TCONS_00018442 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018442
Unique Name	TCONS_00018442
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2064

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000300:35860..41392-

transcript sequence

>TCONS_00018442 ID=TCONS_00018442|Name=TCONS_00018442|organism=Clytia hemisphaerica|type=transcript|length=2064bp
aaaaaaataacaaaaaaatctttgCATGTTGCAGATGGTTAAGCTGAAGT
ATCAAAAGAAATGCTCAAACTCTTCAGAAGGCGAAAGGGCATCACATCTA
GTTCACTGAGAAATTTGTCTGCGACGTCACAATTTTCATCAGCCAATCAG
AACTTCGACAGCAGTCATGATTACGTCATTGTAGGAACCGGCTCAGCTGG
ATGCGTTCTTTCCAATCGTCTAACTGAAGATGGAGAAAACACGGTCCTGG
CTCTTGAAGCTGGCCCTAAAGACCCTTGGTGGCAATGGAAGATTCACATG
CCGGCAGCGATGACGTACAACTTATGCAACGATAACTACAATTGGTATTA
TCACACTGCTCCTCAGAAAGGCTTGAATAATCGAGTGTTGTATTGGCCAC
GTGGTCGTGTATGGGGCGGCTCGTCGGGCCTCAACGCCATGGTGTACGTT
CGCGGGCACGCCCATGATTATGATCGATGGCAGTCGGAAGGAGCGGAAGG
GTGGTCTTATGCTGATTGTCTCCCTTATTTCAGAAAATCGCAGACACATC
AAGAAGGAGGAGACGACTACCGTGGTGGTGAGGGTCCCCTTCACGTGTCA
CGTGGTACAATGAGCAACCCTCTTCACCAGGCCTTTTTGGAAGCAGGTCA
ACAAGCTGGATATCAATATGTCGATGATCTGAACGGCTTCCAACAAGAAG
GTGTTGGGCCGTTCGATCGAACTATCCACAACGGAAAACGTTGGAGTGCT
TCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGAAGAACCTTACCGCTCA
AGACCGCGCGATGACATTGAAAGTCATTTTCGAAGGTGACAAAGCAGTGG
GTGTGGAATACATgcacaaaaataaaatcaaacgcgcaaaagcaaataaa
gaagtcatccTATCAGGTGGCTCGATCAACACACCACAGTTGTTGATGTT
GTCGGGTGTGGGCGACGAGAATGAGTTGAAAGAGCATGGAATCCCCCTCG
TCCATCATCTGCCAGGCGTTGGGAAGAATCTCCAAGACCATCTTGAAGTC
TACGTCCAACAGAGATGCACGCAACCAGTGACATTATACAAGCAGACACG
TTTATGGTACATGCCGTTCATTGGTTCACAATGGTTCATGACGCGCACAG
GTGATTGCGCTACCAACAGTTTGGAGACAGGTGGTTTCATCCGAAGTAGA
GAAGGTGTACCTCACCCTGACATCCAAATCCACTTTCTACCGTTCGCCGT
CAAAGATCACGGCCGTGTTTTCCCAGATGGTCATGCTTATCAGTTCCATT
CAGGTACGATGCGAGAGACGAGCGTTGGAACATTGAAATTGAAATCGAGT
GACCCACGTGATCATCCAATTCTCGACCCAAACTACCTGGACACCCCTGA
TGACATTGTAGACCTGAGGAACGCTGTCAAATTATCACGTGAAATCATGT
CTCAAAAAGCTTTCGATCCTTTCCGTGGCGATGAAATGTTACCAGGGTCT
CATGTTCAATCAGACGAAGAAATTGATGCTTTCATTCGCGAACATGGAGA
TTCTGCATATCATCCTTCATGCACTTGCAAAATGGGAGCCTCTGATGACC
CCTTGGCTGTCACTGATTCCCAGACTCGTGTGCACGGCCTTCAAAACCTA
CGGATCGTTGACGCATCTATCATGCCATCCGTTGTCAGTGGCAACTTAAA
CGGCCCTGTCATCATGATGGCGGAAAAAGCTGCGGATATCATCCGTGGTC
GTGATCCGCTTCCCAAATCAACAGCACCCGTCTACGAAACTCCTGCTACT
GGCCAACGATAATGTGATAGGTTTCCTGCAAAAGATTTAGTATCTCCTTC
GTAGCATGTGTGCAAGGAGCACTATCTTTCCAAAGATGGATACAACATTA
AGAATTTAGACGGTcatctttttagttttttttttaaatttaaattaaat
gaatttttttaagattaaatTTTAATATATTAAATTGTTAATATTAAAAT
AATAATGGAGATTTTTAATTGATTACAATGAAAGAAAGAGAAagtatatt
tttacaaaaaaatg

