TCONS_00018430 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018430
Unique NameTCONS_00018430
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length994

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018430 ID=TCONS_00018430|Name=TCONS_00018430|organism=Clytia hemisphaerica|type=transcript|length=994bp
CAAGTCCAGAACGTTCTAATCAACATTACAAGggTTTGAAAGATCATATA
AATGGAATGGAAAAGTCAATGAAGGTCATGCGTTCAAACCTTCATGAAAA
AGAAATGGATAAACAAAGAGTCGTCAGTCAACTTCAAGAAAAACTAAAGA
ACTATCAAAGCTTGCTGAATCAAAAAGATGAGGAGaaTTCAGAAAAGTCA
GAGTCGTTGGAATCCATGAAAGAAACTATagcaaaatcaaatcaagagCG
CCTCCAATTTCAACTCCAATCCTCTCAAGAAAAAGATTCGCAAATGATTG
AGTTGAATGTAAAAGTGAAGCAACAGCAGTTCGAAATCGAgaaattgaaa
tatttattggaagaaaaagacaaagaagTGCTCTATTTTGGGAATAAGAA
TCTCCAATTAGAAGAGGAATCGACAAGGGAACGTAATGAGCAACTCCAAT
CTCTCGAACTTTTGAAGCAAGATGTCAAAGAGAAAGTCGCCCGTCTTCAA
GCTGCATTGGATGGGTCACAGAAAAGCTATCAGGCAGATTCAATCAGATG
ATGGATGAGAAAGATAAAACAATCGAAAGTGTAACTGGTGCTTTAAAATT
TAAAGATGCCCTGATTAAGGAGCTGTTGGCAACACCATCTGGCTTGAATG
AAGATCAAGAAGCTATCACCAAAAAGCTTCAAAGCTCGTTCCAAATGCTT
CAAAAACGATCCGAGGATCAAGAATTGAAGTATTTAGATCAAATGCAAAA
CAAAGATAATGACATTCTGGATTTGACCAATCAAATACAACAAGCAACTC
TTACCACCCAAAAATCACAAGCTTTCGTTTATAATCTGCAATCTAAAATC
AAGGGCTTGAACGCAAACGCTGACgaagataatgaaattttagACAAATT
GAGGAACTCGTTGAAGAATGCAATCGATAAAGAGCGAGCTTCAAGACAAG
ATTTGGTTGAAATGCTGAATGAAAAGGAggaagaaatatcaaaa
Run BLAST on NCBI

transcript from alignment at sc0000300:281423..285469+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018430 ID=TCONS_00018430|Name=TCONS_00018430|organism=Clytia hemisphaerica|type=transcript|length=4047bp|location=Sequence derived from alignment at sc0000300:281423..285469+ (Clytia hemisphaerica)
CAAGTCCAGAACGTTCTAATCAACATTACAAGGTAGACTATGTACCGTAT
TATATTTTCACATTTTCTACACGTTCATCTCTCACTTTATCTTATTTTTG
GTTGTGTGGCAAAATTTTGATGGAAGTTCATTTTGTAGCATATTTCAGTT
TACTAATCTTTTGTTTTACTAGAAATTATATGAAGATCAAGGTCGTGAGA
TTCTTGTGAAGACCAAACAACTGAACGACATTACTAAagatttcgaaaag
aaaactaaTTTGGTTGAGGTACCTATCCATGTTTTCAAAGCAGGTGGATT
TTCGTCTCATCCATCCAGTTTAgcaaaatttaatgaatttgGTTGAATCG
TTTGTTATAAAACTAACTGTTGAAACAATGTAGTATTCTATATGCTCTGA
TTCTGGTTTGCAATATGCTGTTTGGGTCACTCCATTGTATGATGTAACAG
AATATTAAATTGCACACTTGTAtcaatcaaaaattgaattgcATCTGACT
TTGTTACATGTTGCTATGAAttgttttgatatttgataACGTGAGATGGG
CTTCCCAAAGTTTCTGATGAGGtcttaaaactttattttttcagggTTTG
AAAGATCATATAAATGGAATGGAAAAGTCAATGAAGGTAGGTTTTTTAAA
AAGGGTTTTGTCTTAAATCAATTTGTTGCAAATATTTTGGTTTGCGAAAT
GCGTTTTCAAAAATACAGGGTGATTAAAAAAACCGCACCCCTTTGACTTT
TTTAacgtaatttttttctgttAGTTGTATAGCCACACAATATTTGACAC
TCTTTCTCTTGCAAAGTTGGAGTCAAAGATTGAACTTGTTTACTGCTTTT
GCAGGTCATGCGTTCAAACCTTCATGAAAAAGAAATGGATAAACAAAGAG
TCGTCAGTCAACTTCAAGAAAAACTAAAGGTTAATGAGAATAcccaaatt
ataaatttttttctgtaaatccAGATAATACAATACCACCATAATAGAAA
AAACGGTTAATACCCAAAGTTCATATCTATTTCTGTAAATATGTGTCATA
TAATACAATGCTTCATAGTTCGAACATATTTCTGGATTCTTCTTTCAGAA
CTATCAAAGCTTGCTGAATCAAAAAGATGAGGAGGTTAGTCTGCATGGAA
