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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018379 ID=TCONS_00018379|Name=TCONS_00018379|organism=Clytia hemisphaerica|type=transcript|length=1289bp
AAAGGTTGAATGGTTTTCTTCAGACCAAAAAGTCTCAATAATGTCATACA
AAATTCTGTCTTTTACTCACCAAAAATAATTATGCTTAGAACTTTAATCC
GTTTCATATTTTAGTTCCTTATTAAAAACCAATTTATTAATATGGCATTG
AGATTTGCATGCTTTATATCATCATGTCGGGAAGGAAGAATGGCAGACAG
AATGGTCAAACTCATTCAAGCCCAATTCAATCAAACCATGCAGCCAAAGG
GACATCAACTTGAACTGATAGATCCTGTCAAGTATGACTTACCGCTGTTG
AAAAAGCCTTTACACTTCTACAAAGATCGTTCAGAGGCTCCTGAGATTCT
TCAaacattgaatgaaaaagtggAACAATCGGATTGTTTCCTTATCTTAA
CTGCTGAATACAACATGAATTTACCTCCTGCACTCACCAACCTAATGTCC
CAGTTACCACCACCCAGTTTCGAGTATAAGCCAAGTGGATTGATAAGTTA
TACCCTTGGAACAAGAGGTGGACTAGCTGCTTGTGTTGCTGCAAGACCAT
ATTTGGCAGAACTTGGTTGTCTACCAGTCAAGCATATGACTACTGTTTCC
TCTGTGCACCAAGAGGTGAACGAAGATGGAAGTACTGAGAACCATTTTAT
TACAGAGAGTTTAGATGATCTTTTTCAACAAGTGGCTTGGTGGGGTGAAG
CAACCAAATTAAAACGTCACACTGATGGAGTACCAGCAAAGAAAGGATAC
TTCTAAATGGACTACTTTTATTTCAGCTAGCTAGATTATTTATTATTAGA
CTTGGTGACTAGATAGCTACAACATTCTACTACAGCCCTTTAACCCCTAA
TAGCTGTATCACTTAATCTAAATTGCACCTTTCATGCTTCTTAATAAGTT
TAGGGATTGTTTCCTCTGTGTATCACTATTTGGATCGATCTGTAATGATT
TTGGGTTTGATTGGTTTGCTTTTATTATTATTGCACGATtaccaattttg
aaaatatcataTTAAGTATGGATTTTTTTTGTACCATGATTTTGTAAAGC
ACTCTAgtttgtaaatttagaaattatattgaaatGAATATTTACGATTA
TATACATATGTGACATACTCATACATTTATACATCTCAGATTGatgatat
tttgttttaaaagtaaaatttggtTGAATGTTATGTCCTAGACCTAACAG
GGGAAGGGGGTGTCTCTTAATACTTTTTTTACAGCCCTTCTTTctctgtt
tttgtttgttttaatctACAAacgagaaaagtttttttc Run BLAST on NCBI protein sequence of TCONS_00018379-protein >TCONS_00018379-protein ID=TCONS_00018379-protein|Name=TCONS_00018379-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MALRFACFISSCREGRMADRMVKLIQAQFNQTMQPKGHQLELIDPVKYDL
PLLKKPLHFYKDRSEAPEILQTLNEKVEQSDCFLILTAEYNMNLPPALTN
LMSQLPPPSFEYKPSGLISYTLGTRGGLAACVAARPYLAELGCLPVKHMT
TVSSVHQEVNEDGSTENHFITESLDDLFQQVAWWGEATKLKRHTDGVPAK
KGYF Run BLAST on NCBI transcript from alignment at sc0000297:309848..311743+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018379 ID=TCONS_00018379|Name=TCONS_00018379|organism=Clytia hemisphaerica|type=transcript|length=1896bp|location=Sequence derived from alignment at sc0000297:309848..311743+ (Clytia hemisphaerica)
