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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018400 ID=TCONS_00018400|Name=TCONS_00018400|organism=Clytia hemisphaerica|type=transcript|length=1281bp
ATAAAATTTCAAcgttatatttgaaatatttttcaagttattcaagaaat
actatatttttgagttcactaaatgtcacactatttttgaacatGATCTC
TGAGCAACAAAGATTTATTTGAATCAAGTCAAAAGGTCAAACTCCATCAA
AAAGAGGAGGAGATCGCCACAAAACAAAAGGAGCTGAATTTGATGAGCTC
AATATTTTCTCCAACCAACATCTCGAAGAAAAAGCAAAAGCTCAAACAAA
TGGAGGCTGAAGCTACAAAACTAAGACAAAATCGAATCTACACCTTCGAC
ATGCTGTTCAAGGATTGGTCAGCAAATGAACAGTTCTTGATTGATTATCC
AGACATCACAACTGTATTGGAACTAGCTGCTATCATTCCACCCTCGACGG
CAAAAGTTGAGAGGTCATTTTCTCTAATGAACCTGATCCTGACTCCCCAA
AGAAAGAGACTACTCCCGGAATACTTAAGCCATTGCATGCGAATCTGTAA
GTTTCGCAAACTTACAGACGCAgactttgatgaaattttgaaacgTTGGC
TAGTTGGAGAAGGCACTGAAACTGCCATGCGTAGAGTAGCATGCCGTTTG
TAAAAGTTTCTCATATATTTTAGTCTTTATattttttggtcataaaaaga
gTTTTCGATTTTATGTTTTCTTCTCAATTTTGCAGCAAANAAACTGCCAC
GCGTAGAGTAGCATGCCGTTTGTAAAAGTTTCTCATATATTTTAGTCTTT
ATattttttggtcataaaaagagTTTTCGATTTTATGTTTTCTTCTCAAT
TTTGCAGCAAATGCTAGATTTTCCTAGTTTACTCTATATTGAGTAGTTTT
GTTTGATTTATTTAACACAACATTTGAGTAGTTTTGTTATATTTTCGTCG
GTAAAATGAGTTTTcgattttatctttatttttttcatgttaCAGCCAAC
GATGAGTTTCCTAGTTTACTCTATATTGAGTAGTTTTGTTTGAttctttt
ttaacatttgaGTAGTCTTGTTATATTGTAGcactttattttacaaaaaa
aacaaaattttatggGGGCTTTGCCCCCTAGACCCCCAATTTGCCTGGTA
TAAActatcaaaaaatacaaattttcataAGCAACCAGGTTTCTAAGGCT
CAAACCTTCAAATTAGCCaatttttgtactattttgtaacataaaagctt
tttagatcaTCTATCATATTAGATTATCTATCATATGTATTTGAGACACA
CTAATTGTTATGTACTGTTTACCATAAAATC Run BLAST on NCBI protein sequence of TCONS_00018400-protein >TCONS_00018400-protein ID=TCONS_00018400-protein|Name=TCONS_00018400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MSSIFSPTNISKKKQKLKQMEAEATKLRQNRIYTFDMLFKDWSANEQFLI
DYPDITTVLELAAIIPPSTAKVERSFSLMNLILTPQRKRLLPEYLSHCMR
ICKFRKLTDADFDEILKRWLVGEGTETAMRRVACRL Run BLAST on NCBI transcript from alignment at sc0000297:89161..90441 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018400 ID=TCONS_00018400|Name=TCONS_00018400|organism=Clytia hemisphaerica|type=transcript|length=1281bp|location=Sequence derived from alignment at sc0000297:89161..90441 (Clytia hemisphaerica)
GATTTTATGGTAAACAGTACATAACAATTAGTGTGTCTCAAATACATATG
ATAGATAATCTAATATGATAGAtgatctaaaaagcttttatgttacaaaa
tagtacaaaaattGGCTAATTTGAAGGTTTGAGCCTTAGAAACCTGGTTG
CTtatgaaaatttgtattttttgatagTTTATACCAGGCAAATTGGGGGT