CTTAGTATACTTGGTCCATGATACTTttagtttttgaaaactttttttga
ctCCAATTATTCTTTGAAAGCCTATACCTATCTGGATGTTGATATTTTAC
TTGTTGGTATTTTCGGCTATGTTTAATCTCAAAGCTTAATGAGAAGAGTG
GGATTTTGATAATGTCACgagtgaagaaattttaaaagaatacaGAAGAA
TGAATGAGGGCAAAAAAAGGAACTTTGAACAAAATCAATTAGCttagaaa
atttctaaaatttttaacgAGTGAGGTATACTTTTTGGGTACCCGATAGA
GGCATACAAGAATTTTAGATCTCTCTCTAGAATAAAGAATTCTTTTCATA
AAGCCCTTTTCATTTAtataatttcatatttttatttttttaacagaaTT
CAGAAAAGTCAGAGTCGTTGGAATCCATGAAAGAAACTATagcaaaatca
aatcaagaggttttgacttttttcttttgtaattgTGTGGGGCTGGCTTT
TATAACGACAATATTTAAAACGCcaataattcaaaaaacacCCGAACACA
CTTTTCCTCGTGTATAATTATACCGAAGATCATTCAACCTTCTAATTATT
TCATAGCGCCTCCAATTTCAACTCCAATCCTCTCAAGAAAAAGATTCGCA
AATGATTGAGTTGAATGTAAAAGTGAAGCAACAGCAGTTCGAAATCGAgg
taaaaatgaattttaaaataaagataAGATTCTGTTTGTGATCTGAGCTT
ATTTTGAGTCATTTTTACTCTAAGGGAattcatttaatttttcaaaatat
ctttcttttcagaaattgaaatatttattggaagaaaaagacaaagaagT
GCTCGTAAGCCCCTTATGTAAAATACTTTCGGTTTTTCTTTGCTCGTTAT
CTGACCGAAGAAAAAGCGTATCGAGACAATCGCTTTCTCCTCCTTAAAAG
TCTTTTACATTCAAGTTTTTTNAAAGGAAAAGCGTATCGAGACAATCGCT
TTCTCCTCCTCAAAAGTCTTTTACATTCAAGTTTTTTTCTACTGTAAGGA
TTCTCAGTAAAGAGTCCCATATAACTCAACACTATTTTTTTCCAGTATTT
TGGGAATAAGAATCTCCAATTAGAAGAGGAATCGACAAGGGAACGTAATG
AGCAACTCCAATCTCTCGAACTTTTGAAGCAAGATGTCAAAGAGAAAGTC
GCCCGTCTTCAAGCTGCATTGGATGGGTCACAGAAAAGCTATCAGGTATT
TTCCTATGATCATTTGAAAACAGTAAAGTAGCTTTAGAAATACGAGCAAA
GCCTTTTTCAATCTTATGTTTTCATCGCTCAAATTCTTGAGATGCCTTGA
GAGAGTTACCAATAACATATGAGGAATCTTATTCAGCATTTATTagaaaa
ttgtacaaaaatattttattaacaCTTTTTTTAAGTCTTTACAAGGCAGA
TTCAATCAGATGATGGATGAGAAAGATAAAACAATCGAAAGTGTAACTGG
TGCTTTAAAATTTAAAGATGCCCTGATTAAGGTAAATAACTGTATGGTCT
TTTCACGTGCACCTAGGTCGCGATGCTACCACAGATACACAAAACATAAA
CGCCGTAAAACGCACTAGTGACTTTTGCTTGCGCGATGGCGTAAGTTAAA
TTGCAACCTTAGTCGAAGGTAGCTGCCTACTCGTTGACGTTTCACGCGAT
GACCTCACTTTGTGTCAATTTTCACCACTTCATATGTGTAAATAGTGTGC
AATATTTTCCGAGGCTTTAGAAGTGTAAATTATACAAAAAACTCGTTTTC
TATTCCACTTCAAGGAGCTGTTGGCAACACCATCTGGCTTGAATGAAGAT
CAAGAAGCTATCACCAAAAAGCTTCAAAGCTCGTTCCAAATGCTTCAAAA
ACGATCCGAGGTAAGAAATCTTTTAGAACTTCTAATACCCTCAAACCCGA
TCTcctgtttttttcaaaaatccctGCTTTTCCCTCCCAGCCTCCCGTTT
GGATAGTTTGATAAAGCCAATTGTTTCTCCTTCATAGGATCAAGAATTGA
AGTATTTAGATCAAATGCAAAACAAAGATAATGACATTCTGGATTTGACC
AATCAAATACAACAAGCAACTCTTACCACCCAAAAATCACAAGCTTTCGT
TTATAATCTGCAATCTAAAATCAAGGTAAGTTTTTCCTTTCATCATTGNT
CTCTTACCAACCAAAAATCACAAGCTTTCGTTAATAATCTGCAATCTAAA
ATCAAGGTAAGTTTTTCCTTTCATCGTTGATTTCTATATTGAAAGCTTTC
CACCAGCGATATTTAGTACACGAGCTAGGCTGCTAAAATCCTCTAGTATG
CTTTGTTATCAGAAAACGCTCAGATAAACACGCTACACGCCGTCTGAACC
TGTATCAAACCGATACACGCAGTCTAGTCATCAGCTCAATGTGCTCATTG
AATCTTTTCGGAATCGGTTTTGTACTTGTGCGATTCTGTATGCAATTTTG
TATTCTGACTGCTTTTGAATTGGTAAGTCATACATCAGATCCTCCTTCCA
TGTTATACTTTACATATTTTTTCTATAGGGCTTGAACGCAAACGCTGACg
aagataatgaaattttagACAAATTGAGGAACTCGTTGAAGAATGCAATC
GATAAAGAGCGAGTAAGTTTATGAGCATTTTGTGgtcattctttttcatt
ttaattctCTTGTGTTTAATTGTAGAGTTCTACTTCTTTTCACGAATAAA