AAAGGTTGAATGGTTTTCTTCAGACCAAAAAGTCTCAATAATGTCATACA
AAATTCTGTCTTTTACTCACCAAAAATAATTATGCTTAGAACTTTAATCC
GTTTCATATTTTAGTTCCTTATTAAAAACCAATTTATTAATATGGCATTG
AGATTTGCATGCTTTATATCATCATGTCGGGAAGGAAGAATGGCAGACAG
AATGGTCAAACTCATTCAAGCCCAATTCAATCAAACCATGCAGCCAAAGG
GACATCAACTTGAACTGATAGGTTTGTTGCCTTTTCATTAAGATGCTCCA
TTGTAAAGAATCACCATAAGAGAATGAATCATGAATTGAACCATCTCTTT
CAATTTCAGATCCTGTCAAGTATGACTTACCGCTGTTGAAAAAGCCTTTA
CACTTCTACAAAGATCGTTCAGAGGCTCCTGAGATTCTTCAaacattgaa
tgaaaaagtggAACAATCGGATTGTTTCCTTATCTTAACTGCTGAATACA
ACATGAATTTACCTCCTGCACTCACCAACCTAATGTCCCAGTTACCACCA
CCCAGGTAtactaaaaataaaagataatGAAAGTTACAACAGTTTTCAAC
aacattttaataattttgtactattttttaTACACTGTTTGTTACTCACG
TACAATCTTCAGGCTATGCAGTGtatcaaataaatttgaaaGTTGTGCAA
ATTTCACACCATTTATCGTTTTTTAGTTTCGAGTATAAGCCAAGTGGATT
GATAAGTTATACCCTTGGAACAAGAGGTGGACTAGCTGCTTGTGTTGCTG
CAAGACCATATTTGGCAGAACTTGGTTGTCTACCAGTCAAGCATATGACT
ACTGTTTCCTCTGTAAGAATTATCTCATCTTCATTACTTCATTTCAATTG
ATATTTCTTTTCCATTCTTCTAGGATCCTAGGATATTTCTTCCTCTAGTC
CTAAACGAGAGATGTCCTGTGAGTTGAGAAAAACTTAATtgctttccttt
ttcttttgcaTCATATATATAATATTGTTTATATTTGGAATGAGATAATC
TGAGAGTAACTTatcatcattttcactgttTCTAATTTTCGAGCTGATTT
ACTTCGAGATCAATTTTCAAGCCATTACTTAACTATATATCTTTCAAGTC
CATTACCAGTGATACCACAATATTTACAGTAGgtttctttcaatattttt
cactttgtaGGTGCACCAAGAGGTGAACGAAGATGGAAGTACTGAGAACC
ATTTTATTACAGAGAGTTTAGATGATCTTTTTCAACAAGTGGCTTGGTGG
GGTGAAGCAACCAAATTAAAACGTCACACTGATGGAGTACCAGCAAAGAA
AGGATACTTCTAAATGGACTACTTTTATTTCAGCTAGCTAGATTATTTAT
TATTAGACTTGGTGACTAGATAGCTACAACATTCTACTACAGCCCTTTAA
CCCCTAATAGCTGTATCACTTAATCTAAATTGCACCTTTCATGCTTCTTA
ATAAGTTTAGGGATTGTTTCCTCTGTGTATCACTATTTGGATCGATCTGT
AATGATTTTGGGTTTGATTGGTTTGCTTTTATTATTATTGCACGATtacc
aattttgaaaatatcataTTAAGTATGGATTTTTTTTGTACCATGATTTT
GTAAAGCACTCTAgtttgtaaatttagaaattatattgaaatGAATATTT
ACGATTATATACATATGTGACATACTCATACATTTATACATCTCAGATTG
atgatattttgttttaaaagtaaaatttggtTGAATGTTATGTCCTAGAC
CTAACAGGGGAAGGGGGTGTCTCTTAATACTTTTTTTACAGCCCTTCTTT
ctctgtttttgtttgttttaatctACAAacgagaaaagtttttttc Coding sequence (CDS) from alignment at sc0000297:309848..311743+ >TCONS_00018379 ID=TCONS_00018379|Name=TCONS_00018379|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at sc0000297:309848..311743+ (Clytia hemisphaerica)
ATGGCATTGAGATTTGCATGCTTTATATCATCATGTCGGGAAGGAAGAAT
GGCAGACAGAATGGTCAAACTCATTCAAGCCCAATTCAATCAAACCATGC