Run BLAST on NCBI

transcript from alignment at sc0000300:35860..41392-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018442 ID=TCONS_00018442|Name=TCONS_00018442|organism=Clytia hemisphaerica|type=transcript|length=5533bp|location=Sequence derived from alignment at sc0000300:35860..41392- (Clytia hemisphaerica)
AAAAAAATAACAAAAAAATCTTTGCATGTTGCAGATGGTTAAGCTGAAGT
ATCAAAAGAAATGCTCAAACTCTTCAGAAGGCGAAAGGGCATCACATCTC
GTTCACTGAGAAATTGTGAGTCGAATTTGTGCACATCTAGTTCACTGAGA
AATTGTGAGTCGAATTTGTGAAATCTCTGAACATTTCATCATATATGATT
TCATCCAGCGCAGATGGTTGGTTTCTTGAAATTTCGAAATGGAGAATTAT
TTCCAGCCAGAACTTTCAATGTATGTTATATTTATATAATCCGAGAGTTG
ATCCCTTTTCTTTTATGATTTCTAACATGTTATTAAAATGTTTTCAGTGT
CTGCGACGTCACAATTTTCATCAGCCAATCAGAACTTCGACAGCAGTCAT
GATTACGTCATTGTAGGAACCGGCTCAGCTGGATGCGTTCTTTCCAATCG
TCTAACTGAAGATGGAGAAAACACGGTCCTGGCTCTTGAAGCTGGCCCTA
AAGACCCTTGGTGGCAATGGAAGATTCACATGCCGGCAGCGATGACGTAC
AACTTATGCAACGATAACTACAATTGGTATTATCACACTGCTCCTCAGAA
AGGCTTGAATAATCGGTGAGCATAACCTCGTTTGTTTGGATTTGTCTCTG
GAAATTAGCGAACTAGGTTTGTACTACCCATTGGTTCCCATCACACTTTT
ATTGTAGGTATACAGTGAACTCTCTCTCTCTCTCTCTTATTCGAAGTTCT
ATTATTCGAATCTTTCTGTAATACGAACTAAAATACTGGTCCCCTTAGCT
GAAAAGTCATATAAAATATTATCATAATAATATTGTAATTCGNAAAATAC
TGGTCCCCTTAGCTGAAAAGTCATATAAAATATTATTATAATAATATTGT
AATTCGAATCTTTCTGATAAAGTTTTCCTTTCATGATTATTTTCAAATCG
TTTAGAGTGTTGTATTGGCCACGTGGTCGTGTATGGGGCGGCTCGTCGGG
CCTCAACGCCATGGTGTACGTTCGCGGGCACGCCCATGATTATGATCGAT
GGCAGTCGGAAGGAGCGGAAGGGTGGTCTTATGCTGATTGTCTCCCTTAT
TTCAGAAAATCGCAGACACATCAAGAAGGTGAGCATCTTGCAGCAAGAAT
GAGATAGGAGCTAAATACTAATAAGGATTACAGGGTAACTGGAGGGTTCT
TTTTTCTTTTCACTTGGTTTTCGAAACCGGGTGTGAAATCTTTTGGTACA
CAATATTGACTAAGAAAACGCAAAAGATGCTCTTGAAAACTTTGTAAAAG
TATCCTCTTTGATCCTTTTACAGGAGGAGACGACTACCGTGGTGGTGAGG
GTCCCCTTCACGTGTCACGTGGTACAATGAGCAACCCTCTTCACCAGGCC
TTTTTGGAAGCAGGTCAACAAGCTGGATATCAATATGTCGATGATCTGAA
CGGCTTCCAACAAGAAGGTATCCTTTTCAAATATTCACTTAAGTACTAAA
CCCATTTTACTTGACCGATTGTGAATCGTATTTTATTTCTCACCACTTCA
GATTTCTGTAAAACTTGCACTTTTTGTGGTGTTTTTGCGAATTAAAATAT
CGACATATTCCCAGCATTTTTTGCATCTATGATACTACCATTGCAAAACT
AGATGTCTATCAATACCCATTCCAGATAAAATTGCTCTTATTGCTTCTGG
TTTGAACCTAAAGATTTTGTTTAGCTTAAAAATCATTATTTTCATTTCTC
AGGTGTTGGGCCGTTCGATCGAACTATCCACAACGGAAAACGTTGGAGTG
CTTCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGAAGAACCTTACCGCT
CAAGACCGCGCGATGACATTGAAAGTCATTTTCGAAGGTGACAAAGCAGT
GGGTGTGGAATACATGCACAAAAATAAAATCAAACGCGCAAAAGCAAATA
AAGAAGTCATCCTATCAGGTACGTATCTCCTTCATTATGAAATTCCACTT
CTAAACTAATTCTTTTCAAATGTTTCAAATGTTGTTGCTTTTAATAATGG
TCCAAGCCTCTACTTTACAGACAGCGGTTCGATTCAGTGGATTAGTACAT
CAACCAAATATTCAGTGGTCAACTCGACCGCCATATTTAACATTTTTTTG
AATTTCATCTCACAGGTGGCTCGATCAACACACCACAGTTGTTGATGTTG
TCGGGTGTGGGCGACGAGAANTATCCTCTTTAATCCTTTTATAGGAGGAG
ACGACTACCGTGGTGGTGAGGGTCCCCTTCACGTGTCACGTGGTACAATG
AGCAACCCTCTTCACCAGGCCTTTTTGAAAGCAGGTCAACAAGCTGGATA
TCAATATGTCGATGATCTGAACGGCTTCCAACAAGAAGGTATCCTTTTCA
AATATCCATTTTACTTGACCGATTGTGAATCGTATTTTATTTCTCACCAC
TTCAGATTTCTGTAAAACTTGCACTTTTTGTGATGTTTTTGCGAATTAAA
ACATCAACATATTCCCAGCATTTTTTGCGTTATACATCTATGATACAACC
ATTGCAAAACTAGATGCCAATCCATACCCATTCCAGATAAAAATCAGTGG
CCCTTATTGCTTTTGGTTTGAACCTAAAGATTTTCTTTAGCGACAACCAT
TATTTCTCAGGTGTTGGGCCGTTCGATCGAACTATCCACAACGGAAAACG
TTGGAGTGCTTCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGAAGAACC
TTACCGCTCAAGACCGCGCGATGACATTGAAAGTCATTTTCGAAGGTGAC
AAAGCAGTGGGTGTGGAATACATGCACAAAAATAAAATCAAACGCGCAAA
AGCAAATAAAGAAGTCATCCTATCAGGTACGTATCTCCTTCATTATGAAA
TTCCACTTCTAAACTAATTCTTTTCAAATGTTTCAAATGTTGTTGCTTTT
AATAATGGTCCAAGCCTCTACTTTACAGACAGCAGTTCGATTCAGTGGAT
TAGTACATCAACCAAATATTCAGTGGTCAACTCGACCGCCATATTTAACA
TTTTTTTGAATTTCATCTCACAGGTGGCTCGATCAACACACCACAGTTGT
TGATGTTGTCGGGTGTGGGTGACGAGAATGAGTTGAAAGAGCATGGAATC
CCCCTCGTCCATCATCTGCCAGGCGTTGGGAAGAATCTCCAAGACCATCT
TGAAGTCTACGTCCAGCAGGTAGATAGTTTGTTCTCTCAAGTGTTTTAAT
TCGTGCTATTCAAGATGATAAGGATTTTTATTCATTTNACCGCCATATTT
AACATTTTTTTGAATTTCATCTCACAGGTGGCTCGATCAACACACCACAG
TTGTTGATGTTGTCGGGTGTGGGCGACGAGAATGAGTTGAAAGAGCATGG
AATCCCCCTCGTCCATCATCTGCCAGGCGTTGGGAAGAATCTCCAAGACC
ATCTTGAAGTCTACGTCCAACAGGTAGATTGTTTGTTCTCTCAAGTGTTT
TAATTCGTGCTATTCAAGATGATAAGGATTTTTATTCATTTGTTGCCTTC
ATTATCTTGGTCTCCAGGGTTTGTTGTTGTACTAGTGACGAATGTTGCCG
AAGTGTTGGTCTTTGTTGACGATGCTGCTGATCGGGAACATAATGTGTTA
TGTGATCTTTTTCTGCACTTCTCCAAACCTGAACCAAGACTGTTCCATCC
TCTTGGATTTGTTTTCTTCATATTCCTTTCGTTTCGTATTATCGGATAAG
GTGAACACACATCGAATACGTTTTCAACAATATGAAATGATGTTCGATTA
GACGTTTCTTCTTTTCTAAATGTGTGTCAAATTAAATTAAATTTAGTTTA
TGAATTGTTCTATCGAGCAGTAGTGCTTTTTTGCTGTGGTTATTTCAATA