GTTAGTAAGCattcgttaattttttcagCAAGATTGGAGAGACTTAAGAG
ACTGCTTTGATCTTTGATCTTTAATTTATTTCTCTCACAGGCTTCAAGAC
AAGATTTGGTTGAAATGCTGAATGAAAAGGAggaagaaatatcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010338XLOC_010338Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018430-exon-sc0000300-1491911889:281423..281454TCONS_00018430-exon-sc0000300-1491911889:281423..281454Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1510915933:281423..281454TCONS_00018430-exon-sc0000300-1510915933:281423..281454Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1575043694:281423..281454TCONS_00018430-exon-sc0000300-1575043694:281423..281454Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1491911889:282017..282058TCONS_00018430-exon-sc0000300-1491911889:282017..282058Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1510915933:282017..282058TCONS_00018430-exon-sc0000300-1510915933:282017..282058Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1575043694:282017..282058TCONS_00018430-exon-sc0000300-1575043694:282017..282058Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1491911889:282277..282351TCONS_00018430-exon-sc0000300-1491911889:282277..282351Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1510915933:282277..282351TCONS_00018430-exon-sc0000300-1510915933:282277..282351Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1575043694:282277..282351TCONS_00018430-exon-sc0000300-1575043694:282277..282351Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1491911889:282521..282556TCONS_00018430-exon-sc0000300-1491911889:282521..282556Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1510915933:282521..282556TCONS_00018430-exon-sc0000300-1510915933:282521..282556Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1575043694:282521..282556TCONS_00018430-exon-sc0000300-1575043694:282521..282556Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1491911889:282969..283031TCONS_00018430-exon-sc0000300-1491911889:282969..283031Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1510915933:282969..283031TCONS_00018430-exon-sc0000300-1510915933:282969..283031Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1575043694:282969..283031TCONS_00018430-exon-sc0000300-1575043694:282969..283031Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1491911889:283179..283271TCONS_00018430-exon-sc0000300-1491911889:283179..283271Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1510915933:283179..283271TCONS_00018430-exon-sc0000300-1510915933:283179..283271Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1575043694:283179..283271TCONS_00018430-exon-sc0000300-1575043694:283179..283271Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1491911889:283385..283426TCONS_00018430-exon-sc0000300-1491911889:283385..283426Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