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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018414 ID=TCONS_00018414|Name=TCONS_00018414|organism=Clytia hemisphaerica|type=transcript|length=1505bp
GTTGTTATGGTGAGATGATGTAAgaaatatgattgataaacaTCATTGTG
ATTTTAATATCGTTGAAAAGAGCATTATCTtcctttttgagattttcttg
cTTTGATTTGTGAACAGTATACAGTACAGTTTATTAAGCTAATATACAAA
GCAGAGTGCATTCATCTCATCGGACAAAAAAGTGACAAAGCCCAAAAACA
AGATCCtcatttctttgtttctttgtttCATGTTGAGGGACAGACGTTCT
AAGACAGGAAAGATTGCTAATCACTAGTAGAGAAGAGAAAGCAACTGCTC
AATGACATGAGTTTCAAAGCAGAATTTAAGCTTGAAAAGCTCAAATTTAA
ACATGACTCCATTGAAGACTTTTATACCCTGAGGTGTTGTGGCGTTTCGA
AACATCTTTGGTTGTTGCGATTGTTATTTGCTTTGTATGCACTGGCTATA
CTCATCCATTCAGCTGTTGCATTCCATACTCAATACTGGGCAATATTTCT
AACCCAATGGGGACATGTTGTTTCTACTATTTACCTCTGTACCGGCTCTG
TGTTATCCATTTATTATACATTCCAAAAGTCAAATATTATTGTCAGCAAC
AAAGCTGATTTTGAACTCTCCTCCCCTGTGACGGACATGCACGATAAAGT
TGTCTTCAGAGAGATATCAGTCTCTAACATGGTACCCAAAAAGGTGCGTT
TCTTTTGGCTTGTAGCCAATATGTCATATGTTATTGGTGGACTTATCATC
ATCCTGTACTGGGGATTCGTACACCAAGATCACTTCTTGGATGGTGCAGA
TGCCGAGTTTGCAAACATCAACTTGCATGGAGTTGTATATGGTCTGGTTG
TCATCGATTTCCTTCTGAGTGGAATACCTATCCGCATCTTACATGGAGTG
TATCCCATTCTATTTGGTCTCACCTATGGTGTATTCTCTGCAATCTTTAC
CTTATCAACCAAACGTGCTGTCTACCCTGTCTTGAAGTGGCATACACATG
CTGTTCAAgctttgatttttagtttgatgGCTCTGGGTGTTGTGATAGtc
gttcaaatatttttctatggaGTTCACAGATTGAAGAGGAGAGTGCGATC
GAGAACGATGACCATGCCTTAGGTTTCTCTAAATTCTATTAATTGAGAGC
CATGGTATTGTCTTTCTCTAATACAGTAGATAACATGAACGAACTGCTTT
ATTTAACACCATTGAGATCAAGGTGGGAAAATGTATTTAAAGATGATTTT
TATTTAGTTTCAcaagctttttatttttttgcacaataatATGATATTTT
ATTATCAGTTAGTCATGTTGTtaatatatttcattttatcTTGATATACA
CCATTCATTTTTATTGTAAGTGACAATATATTTCATTGTTGTGTGTAGCC
TTGTAGATAATTCTTTCATTCGTCATTTTAGacattcttttcaaatttaa
atagTGTCTAATACCCGGGGGGTAGTAGGTTTGcaagatgacgggtatgt
ccgag Run BLAST on NCBI protein sequence of TCONS_00018414-protein >TCONS_00018414-protein ID=TCONS_00018414-protein|Name=TCONS_00018414-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
MSFKAEFKLEKLKFKHDSIEDFYTLRCCGVSKHLWLLRLLFALYALAILI
HSAVAFHTQYWAIFLTQWGHVVSTIYLCTGSVLSIYYTFQKSNIIVSNKA
DFELSSPVTDMHDKVVFREISVSNMVPKKVRFFWLVANMSYVIGGLIIIL
YWGFVHQDHFLDGADAEFANINLHGVVYGLVVIDFLLSGIPIRILHGVYP
ILFGLTYGVFSAIFTLSTKRAVYPVLKWHTHAVQALIFSLMALGVVIVVQ
