XLOC_010344 (gene) - C. hemisphaerica

Overview
NameXLOC_010344
Unique NameXLOC_010344
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000300:35860..41398-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_010344 ID=XLOC_010344|Name=XLOC_010344|organism=Clytia hemisphaerica|type=gene|length=5539bp|location=Sequence derived from alignment at sc0000300:35860..41398- (Clytia hemisphaerica)
CAGAGAAAAAAAATAACAAAAAAATCTTTGCATGTTGCAGATGGTTAAGC TGAAGTATCAAAAGAAATGCTCAAACTCTTCAGAAGGCGAAAGGGCATCA CATCTCGTTCACTGAGAAATTGTGAGTCGAATTTGTGCACATCTAGTTCA CTGAGAAATTGTGAGTCGAATTTGTGAAATCTCTGAACATTTCATCATAT ATGATTTCATCCAGCGCAGATGGTTGGTTTCTTGAAATTTCGAAATGGAG AATTATTTCCAGCCAGAACTTTCAATGTATGTTATATTTATATAATCCGA GAGTTGATCCCTTTTCTTTTATGATTTCTAACATGTTATTAAAATGTTTT CAGTGTCTGCGACGTCACAATTTTCATCAGCCAATCAGAACTTCGACAGC AGTCATGATTACGTCATTGTAGGAACCGGCTCAGCTGGATGCGTTCTTTC CAATCGTCTAACTGAAGATGGAGAAAACACGGTCCTGGCTCTTGAAGCTG GCCCTAAAGACCCTTGGTGGCAATGGAAGATTCACATGCCGGCAGCGATG ACGTACAACTTATGCAACGATAACTACAATTGGTATTATCACACTGCTCC TCAGAAAGGCTTGAATAATCGGTGAGCATAACCTCGTTTGTTTGGATTTG TCTCTGGAAATTAGCGAACTAGGTTTGTACTACCCATTGGTTCCCATCAC ACTTTTATTGTAGGTATACAGTGAACTCTCTCTCTCTCTCTCTTATTCGA AGTTCTATTATTCGAATCTTTCTGTAATACGAACTAAAATACTGGTCCCC TTAGCTGAAAAGTCATATAAAATATTATCATAATAATATTGTAATTCGNA AAATACTGGTCCCCTTAGCTGAAAAGTCATATAAAATATTATTATAATAA TATTGTAATTCGAATCTTTCTGATAAAGTTTTCCTTTCATGATTATTTTC AAATCGTTTAGAGTGTTGTATTGGCCACGTGGTCGTGTATGGGGCGGCTC GTCGGGCCTCAACGCCATGGTGTACGTTCGCGGGCACGCCCATGATTATG ATCGATGGCAGTCGGAAGGAGCGGAAGGGTGGTCTTATGCTGATTGTCTC CCTTATTTCAGAAAATCGCAGACACATCAAGAAGGTGAGCATCTTGCAGC AAGAATGAGATAGGAGCTAAATACTAATAAGGATTACAGGGTAACTGGAG GGTTCTTTTTTCTTTTCACTTGGTTTTCGAAACCGGGTGTGAAATCTTTT GGTACACAATATTGACTAAGAAAACGCAAAAGATGCTCTTGAAAACTTTG TAAAAGTATCCTCTTTGATCCTTTTACAGGAGGAGACGACTACCGTGGTG GTGAGGGTCCCCTTCACGTGTCACGTGGTACAATGAGCAACCCTCTTCAC CAGGCCTTTTTGGAAGCAGGTCAACAAGCTGGATATCAATATGTCGATGA TCTGAACGGCTTCCAACAAGAAGGTATCCTTTTCAAATATTCACTTAAGT ACTAAACCCATTTTACTTGACCGATTGTGAATCGTATTTTATTTCTCACC ACTTCAGATTTCTGTAAAACTTGCACTTTTTGTGGTGTTTTTGCGAATTA AAATATCGACATATTCCCAGCATTTTTTGCATCTATGATACTACCATTGC AAAACTAGATGTCTATCAATACCCATTCCAGATAAAATTGCTCTTATTGC TTCTGGTTTGAACCTAAAGATTTTGTTTAGCTTAAAAATCATTATTTTCA TTTCTCAGGTGTTGGGCCGTTCGATCGAACTATCCACAACGGAAAACGTT GGAGTGCTTCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGAAGAACCTT ACCGCTCAAGACCGCGCGATGACATTGAAAGTCATTTTCGAAGGTGACAA AGCAGTGGGTGTGGAATACATGCACAAAAATAAAATCAAACGCGCAAAAG