|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018264 ID=TCONS_00018264|Name=TCONS_00018264|organism=Clytia hemisphaerica|type=transcript|length=3453bpRun BLAST on NCBI protein sequence of TCONS_00018264-protein >TCONS_00018264-protein ID=TCONS_00018264-protein|Name=TCONS_00018264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp MEAISSATKPLEKRMFADYYGVNCTTYCKVEEGSNFICNKITGEKECFADRun BLAST on NCBI transcript from alignment at sc0000295:244373..250111+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018264 ID=TCONS_00018264|Name=TCONS_00018264|organism=Clytia hemisphaerica|type=transcript|length=5739bp|location=Sequence derived from alignment at sc0000295:244373..250111+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000295:244373..250111+ >TCONS_00018264 ID=TCONS_00018264|Name=TCONS_00018264|organism=Clytia hemisphaerica|type=CDS|length=5184bp|location=Sequence derived from alignment at sc0000295:244373..250111+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018264 vs. Swiss-Prot (Human)
Match: MEG11 (Multiple epidermal growth factor-like domains protein 11 OS=Homo sapiens GN=MEGF11 PE=2 SV=3) HSP 1 Score: 81.6481 bits (200), Expect = 5.995e-23 Identity = 87/395 (22.03%), Postives = 138/395 (34.94%), Query Frame = 3
Query: 1674 YGVNCTTYCKVEEGSNFICNKITGEKECFADY--------------YGMNCTTYCKVEDGSNFICNKITGA-------------KECFADYYGMNCTTNCKVEDGSNFICNKITG-------------EKECFADYYGVNCTTYCKVEEGSNFICNKITGEKECFVDYYGINCTTYCKVKD-----------GSNFICNKITGEKECFVDY-------------YGVNCTTYCKVEDGSNFICNKITGEKECFVDY-------------YGVNCTTYCKVEDGS-----NFICNLITG------EKECFVDYYGVNCTAYCKVKDGSNFICNKITGEKECFV-------------DYYGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINCT 2555
+G C+ +C G C+ TG EC Y +G CT C + + C+ +TGA + C YYG C C ++G++ C+ ITG C A YG NC++ C G C+ + G C + G++CT C + C+ I G C + +G+NC+ +C C+ +TG C + +G NC+ C E+G + C G ++ C +YG C C + S+ C+ I+G EC Y+G +C C + N C+ I G +CF + G +C+
Sbjct: 310 FGFQCSQHCDCHNGGQ--CSPTTGACECEPGYKGPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGAD--CHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGG--TCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHADG--CDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQDCAQLCSCAN--NGTCSPIDGSCQCFPGWIGKDCS 694 HSP 2 Score: 46.2098 bits (108), Expect = 5.995e-23 Identity = 39/163 (23.93%), Postives = 65/163 (39.88%), Query Frame = 2
Query: 1283 ADYYGVNCTTYCKVDDGSNFICNKITG-------------EKECFADYYGVNCTTYCKVKDGNNFICNKITGEKECFADY-------------YGMNCTTYCKVEDGSNFICNKITGE-------------KECFADYYGMNCTTNCKVEDGSNFICNKTTGE 1654
+D++G +C+ C+ +G+ +CN ITG E+ C +G C C+ + G + C+ GE C Y +G +C C ++G C+ ITGE + C +G NC+ +C G C+ TG+
Sbjct: 135 SDHWGPHCSNRCQCQNGA--LCNPITGACVCAAGFRGWRCEELCAPGTHGKGCQLPCQCRHGAS--CDPRAGECLCAPGYTGVYCEELCPPGSHGAHCELRCPCQNGG--TCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQ--CDHVTGQ 289 HSP 3 Score: 75.8702 bits (185), Expect = 1.761e-20 Identity = 85/392 (21.68%), Postives = 140/392 (35.71%), Query Frame = 3