IFFYGVHRLKRRVRSRTMTMP Run BLAST on NCBI transcript from alignment at sc0000300:56592..60126+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018414 ID=TCONS_00018414|Name=TCONS_00018414|organism=Clytia hemisphaerica|type=transcript|length=3535bp|location=Sequence derived from alignment at sc0000300:56592..60126+ (Clytia hemisphaerica)
GTTGTTATGGTGAGATGATGTAAgaaatatgattgataaacaTCATTGTG
ATTTTAATATCGTTGAAAAGAGCATTATCTtcctttttgagattttcttg
cTTTGATTTGTGAACAGTATACAGTACAGTTTATTAAGCTAATATACAAA
GCAGAGTGCATTCATCTCATCGGACAAAAAAGTGACAAAGCCCAAAAACA
AGATCCtcatttctttgtttctttgtttCATGTTGAGGGACAGACGTTCT
AAGACAGGAAAGATTGCTAATCACTAGTAGAGAAGAGAAAGCAACTGCTC
AATGACATGAGTTTCAAAGCAGAATTTAAGCTTGAAAAGCTCAAATTTAA
ACATGACTCCATTGAAGACTTTTATACCCTGAGGGTAGGTgaattttttc
atatattttgaCTGTCATCAACCTAACAGAATTTCTGTAAACTTCTTCTC
ATTTAACTTATGGCATGCTGGATGCAAAACAAATACACTTCTTTTaatac
ttctttttttttacatccAACCTTACAGTATGTGTTTATATACACAATTT
GAATGTctcatataaaaatgaaaagggGAAAAGGGAAGACGACCCTGACA
GTCCGGCATTTTGTCCGGTGCCAAGGAATATCCCTCAGCCACACCAGATA
CGTGTGTTTCGAAAATAATGCGCACCGGACTCTCAAGTCCGGTGCTGAGA
TTGTCTGGTGTTAAAAAGTATCCTCATCCGACACCAGACTTTCCGGTGTA
GTCCAGTACGTTGGCAGAGACGCAGGGAAACTTATATCTGGATCCTAGGA
AATATGAATAAATCTGGCAATTTTTTACCAATTGACCAATAGACCTTTGG
CTAGTgaggatgtcatgttgaataattaaaaactacATCACTAAAACAAT
AACACATTAACGCATAATTACCTATGGTAGTTGTGTATTAACATTTTCTT
ATCATTGACAATGGAACCAATCTATCCAGAATTTGCTTTCAATTAAATTC
AATCAtcaattgcgtttgacaatcaaAATTCCAATCGTTCCATTgcattt
gattggttcgatcaTCAATTCTGCTCGATTCAAATTTTAACATATTCTAT
CTTTAAAAATTGCTCATAACCttttctagttctagttctattaaTTAATC
ACATAATACGCTACATTAAATTATCTggtacattatcatgatattgaaaa
taaaagtaatatgaaaatacctgataaaatgaaaacaactaaAGCTAAAA
GGGGTTGCAATAAGAAGTAGTTAATTACAGAGCTAAAAGTAGCAAGATAT
GACTGGAGCTGAAAAGCCACCACAAGGATATAGTAATAGTGTAAAGTAAA
GTGAGAGGCTGTGATAATGTATGTAGACCTGAAAGACTTGTGATTTGATA
AAACATTGAGAACTGCATAAAGATTTTTAGATAATAAATGTGAttactta
aaataaaatattaacatTCAGCATCTTCAATAtaagctaaaaagaaaata
gtgAATAAATAGATTTGCCTTGATTGCACGACCAGAGTtgattagaaaat
aaaatttgagaatttgTGAGATTAGAGGATGATGAGTTGATGAGATTAGA
GACTAAGGAGGCACAGCAGGAATAGAGCTAATAAAAGCTAGAAATCAGGA
GTTACGAACAGGTGAAGGCAAAATGTAAGCAATTAAAATGATATATACAA
ATTAAGGGTAGTGCTCATTAACACCTTTTAACACCATTTCCTGGCAAAGT
TTTCGCAATACAGATATTGTAAGTTGgcctaatgtcgacatccctcatct
aatccAAACACCCTTCTGATAGATAGGATTGAATTAAGGTAGGTCTGAGA
AACTGATGGAAAAAGGATTTTTTCCACTCTAACGGTTATTTAGCGACCGT
CAATTCCAACCTCACTATTATTCCTAgctttaaagaagggtgtcagaatt
agatgagggatgttgaCGTTCGACCAATTTACATTATTTTGTTTAACTcc
