TCONS_00018429 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018429
Unique Name	TCONS_00018429
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	667

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000300:281405..284037+

transcript sequence

>TCONS_00018429 ID=TCONS_00018429|Name=TCONS_00018429|organism=Clytia hemisphaerica|type=transcript|length=667bp
ATGTTGATAAAATGGCTGCAAGTCCAGAACGTTCTAATCAACATTACAAG
AAATTATATGAAGATCAAGGTCGTGAGATTCTTGTGAAGACCAAACAACT
GAACGACATTACTAAagatttcgaaaagaaaactaaTTTGGTTGAGggTT
TGAAAGATCATATAAATGGAATGGAAAAGTCAATGAAGGTCATGCGTTCA
AACCTTCATGAAAAAGAAATGGATAAACAAAGAGTCGTCAGTCAACTTCA
AGAAAAACTAAAGAACTATCAAAGCTTGCTGAATCAAAAAGATGAGGAGa
aTTCAGAAAAGTCAGAGTCGTTGGAATCCATGAAAGAAACTATagcaaaa
tcaaatcaagagCGCCTCCAATTTCAACTCCAATCCTCTCAAGAAAAAGA
TTCGCAAATGATTGAGTTGAATGTAAAAGTGAAGCAACAGCAGTTCGAAA
TCGAgaaattgaaatatttattggaagaaaaagacaaagaagTGCTCTAT
TTTGGGAATAAGAATCTCCAATTAGAAGAGGAATCGACAAGGGAACGTAA
TGAGCAACTCCAATCTCTCGAACTTTTGAAGCAAGATGTCAAAGAGAAAG
TCGCCCGTCTTCAAGCTGCATTGGATGGGTCACAGAAAAGCTATCAGGCA
GATTCAATCAGATGATG