Query: 1665 ADYYGVNCTTYCKVEEGSNFICNKITGEKECFADYYGMNCTTYCKVED-----------GSNFICNKITGAKECFADY-------------YGMNCTTNCKVEDGSNFICNKITGEKECFADY-------------YGVNCTTYCKVEEGS-----NFICNKITG------EKECFVDYYGINCTTYCKVKDGSNFICNKITGEKECFVD-------------YYGVNCTTYCKVEDGSNFICNKITGEKECFVDYYGVNCT---------------------TYCKVEDGSNFICNLITG---EKECFVDYYGVNCTAYCKVKDGSNFICNKITGEKECFVDYYGMNCTTYCKV-----------EDGSNFICNKITGEKECFTDYYGINC 2552
A YG NC++ C G C+ + G C + G++CT C + C+ I G+ C + +G+NC+ +C C+ +TG C A + +G NC+ C E G + C G ++ C +YG C C + S+ C+ I+G EC Y+G +C C + N C+ I G +CF + G +C+ C EDG+ TG + C ++G +C C+ ++G++ C+ I+G+ C + G +C C E +N C+ +TG C + GI C
Sbjct: 439 AGTYGPNCSSICSCNNGG--TCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHADG--CDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQDCAQLCSCAN--NGTCSPIDGSCQCFPGWIGKDCSQACPPGFWGPACFHACSCHNGASCSAEDGACHCTPGWTGLFCTQRCPAAFFGKDCGRVCQCQNGAS--CDHISGKCTCRTGFTGQHCEQRCAPGTFGYGCQQLCECMNNSTCDHVTGTCYCSPGFKGIRC 822 HSP 4 Score: 43.8986 bits (102), Expect = 1.761e-20 Identity = 36/145 (24.83%), Postives = 54/145 (37.24%), Query Frame = 2
Query: 1292 YGVNCTTYCKVDDGSNFICNKITGEKECFADY-------------YGVNCTTYCKVKDGNNFICNKITGEKECFADY--------------YGMNCTTYCKVEDGSNFICNKITGEKECFADYYGMNCTTNCKV---EDGSNFIC 1636
+G NC+ C G C+ +TG+ C A Y +G C+ +C +G C+ TG EC Y +G CT C + + C+ +TG C + G +C +C V DG C
Sbjct: 267 FGQNCSQDCPCHHGGQ--CDHVTGQCHCTAGYMGDRCQEECPFGSFGFQCSQHCDCHNGGQ--CSPTTGACECEPGYKGPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPC 407 HSP 5 Score: 88.9669 bits (219), Expect = 1.138e-17 Identity = 87/374 (23.26%), Postives = 134/374 (35.83%), Query Frame = 3
Query: 1665 ADYYGVNCTTYCKVEEGSNFICNKITGEKECFADYYGMNCTTYCKV---EDGSNFICNKITGA---------------------KECFADYYGMNCTTNCKVEDGSNFICNKITGE-------------KECFADYYGVNCTTYCKVEEGSNFICNKITGEKECFVDY-------------YGINCTTYCKVKDGSNFICNKITGEKECFVDYYGVNCTTYCKVEDGSNFICNKITGEKECFVDYYGVNCTTYCKVEDGSNFICNLITGE-------------KECFVDYYGVNCTAYCKVKDGSNFICNKITG-------------EKECFVDYYGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINCTL 2558
+D++G +C+ C+ + G+ +CN ITG C A + G C C G C GA + C +G +C C ++G C+ ITGE + C +G NC+ C G C+ +TG+ C Y +G C+ +C +G C+ TG EC Y G C E+ C +G CT C + + C+ +TG + C V YYG C C ++G++ C+ ITG C YG NC++ C +G C+ + G C + G++CTL
Sbjct: 135 SDHWGPHCSNRCQCQNGA--LCNPITGACVCAAGFRGWRCEELCAPGTHGKGCQLPCQCRHGASCDPRAGECLCAPGYTGVYCEELCPPGSHGAHCELRCPCQNGG--TCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQ--CDHVTGQCHCTAGYMGDRCQEECPFGSFGFQCSQHCDCHNGGQ--CSPTTGACECEPGYKGPRCQ------------------ERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGAD--CHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGG--TCSPVDGSCTCKEGWQGLDCTL 478 The following BLAST results are available for this feature:
BLAST of TCONS_00018264 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.