gttaactgttcttatcctCATGCCAAAAGATCTGGCTCTGACTTTTTTCT
GTTATTATACTGTTGACCAGAGAGCCAGAAAACAATTATGATTTTGATCT
CTGATACATCTTTTGTCGATAAAGATTTCAATTAAATGTTCATTACGATG
GAGCAGTTTTCTCCATCAACATTGACACCCCTCTTCTAATCCTGACACCC
TTCTCCTTGCTTATAAAGTAAAGAAATCTTATTAGTGATTCTGGCATTCC
TATCGCTTAAGAAGGGCGAGGAAGAAGGTTTTTTAACCACAATGGAGCTT
CATGTTTTATACATCTTCCCCAAAAGATAACCTATGCATTCCTTACTATC
cctctatttctttttttggtCCTTCTGAGGGTGTCATTGGTATATAATAC
TTTGACATTTTCAGTGTTGTGGCGTTTCGAAACATCTTTGGTTGTTGCGA
TTGTTATTTGCTTTGTATGCACTGGCTATACTCATCCATTCAGCTGTTGC
ATTCCATACTCAATACTGGGCAATATTTCTAACCCAATGGGGACATGTTG
TTTCTACTATTTACCTCTGTACCGGCTCTGTGTTATCCATTTATTATACA
TTCCAAAAGTCAAATATTATTGTCAGCAACAAAGCTGATTTTGAACTCTC
CTCCCCTGTGACGGACATGCACGATAAAGTTGTCTTCAGAGAGATATCAG
TCTCTAACATGGTACCCAAAAAGGTGCGTTTCTTTTGGCTTGTAGCCAAT
ATGTCATATGTTATTGGTGGACTTATCATCATCCTGTACTGGGGATTCGT
ACACCAAGATCACTTCTTGGATGGTGCAGATGCCGAGTTTGCAAACATCA
ACTTGCATGGAGTTGTATATGGTCTGGTTGTCATCGATTTCCTTCTGAGT
GGAATACCTATCCGCATCTTACATGGAGTGTATCCCATTCTATTTGGTCT
CACCTATGGTGTATTCTCTGCAATCTTTACCTTATCAACCAAACGTGCTG
TCTACCCTGTCTTGAAGTGGCATACACATGCTGTTCAAgctttgattttt
agtttgatgGCTCTGGGTGTTGTGATAGtcgttcaaatatttttctatgg
aGTTCACAGATTGAAGAGGAGAGTGCGATCGAGAACGATGACCATGCCTT
AGGTTTCTCTAAATTCTATTAATTGAGAGCCATGGTATTGTCTTTCTCTA
ATACAGTAGATAACATGAACGAACTGCTTTATTTAACACCATTGAGATCA
AGGTGGGAAAATGTATTTAAAGATGATTTTTATTTAGTTTCAcaagcttt
ttatttttttgcacaataatATGATATTTTATTATCAGTTAGTCATGTTG
TtaatatatttcattttatcTTGATATACACCATTCATTTTTATTGTAAG
TGACAATATATTTCATTGTTGTGTGTAGCCTTGTAGATAATTCTTTCATT
CGTCATTTTAGacattcttttcaaatttaaatagTGTCTAATACCCGGGG
GGTAGTAGGTTTGcaagatgacgggtatgtccgag Coding sequence (CDS) from alignment at sc0000300:56592..60126+ >TCONS_00018414 ID=TCONS_00018414|Name=TCONS_00018414|organism=Clytia hemisphaerica|type=CDS|length=1632bp|location=Sequence derived from alignment at sc0000300:56592..60126+ (Clytia hemisphaerica)
ATGAGTTTCAAAGCAGAATTTAAGCTTGAAAAGCTCAAATTTAAACATGA
CTCCATTGAAGACTTTTATACCCTGAGGTGTTGTGGCGTTTCGAAACATC
TTTGGTTGTTGCGATTGTTATTTGCTTTGTATGCACTGGCTATACTCATC
CATTCAGCTGTTGCATTCCATACTCAATACTGGGCAATATTTCTAACCCA
ATGGGGACATGTTGTTTCTACTATTTACCTCTGTACCGGCTCTGTGTTAT
CCATTTATTATACATTCCAAAAGTCAAATATTATTGTCAGCAACAAAGCT
GATTTTGAACTCTCCTCCCCTGTGACGGACATGCACGATAAAGTTGTCTT
CAGAGAGATATCAGTCTCTAACATGGTACCCAAAAAGGTGCGTTTCTTTT
GGCTTGTAGCCAATATGTCATATGTTATTGGTGGACTTATCATCATCCTG