CTAGGGGGCAAAGCCCccataaaattttgttttttttgtaaaataaagtg
CTACAATATAACAAGACTACtcaaatgttaaaaaagaaTCAAACAAAACT
ACTCAATATAGAGTAAACTAGGAAACTCATCGTTGGCTGtaacatgaaaa
aaataaagataaaatcgAAAACTCATTTTACCGACGAAAATATAACAAAA
CTACTCAAATGTTGTGTTAAATAAATCAAACAAAACTACTCAATATAGAG
TAAACTAGGAAAATCTAGCATTTGCTGCAAAATTGAGAAGAAAACATAAA
ATCGAAAActctttttatgaccaaaaaatATAAAGACTAAAATATATGAG
AAACTTTTACAAACGGCATGCTACTCTACGCGTGGCAGTTTNTTTGCTGC
AAAATTGAGAAGAAAACATAAAATCGAAAActctttttatgaccaaaaaa
tATAAAGACTAAAATATATGAGAAACTTTTACAAACGGCATGCTACTCTA
CGCATGGCAGTTTCAGTGCCTTCTCCAACTAGCCAAcgtttcaaaatttc
atcaaagtcTGCGTCTGTAAGTTTGCGAAACTTACAGATTCGCATGCAAT
GGCTTAAGTATTCCGGGAGTAGTCTCTTTCTTTGGGGAGTCAGGATCAGG
TTCATTAGAGAAAATGACCTCTCAACTTTTGCCGTCGAGGGTGGAATGAT
AGCAGCTAGTTCCAATACAGTTGTGATGTCTGGATAATCAATCAAGAACT
GTTCATTTGCTGACCAATCCTTGAACAGCATGTCGAAGGTGTAGATTCGA
TTTTGTCTTAGTTTTGTAGCTTCAGCCTCCATTTGTTTGAGCTTTTGCTT
TTTCTTCGAGATGTTGGTTGGAGAAAATATTGAGCTCATCAAATTCAGCT
CCTTTTGTTTTGTGGCGATCTCCTCCTCTTTTTGATGGAGTTTGACCTTT
TGACTTGATTCAAATAAATCTTTGTTGCTCAGAGATCatgttcaaaaata
gtgtgacatttagtgaactcaaaaatatagtatttcttgaataacttgaa
aaatatttcaaatataacgTTGAAATTTTAT Coding sequence (CDS) from alignment at sc0000297:89161..90441 >TCONS_00018400 ID=TCONS_00018400|Name=TCONS_00018400|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at sc0000297:89161..90441 (Clytia hemisphaerica)
TTACAAACGGCATGCTACTCTACGCATGGCAGTTTCAGTGCCTTCTCCAA
CTAGCCAAcgtttcaaaatttcatcaaagtcTGCGTCTGTAAGTTTGCGA
AACTTACAGATTCGCATGCAATGGCTTAAGTATTCCGGGAGTAGTCTCTT
TCTTTGGGGAGTCAGGATCAGGTTCATTAGAGAAAATGACCTCTCAACTT
TTGCCGTCGAGGGTGGAATGATAGCAGCTAGTTCCAATACAGTTGTGATG
TCTGGATAATCAATCAAGAACTGTTCATTTGCTGACCAATCCTTGAACAG
CATGTCGAAGGTGTAGATTCGATTTTGTCTTAGTTTTGTAGCTTCAGCCT
CCATTTGTTTGAGCTTTTGCTTTTTCTTCGAGATGTTGGTTGGAGAAAAT
ATTGAGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018400-exon-sc0000297-1491911889:89161..90441 | TCONS_00018400-exon-sc0000297-1491911889:89161..90441 | Clytia hemisphaerica | exon |
| TCONS_00018400-exon-sc0000297-1510915933:89161..90441 | TCONS_00018400-exon-sc0000297-1510915933:89161..90441 | Clytia hemisphaerica | exon |
| TCONS_00018400-exon-sc0000297-1575043694:89161..90441 | TCONS_00018400-exon-sc0000297-1575043694:89161..90441 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000297 | supercontig | sc0000297:89161..90441 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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