Run BLAST on NCBI

transcript from alignment at sc0000300:281405..284037+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018429 ID=TCONS_00018429|Name=TCONS_00018429|organism=Clytia hemisphaerica|type=transcript|length=2633bp|location=Sequence derived from alignment at sc0000300:281405..284037+ (Clytia hemisphaerica)
ATGTTGATAAAATGGCTGCAAGTCCAGAACGTTCTAATCAACATTACAAG
GTAGACTATGTACCGTATTATATTTTCACATTTTCTACACGTTCATCTCT
CACTTTATCTTATTTTTGGTTGTGTGGCAAAATTTTGATGGAAGTTCATT
TTGTAGCATATTTCAGTTTACTAATCTTTTGTTTTACTAGAAATTATATG
AAGATCAAGGTCGTGAGATTCTTGTGAAGACCAAACAACTGAACGACATT
ACTAAagatttcgaaaagaaaactaaTTTGGTTGAGGTACCTATCCATGT
TTTCAAAGCAGGTGGATTTTCGTCTCATCCATCCAGTTTAgcaaaattta
atgaatttgGTTGAATCGTTTGTTATAAAACTAACTGTTGAAACAATGTA
GTATTCTATATGCTCTGATTCTGGTTTGCAATATGCTGTTTGGGTCACTC
CATTGTATGATGTAACAGAATATTAAATTGCACACTTGTAtcaatcaaaa
attgaattgcATCTGACTTTGTTACATGTTGCTATGAAttgttttgatat
ttgataACGTGAGATGGGCTTCCCAAAGTTTCTGATGAGGtcttaaaact
ttattttttcagggTTTGAAAGATCATATAAATGGAATGGAAAAGTCAAT
GAAGGTAGGTTTTTTAAAAAGGGTTTTGTCTTAAATCAATTTGTTGCAAA
TATTTTGGTTTGCGAAATGCGTTTTCAAAAATACAGGGTGATTAAAAAAA
CCGCACCCCTTTGACTTTTTTAacgtaatttttttctgttAGTTGTATAG
CCACACAATATTTGACACTCTTTCTCTTGCAAAGTTGGAGTCAAAGATTG
AACTTGTTTACTGCTTTTGCAGGTCATGCGTTCAAACCTTCATGAAAAAG
AAATGGATAAACAAAGAGTCGTCAGTCAACTTCAAGAAAAACTAAAGGTT
AATGAGAATAcccaaattataaatttttttctgtaaatccAGATAATACA
ATACCACCATAATAGAAAAAACGGTTAATACCCAAAGTTCATATCTATTT
CTGTAAATATGTGTCATATAATACAATGCTTCATAGTTCGAACATATTTC
TGGATTCTTCTTTCAGAACTATCAAAGCTTGCTGAATCAAAAAGATGAGG
AGGTTAGTCTGCATGGAACTTAGTATACTTGGTCCATGATACTTttagtt
tttgaaaactttttttgactCCAATTATTCTTTGAAAGCCTATACCTATC
TGGATGTTGATATTTTACTTGTTGGTATTTTCGGCTATGTTTAATCTCAA
AGCTTAATGAGAAGAGTGGGATTTTGATAATGTCACgagtgaagaaattt
taaaagaatacaGAAGAATGAATGAGGGCAAAAAAAGGAACTTTGAACAA
AATCAATTAGCttagaaaatttctaaaatttttaacgAGTGAGGTATACT
TTTTGGGTACCCGATAGAGGCATACAAGAATTTTAGATCTCTCTCTAGAA
TAAAGAATTCTTTTCATAAAGCCCTTTTCATTTAtataatttcatatttt
tatttttttaacagaaTTCAGAAAAGTCAGAGTCGTTGGAATCCATGAAA
GAAACTATagcaaaatcaaatcaagaggttttgacttttttcttttgtaa
ttgTGTGGGGCTGGCTTTTATAACGACAATATTTAAAACGCcaataattc
aaaaaacacCCGAACACACTTTTCCTCGTGTATAATTATACCGAAGATCA
TTCAACCTTCTAATTATTTCATAGCGCCTCCAATTTCAACTCCAATCCTC
TCAAGAAAAAGATTCGCAAATGATTGAGTTGAATGTAAAAGTGAAGCAAC
AGCAGTTCGAAATCGAggtaaaaatgaattttaaaataaagataAGATTC
TGTTTGTGATCTGAGCTTATTTTGAGTCATTTTTACTCTAAGGGAattca
tttaatttttcaaaatatctttcttttcagaaattgaaatatttattgga
agaaaaagacaaagaagTGCTCGTAAGCCCCTTATGTAAAATACTTTCGG
TTTTTCTTTGCTCGTTATCTGACCGAAGAAAAAGCGTATCGAGACAATCG
CTTTCTCCTCCTTAAAAGTCTTTTACATTCAAGTTTTTTNAAAGGAAAAG
CGTATCGAGACAATCGCTTTCTCCTCCTCAAAAGTCTTTTACATTCAAGT
TTTTTTCTACTGTAAGGATTCTCAGTAAAGAGTCCCATATAACTCAACAC
TATTTTTTTCCAGTATTTTGGGAATAAGAATCTCCAATTAGAAGAGGAAT
CGACAAGGGAACGTAATGAGCAACTCCAATCTCTCGAACTTTTGAAGCAA
GATGTCAAAGAGAAAGTCGCCCGTCTTCAAGCTGCATTGGATGGGTCACA
GAAAAGCTATCAGGTATTTTCCTATGATCATTTGAAAACAGTAAAGTAGC
TTTAGAAATACGAGCAAAGCCTTTTTCAATCTTATGTTTTCATCGCTCAA
ATTCTTGAGATGCCTTGAGAGAGTTACCAATAACATATGAGGAATCTTAT
TCAGCATTTATTagaaaattgtacaaaaatattttattaacaCTTTTTTT
AAGTCTTTACAAGGCAGATTCAATCAGATGATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010338	XLOC_010338	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000300	supercontig	sc0000300:281405..284037 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.210872	0.305119	5.74279	7.52416	4.10442	3.13232	0.274725	1.42136	2.54573	0.853206	0	0	0.0744605	0	0	0	0	0	0	0	0	0	8.30787	7.14619	0.0308747	0	1.63588	0.525956

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00018429 vs. Swiss-Prot (Human)

BLAST of TCONS_00018429 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00018429 (transcript) - C. hemisphaerica