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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018354 ID=TCONS_00018354|Name=TCONS_00018354|organism=Clytia hemisphaerica|type=transcript|length=2048bpRun BLAST on NCBI protein sequence of TCONS_00018354-protein >TCONS_00018354-protein ID=TCONS_00018354-protein|Name=TCONS_00018354-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp MGQDYYAILYLTRSATDADIKKAYRKLALKYHPQRNLEPGADHHFKQVAERun BLAST on NCBI transcript from alignment at sc0000297:83628..100656+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018354 ID=TCONS_00018354|Name=TCONS_00018354|organism=Clytia hemisphaerica|type=transcript|length=17029bp|location=Sequence derived from alignment at sc0000297:83628..100656+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000297:83628..100656+ >TCONS_00018354 ID=TCONS_00018354|Name=TCONS_00018354|organism=Clytia hemisphaerica|type=CDS|length=8478bp|location=Sequence derived from alignment at sc0000297:83628..100656+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018354 vs. Swiss-Prot (Human)
Match: DJB13 (DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=1 SV=1) HSP 1 Score: 409.068 bits (1050), Expect = 4.155e-137 Identity = 182/314 (57.96%), Postives = 252/314 (80.25%), Query Frame = 3
Query: 744 MGQDYYAILYLTRSATDADIKKAYRKLALKYHPQRNLEPGADHHFKQVAEAYDILSNCQRRALYDQFGEEGLKNGVPTT--TEGEYTKGYVFHGDPDRVFKEFFGGDNPYSELYEVSPHEIDMGFGGINGRGRQKQDPTIERDLFLTLEEVFKGCTKKMKISRRVMNEDGHTSSVRDKILTINVKPGWRSGTRITFPKEGDQGPNNIPADIVFVVKDKPHQIFKREDDDIVYTANVPLEKALVGCIVDVPTLDNRIISIPVNDIVHPGYLKRVGNEGMPISKTPNKRGDLVIAFDISFPKHLSTEQKSLISQAL 1679
MGQDYY++L +TR++ DA IK+AYR+LALK+HP ++ EP + F+Q+AEAYD+LS+ +R +YD+FGEEGLK G+P ++ +T GYVFHG P++VF EFFGG+NP+SE ++ E+D+ FGG+ GRG +KQDP +ERDL+L+LE++F GCTKK+KISRRV+NEDG++S+++DKILTI+VKPGWR GTRITF KEGDQGPN IPADI+F+VK+K H F+RE+D++ + +PL KAL C V+V TLD+R+++IP+NDI+HP Y K+V EGMP+ + P K+GDL I FDI FP L+ ++K ++ QAL
Sbjct: 1 MGQDYYSVLGITRNSEDAQIKQAYRRLALKHHPLKSNEPSSAEIFRQIAEAYDVLSDPMKRGIYDKFGEEGLKGGIPLEFGSQTPWTTGYVFHGKPEKVFHEFFGGNNPFSEFFDAEGSEVDLNFGGLQGRGVKKQDPQVERDLYLSLEDLFFGCTKKIKISRRVLNEDGYSSTIKDKILTIDVKPGWRQGTRITFEKEGDQGPNIIPADIIFIVKEKLHPRFRRENDNLFFVNPIPLGKALTCCTVEVRTLDDRLLNIPINDIIHPKYFKKVPGEGMPLPEDPTKKGDLFIFFDIQFPTRLTPQKKQMLRQAL 314 The following BLAST results are available for this feature:
BLAST of TCONS_00018354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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