AGATTGCTGTTTTAATTAAAAAGGAAAATTTCATAATATCACAAGTAAAG
GAAGAAAGCGAAAATAACTGCGGGTACCTGATTCGAATCTCATTTCAGGC
GAATGATAATGTTTGGAAGGAAGTATTCATTTGCCAAAATGAATTTTTCT
GTTTTTATTTCAGAGATGCACGCAACCAGTGACATTATACAAGCAGACAC
GTTTATGGTACATGCCGTTCATTGGTTCACAATGGTTCATGACGCGCACA
GGTGATTGCGCTACCAACAGTTTGGAGACAGGTGGTTTCATCCGAAGTAG
AGAAGGTGTACCTCACCCTGACATCCAAATCCACTTTCTACCGTTCGCCG
TCAAAGATCACGGCCGTGTTTTCCCAGATGGTCATGCTTATCAGGTAAGC
ACGACATCGTTTTCAAAGTTTACCATTTGATTGCTTGCATTTTGCATTTA
AAACCAAATTTCAAAACCCTTCACATTGCTGACAGTAAGCATTTTTCTAA
AACAGGTAAATTCGAAAAAACAGCACGATGAAAAGCCCAATTCCAGCCTC
GTTTGCAATTTTGTCCGGAATATACATTTTAAGACCCGGGTTTCCATAAT
CAGCATAAAATTTCCGTTCCAACGGTGTATAACAACCCTATTCACCTTCT
AGGTTAAGCAAAGATGTCTATAACTCGAGATAATGAAAAATGTTATTCTC
TGCTTCTATGCAAACTTCTATGCTCATGACCTTCTTCTTGTTTTGTTTCT
TCAGTTCCATTCAGGTACGATGCGAGAGACGAGCGTTGGAACATTGAAAT
TGAAATCGAGTGACCCACGTGATCATCCAATTCTCGACCCAAACTACCTG
GACACCCCTGATGACATTGTAGACCTGAGGAACGCTGTCAAATTATCACG
TGAAATCATGTCTCAAAAAGCTTTCGATCCTTTCCGTGGCGATGAAATGT
TACCAGGTGAGTGTTGTTTTGGTGTGTAAATTGTTCGTGTTTTCACACTT
TGATTCTAACAGCTTTGGATGGTAAGCTCGTGACCGTTTGTACTTTTGAA
ATTTGCTTTTTCAGGGTCTCATGTTCAATCAGACGAAGAAATTGATGCTT
TCATTCGCGAACATGGAGATTCTGCATATCATCCTTCATGCACTTGCAAA
ATGGGAGCCTCTGATGACCCCTTGGCTGTCACTGATTCCCAGACTCGTGT
GCACGGCCTTCAAAACCTACGGATCGTTGACGCATCTATCATGCCATCCG
TTGTCAGTGGCAACTTAAACGGCCCTGTCATCATGATGGCGGAAAAAGCT
GCGGATATCATCCGTGGTCGTGATCCGCTTCCCAAATCAACAGCACCCGT
CTACGAAACTCCTGCTACTGGCCAACGATAATGTGATAGGTTTCCTGCAA
AAGATTTAGTATCTCCTTCGTAGCATGTGTGCAAGGAGCACTATCTTTCC
AAAGATGGATACAACATTAAGAATTTAGACGGTCATCTTTTTAGTTTTTT
TTTTAAATTTAAATTAAATGAATTTTTTTAAGATTAAATTTTAATATATT
AAATTGTTAATATTAAAATAATAATGGAGATTTTTAATTGATTACAATGA
AAGAAAGAGAAAGTATATTTTTACAAAAAAATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010344	XLOC_010344	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000300	supercontig	sc0000300:35860..41392 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.44732	9.69774	3.24166	9.60823	5.77931	3.56791	12.707	13.7865	0.0205876	0.0497926	0.000754383	0.00981244	0.00520938	7.14616e-05	3.44244	6.14816	5.84168	5.97489	6.5871	3.74861	3.82777	0.420385	7.80114	11.0675	0.169896	3.24891	0.782497	5.72589	15.864	11.1861