AGCCAAAGGGACATCAACTTGAACTGATAGATCCTGTCAAGTATGACTTA
CCGCTGTTGAAAAAGCCTTTACACTTCTACAAAGATCGTTCAGAGGCTCC
TGAGATTCTTCAaacattgaatgaaaaagtggAACAATCGGATTGTTTCC
TTATCTTAACTGCTGAATACAACATGAATTTACCTCCTGCACTCACCAAC
CTAATGTCCCAGTTACCACCACCCAGTTTCGAGTATAAGCCAAGTGGATT
GATAAGTTATACCCTTGGAACAAGAGGTGGACTAGCTGCTTGTGTTGCTG
CAAGACCATATTTGGCAGAACTTGGTTGTCTACCAGTCAAGCATATGACT
ACTGTTTCCTCTGTGCACCAAGAGGTGAACGAAGATGGAAGTACTGAGAA
CCATTTTATTACAGAGAGTTTAGATGATCTTTTTCAACAAGTGGCTTGGT
GGGGTGAAGCAACCAAATTAAAACGTCACACTGATGGAGTACCAGCAAAG
AAAGGATACTTCTAAATGGCATTGAGATTTGCATGCTTTATATCATCATG
TCGGGAAGGAAGAATGGCAGACAGAATGGTCAAACTCATTCAAGCCCAAT
TCAATCAAACCATGCAGCCAAAGGGACATCAACTTGAACTGATAGATCCT
GTCAAGTATGACTTACCGCTGTTGAAAAAGCCTTTACACTTCTACAAAGA
TCGTTCAGAGGCTCCTGAGATTCTTCAaacattgaatgaaaaagtggAAC
AATCGGATTGTTTCCTTATCTTAACTGCTGAATACAACATGAATTTACCT
CCTGCACTCACCAACCTAATGTCCCAGTTACCACCACCCAGTTTCGAGTA
TAAGCCAAGTGGATTGATAAGTTATACCCTTGGAACAAGAGGTGGACTAG
CTGCTTGTGTTGCTGCAAGACCATATTTGGCAGAACTTGGTTGTCTACCA
GTCAAGCATATGACTACTGTTTCCTCTGTGCACCAAGAGGTGAACGAAGA
TGGAAGTACTGAGAACCATTTTATTACAGAGAGTTTAGATGATCTTTTTC
AACAAGTGGCTTGGTGGGGTGAAGCAACCAAATTAAAACGTCACACTGAT
GGAGTACCAGCAAAGAAAGGATACTTCTAAATGGCATTGAGATTTGCATG
CTTTATATCATCATGTCGGGAAGGAAGAATGGCAGACAGAATGGTCAAAC
TCATTCAAGCCCAATTCAATCAAACCATGCAGCCAAAGGGACATCAACTT
GAACTGATAGATCCTGTCAAGTATGACTTACCGCTGTTGAAAAAGCCTTT
ACACTTCTACAAAGATCGTTCAGAGGCTCCTGAGATTCTTCAaacattga
atgaaaaagtggAACAATCGGATTGTTTCCTTATCTTAACTGCTGAATAC
AACATGAATTTACCTCCTGCACTCACCAACCTAATGTCCCAGTTACCACC
ACCCAGTTTCGAGTATAAGCCAAGTGGATTGATAAGTTATACCCTTGGAA
CAAGAGGTGGACTAGCTGCTTGTGTTGCTGCAAGACCATATTTGGCAGAA
CTTGGTTGTCTACCAGTCAAGCATATGACTACTGTTTCCTCTGTGCACCA
AGAGGTGAACGAAGATGGAAGTACTGAGAACCATTTTATTACAGAGAGTT
TAGATGATCTTTTTCAACAAGTGGCTTGGTGGGGTGAAGCAACCAAATTA
AAACGTCACACTGATGGAGTACCAGCAAAGAAAGGATACTTCTAAATGGC
ATTGAGATTTGCATGCTTTATATCATCATGTCGGGAAGGAAGAATGGCAG
ACAGAATGGTCAAACTCATTCAAGCCCAATTCAATCAAACCATGCAGCCA
AAGGGACATCAACTTGAACTGATAGATCCTGTCAAGTATGACTTACCGCT
GTTGAAAAAGCCTTTACACTTCTACAAAGATCGTTCAGAGGCTCCTGAGA
TTCTTCAaacattgaatgaaaaagtggAACAATCGGATTGTTTCCTTATC
TTAACTGCTGAATACAACATGAATTTACCTCCTGCACTCACCAACCTAAT
GTCCCAGTTACCACCACCCAGTTTCGAGTATAAGCCAAGTGGATTGATAA
GTTATACCCTTGGAACAAGAGGTGGACTAGCTGCTTGTGTTGCTGCAAGA
CCATATTTGGCAGAACTTGGTTGTCTACCAGTCAAGCATATGACTACTGT