1510915933:283385..283426TCONS_00018430-exon-sc0000300-1510915933:283385..283426Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1575043694:283385..283426TCONS_00018430-exon-sc0000300-1575043694:283385..283426Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1491911889:283668..283817TCONS_00018430-exon-sc0000300-1491911889:283668..283817Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1510915933:283668..283817TCONS_00018430-exon-sc0000300-1510915933:283668..283817Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1575043694:283668..283817TCONS_00018430-exon-sc0000300-1575043694:283668..283817Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1491911889:284018..284103TCONS_00018430-exon-sc0000300-1491911889:284018..284103Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1510915933:284018..284103TCONS_00018430-exon-sc0000300-1510915933:284018..284103Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1575043694:284018..284103TCONS_00018430-exon-sc0000300-1575043694:284018..284103Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1491911889:284387..284482TCONS_00018430-exon-sc0000300-1491911889:284387..284482Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1510915933:284387..284482TCONS_00018430-exon-sc0000300-1510915933:284387..284482Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1575043694:284387..284482TCONS_00018430-exon-sc0000300-1575043694:284387..284482Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1491911889:284610..284747TCONS_00018430-exon-sc0000300-1491911889:284610..284747Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1510915933:284610..284747TCONS_00018430-exon-sc0000300-1510915933:284610..284747Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1575043694:284610..284747TCONS_00018430-exon-sc0000300-1575043694:284610..284747Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1491911889:285151..285234TCONS_00018430-exon-sc0000300-1491911889:285151..285234Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1510915933:285151..285234TCONS_00018430-exon-sc0000300-1510915933:285151..285234Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1575043694:285151..285234TCONS_00018430-exon-sc0000300-1575043694:285151..285234Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1491911889:285413..285469TCONS_00018430-exon-sc0000300-1491911889:285413..285469Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1510915933:285413..285469TCONS_00018430-exon-sc0000300-1510915933:285413..285469Clytia hemisphaericaexon
TCONS_00018430-exon-sc0000300-1575043694:285413..285469TCONS_00018430-exon-sc0000300-1575043694:285413..285469Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:281423..285469 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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