Blast

[Close]

BLAST of TCONS_00018442 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 729.939 bits (1883), Expect = 0.000e+0
Identity = 352/565 (62.30%), Postives = 423/565 (74.87%), Query Frame = 1

Query:  109 RNLSATSQFSSANQNFDSSHDYVIVGTGSAGCVLSNRLTEDGENTVLALEAGPKDPW-----WQWKIHMPAAMTYNLCNDNYNWYYHTAPQKGLNNRVLYWPRGRVWGGSSGLNAMVYVRGHAHDYDRWQSEGAEGWSYADCLPYFRKSQTHQEGGDDYRGGEGPLHVSRGTMSNPLHQAFLEAGQQAGYQYVDDLNGFQQEGVGPFDRTIHNGKRWSASQAYLHPVLERKNLTAQDRAMTLKVIFEGDKAVGVEYMHKNKIKRAKANKEVILSGGSINTPQLLMLSGVGDENELKEHGIPLVHHLPGVGKNLQDHLEVYVQQRCTQPVTLYKQTRLWYMPFIGSQWFMTRTGDCATNSLETGGFIRSREGVPHPDIQIHFLPFAVKDHGRVFPDGHAYQFHSGTMRETSVGTLKLKSSDPRDHPILDPNYLDTPDDIVDLRNAVKLSREIMSQKAFDPFRGDEMLPGSHVQSDEEIDAFIREHGDSAYHPSCTCKMGASDDPLAVTDSQTRVHGLQNLRIVDASIMPSVVSGNLNGPVIMMAEKAADIIRGRDPLPKSTAPVYE 1788
            ++L A +  S+ +++ D  + YV+VG GSAGCVL+ RLTED    VL LEAGPKD         WKIHMPAA+  NLC+D YNW YHT  Q+GL+ RVLYWPRGRVWGGSS LNAMVYVRGHA DY+RWQ +GA GW YA CLPYFRK+Q H+ G   YRG +GPL VSRG  ++PLH AFLEA QQAGY   +D+NGFQQEG G  D TIH GKRWSA+ AYLHP L R NL A+   +  +V+FEG +AVGVEY+   +  RA A+KEVILSGG+IN+PQLLMLSG+G+ ++LK+ GIP+V HLPGVG+NLQDHLE+Y+QQ CT+P+TL+   +      IG +W    TG+ AT  LETGGFIRS+ GVPHPDIQ HFLP  V DHGRV     AYQ H G MR TSVG LKL+S++P+DHP++ PNYL T  DI D R  VKL+REI +Q+A  PFRG E+ PGSH+QSD+EIDAF+R   DSAYHPSCTCKMG   DP AV D QTRV G++NLR+VDASIMPS+VSGNLN P IM+AEKAADII+G+  L     PVY+
Sbjct:   23 QSLGARALASAGSESRDE-YSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIKGQPALWDKDVPVYK 586

The following BLAST results are available for this feature:

BLAST of TCONS_00018442 vs. Swiss-Prot (Human)

BLAST of TCONS_00018442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CHDH	0.000e+0	62.30	Choline dehydrogenase, mitochondrial OS=Homo sapie...	[more]

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TCONS_00018442 (transcript) - C. hemisphaerica