TTCCTCTGTGCACCAAGAGGTGAACGAAGATGGAAGTACTGAGAACCATT
TTATTACAGAGAGTTTAGATGATCTTTTTCAACAAGTGGCTTGGTGGGGT
GAAGCAACCAAATTAAAACGTCACACTGATGGAGTACCAGCAAAGAAAGG
ATACTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018379-exon-sc0000297-1491911889:309848..310118 | TCONS_00018379-exon-sc0000297-1491911889:309848..310118 | Clytia hemisphaerica | exon |
| TCONS_00018379-exon-sc0000297-1510915933:309848..310118 | TCONS_00018379-exon-sc0000297-1510915933:309848..310118 | Clytia hemisphaerica | exon |
| TCONS_00018379-exon-sc0000297-1575043694:309848..310118 | TCONS_00018379-exon-sc0000297-1575043694:309848..310118 | Clytia hemisphaerica | exon |
| TCONS_00018379-exon-sc0000297-1491911889:310207..310402 | TCONS_00018379-exon-sc0000297-1491911889:310207..310402 | Clytia hemisphaerica | exon |
| TCONS_00018379-exon-sc0000297-1510915933:310207..310402 | TCONS_00018379-exon-sc0000297-1510915933:310207..310402 | Clytia hemisphaerica | exon |
| TCONS_00018379-exon-sc0000297-1575043694:310207..310402 | TCONS_00018379-exon-sc0000297-1575043694:310207..310402 | Clytia hemisphaerica | exon |
| TCONS_00018379-exon-sc0000297-1491911889:310574..310709 | TCONS_00018379-exon-sc0000297-1491911889:310574..310709 | Clytia hemisphaerica | exon |
| TCONS_00018379-exon-sc0000297-1510915933:310574..310709 | TCONS_00018379-exon-sc0000297-1510915933:310574..310709 | Clytia hemisphaerica | exon |
| TCONS_00018379-exon-sc0000297-1575043694:310574..310709 | TCONS_00018379-exon-sc0000297-1575043694:310574..310709 | Clytia hemisphaerica | exon |
| TCONS_00018379-exon-sc0000297-1491911889:311058..311743 | TCONS_00018379-exon-sc0000297-1491911889:311058..311743 | Clytia hemisphaerica | exon |
| TCONS_00018379-exon-sc0000297-1510915933:311058..311743 | TCONS_00018379-exon-sc0000297-1510915933:311058..311743 | Clytia hemisphaerica | exon |
| TCONS_00018379-exon-sc0000297-1575043694:311058..311743 | TCONS_00018379-exon-sc0000297-1575043694:311058..311743 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000297 | supercontig | sc0000297:309848..311743 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029039 | Flavoprotein-like_dom |
| IPR005025 | FMN_Rdtase-like |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
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