGATGGACAAAAGAGCAA
TTTATAGTAGTTGAAGAGTTTCTTAAAACATGCTTTTCAAAACACAACTA
ATTGTTTGAAGATCGAATCAGGATGTCGTCGAGGTTCAATTATGCAATAC
GTTCATGGTTTATGCAGAGAACTATTTCATTTTAACAATCAATGAATAAA
ACATTGAACAGTTAAGTTTCTTGGAGTATGGTATGCTAACAAGCTATGTA
TACAGTGGTTGACCCCGAGGACGCTTTATCAAATTTGTAGCCCTGTTGAT
TATTTAAGTTCATATTTCATTGGGCGGTAATGAACTAATTTGCATATATT
TATAATGGAAGCTGAACAATATGATATTTACCGCGTTGTGAAACGTATAA
ACGTCTGCCTGTATATAAGATTTTGTGAATAGCACTCACTGCTTAGTGGC
ACACACAATTCATACCATCATGGGTAAGATTTAGCTGGGGATATCGAAAA
TGACAAAGCAAGGCTTTCAGTAGCTCTGGTCGAAACGGTAGTCAGCTGAA
TCCTTCAAAATTACTGATGAGAACACGTGTGGTTACAATAATACTTTact
gggataaattttcgcgtgcattcaatttcgcggttgagctcatccgcgaa
attttaagattttgagacagtatttttactatttttagcCTCCCTAATTG
TTGGAGTACGTATTATTAGCGCTtgtttgatgccagtaaacatgcaaaaa
aaattttatttgacaCTTTTTGAATTGTGTTTAAAAACATTTCGCGGATA
AATTTCCACTaggacttaatttcgcagatGACACTCAAATCTTCAAAATC
CACGAAATGTTATCGCATAAAAGTATTCTTTTGCTGCATTGTGTTTGTGA
TTTTCGATTGGAAAAAAGagtaaaaatgattttatttatattcGAGTTTT
CAACCAGACCCAATACCAAGTCCCAATATCATTAAAATCAGGTGTAATAA
AAAGCATTGTAAATTAAAACTGTATATAGTTTTTTAGGTTACTACTAATC
ATTTCTTGTTTAGGAAGGCGAGAAGTTTTGACTGTAATATAATAACATTT
TAAGTTGTTTGACTTAAAAATCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018263-exon-sc0000295-1491911889:225769..226183 | TCONS_00018263-exon-sc0000295-1491911889:225769..226183 | Clytia hemisphaerica | exon |
| TCONS_00018263-exon-sc0000295-1510915933:225769..226183 | TCONS_00018263-exon-sc0000295-1510915933:225769..226183 | Clytia hemisphaerica | exon |
| TCONS_00018263-exon-sc0000295-1575043694:225769..226183 | TCONS_00018263-exon-sc0000295-1575043694:225769..226183 | Clytia hemisphaerica | exon |
| TCONS_00018263-exon-sc0000295-1491911889:229484..230892 | TCONS_00018263-exon-sc0000295-1491911889:229484..230892 | Clytia hemisphaerica | exon |
| TCONS_00018263-exon-sc0000295-1510915933:229484..230892 | TCONS_00018263-exon-sc0000295-1510915933:229484..230892 | Clytia hemisphaerica | exon |
| TCONS_00018263-exon-sc0000295-1575043694:229484..230892 | TCONS_00018263-exon-sc0000295-1575043694:229484..230892 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000295 | supercontig | sc0000295:225769..230892 + |
Blast
The following BLAST results are available for this feature:
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