TACTGGGGATTCGTACACCAAGATCACTTCTTGGATGGTGCAGATGCCGA
GTTTGCAAACATCAACTTGCATGGAGTTGTATATGGTCTGGTTGTCATCG
ATTTCCTTCTGAGTGGAATACCTATCCGCATCTTACATGGAGTGTATCCC
ATTCTATTTGGTCTCACCTATGGTGTATTCTCTGCAATCTTTACCTTATC
AACCAAACGTGCTGTCTACCCTGTCTTGAAGTGGCATACACATGCTGTTC
AAgctttgatttttagtttgatgGCTCTGGGTGTTGTGATAGtcgttcaa
atatttttctatggaGTTCACAGATTGAAGAGGAGAGTGCGATCGAGAAC
GATGACCATGCCTTAGATGAGTTTCAAAGCAGAATTTAAGCTTGAAAAGC
TCAAATTTAAACATGACTCCATTGAAGACTTTTATACCCTGAGGTGTTGT
GGCGTTTCGAAACATCTTTGGTTGTTGCGATTGTTATTTGCTTTGTATGC
ACTGGCTATACTCATCCATTCAGCTGTTGCATTCCATACTCAATACTGGG
CAATATTTCTAACCCAATGGGGACATGTTGTTTCTACTATTTACCTCTGT
ACCGGCTCTGTGTTATCCATTTATTATACATTCCAAAAGTCAAATATTAT
TGTCAGCAACAAAGCTGATTTTGAACTCTCCTCCCCTGTGACGGACATGC
ACGATAAAGTTGTCTTCAGAGAGATATCAGTCTCTAACATGGTACCCAAA
AAGGTGCGTTTCTTTTGGCTTGTAGCCAATATGTCATATGTTATTGGTGG
ACTTATCATCATCCTGTACTGGGGATTCGTACACCAAGATCACTTCTTGG
ATGGTGCAGATGCCGAGTTTGCAAACATCAACTTGCATGGAGTTGTATAT
GGTCTGGTTGTCATCGATTTCCTTCTGAGTGGAATACCTATCCGCATCTT
ACATGGAGTGTATCCCATTCTATTTGGTCTCACCTATGGTGTATTCTCTG
CAATCTTTACCTTATCAACCAAACGTGCTGTCTACCCTGTCTTGAAGTGG
CATACACATGCTGTTCAAgctttgatttttagtttgatgGCTCTGGGTGT
TGTGATAGtcgttcaaatatttttctatggaGTTCACAGATTGAAGAGGA
GAGTGCGATCGAGAACGATGACCATGCCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018414-exon-sc0000300-1491911889:56592..56975 | TCONS_00018414-exon-sc0000300-1491911889:56592..56975 | Clytia hemisphaerica | exon |
| TCONS_00018414-exon-sc0000300-1510915933:56592..56975 | TCONS_00018414-exon-sc0000300-1510915933:56592..56975 | Clytia hemisphaerica | exon |
| TCONS_00018414-exon-sc0000300-1575043694:56592..56975 | TCONS_00018414-exon-sc0000300-1575043694:56592..56975 | Clytia hemisphaerica | exon |
| TCONS_00018414-exon-sc0000300-1491911889:59006..60126 | TCONS_00018414-exon-sc0000300-1491911889:59006..60126 | Clytia hemisphaerica | exon |
| TCONS_00018414-exon-sc0000300-1510915933:59006..60126 | TCONS_00018414-exon-sc0000300-1510915933:59006..60126 | Clytia hemisphaerica | exon |
| TCONS_00018414-exon-sc0000300-1575043694:59006..60126 | TCONS_00018414-exon-sc0000300-1575043694:59006..60126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000300 | supercontig | sc0000300:56592..60126 + |
Blast
The following BLAST results are available for this feature:
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