CAAATAAAGAAGTCATCCTATCAGGTACGTATCTCCTTCATTATGAAATT CCACTTCTAAACTAATTCTTTTCAAATGTTTCAAATGTTGTTGCTTTTAA TAATGGTCCAAGCCTCTACTTTACAGACAGCGGTTCGATTCAGTGGATTA GTACATCAACCAAATATTCAGTGGTCAACTCGACCGCCATATTTAACATT TTTTTGAATTTCATCTCACAGGTGGCTCGATCAACACACCACAGTTGTTG ATGTTGTCGGGTGTGGGCGACGAGAANTATCCTCTTTAATCCTTTTATAG GAGGAGACGACTACCGTGGTGGTGAGGGTCCCCTTCACGTGTCACGTGGT ACAATGAGCAACCCTCTTCACCAGGCCTTTTTGAAAGCAGGTCAACAAGC TGGATATCAATATGTCGATGATCTGAACGGCTTCCAACAAGAAGGTATCC TTTTCAAATATCCATTTTACTTGACCGATTGTGAATCGTATTTTATTTCT CACCACTTCAGATTTCTGTAAAACTTGCACTTTTTGTGATGTTTTTGCGA ATTAAAACATCAACATATTCCCAGCATTTTTTGCGTTATACATCTATGAT ACAACCATTGCAAAACTAGATGCCAATCCATACCCATTCCAGATAAAAAT CAGTGGCCCTTATTGCTTTTGGTTTGAACCTAAAGATTTTCTTTAGCGAC AACCATTATTTCTCAGGTGTTGGGCCGTTCGATCGAACTATCCACAACGG AAAACGTTGGAGTGCTTCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGA AGAACCTTACCGCTCAAGACCGCGCGATGACATTGAAAGTCATTTTCGAA GGTGACAAAGCAGTGGGTGTGGAATACATGCACAAAAATAAAATCAAACG CGCAAAAGCAAATAAAGAAGTCATCCTATCAGGTACGTATCTCCTTCATT ATGAAATTCCACTTCTAAACTAATTCTTTTCAAATGTTTCAAATGTTGTT GCTTTTAATAATGGTCCAAGCCTCTACTTTACAGACAGCAGTTCGATTCA GTGGATTAGTACATCAACCAAATATTCAGTGGTCAACTCGACCGCCATAT TTAACATTTTTTTGAATTTCATCTCACAGGTGGCTCGATCAACACACCAC AGTTGTTGATGTTGTCGGGTGTGGGTGACGAGAATGAGTTGAAAGAGCAT GGAATCCCCCTCGTCCATCATCTGCCAGGCGTTGGGAAGAATCTCCAAGA CCATCTTGAAGTCTACGTCCAGCAGGTAGATAGTTTGTTCTCTCAAGTGT TTTAATTCGTGCTATTCAAGATGATAAGGATTTTTATTCATTTNACCGCC ATATTTAACATTTTTTTGAATTTCATCTCACAGGTGGCTCGATCAACACA CCACAGTTGTTGATGTTGTCGGGTGTGGGCGACGAGAATGAGTTGAAAGA GCATGGAATCCCCCTCGTCCATCATCTGCCAGGCGTTGGGAAGAATCTCC AAGACCATCTTGAAGTCTACGTCCAACAGGTAGATTGTTTGTTCTCTCAA GTGTTTTAATTCGTGCTATTCAAGATGATAAGGATTTTTATTCATTTGTT GCCTTCATTATCTTGGTCTCCAGGGTTTGTTGTTGTACTAGTGACGAATG TTGCCGAAGTGTTGGTCTTTGTTGACGATGCTGCTGATCGGGAACATAAT GTGTTATGTGATCTTTTTCTGCACTTCTCCAAACCTGAACCAAGACTGTT CCATCCTCTTGGATTTGTTTTCTTCATATTCCTTTCGTTTCGTATTATCG GATAAGGTGAACACACATCGAATACGTTTTCAACAATATGAAATGATGTT CGATTAGACGTTTCTTCTTTTCTAAATGTGTGTCAAATTAAATTAAATTT AGTTTATGAATTGTTCTATCGAGCAGTAGTGCTTTTTTGCTGTGGTTATT TCAATAAGATTGCTGTTTTAATTAAAAAGGAAAATTTCATAATATCACAA GTAAAGGAAGAAAGCGAAAATAACTGCGGGTACCTGATTCGAATCTCATT TCAGGCGAATGATAATGTTTGGAAGGAAGTATTCATTTGCCAAAATGAAT TTTTCTGTTTTTATTTCAGAGATGCACGCAACCAGTGACATTATACAAGC AGACACGTTTATGGTACATGCCGTTCATTGGTTCACAATGGTTCATGACG CGCACAGGTGATTGCGCTACCAACAGTTTGGAGACAGGTGGTTTCATCCG AAGTAGAGAAGGTGTACCTCACCCTGACATCCAAATCCACTTTCTACCGT TCGCCGTCAAAGATCACGGCCGTGTTTTCCCAGATGGTCATGCTTATCAG GTAAGCACGACATCGTTTTCAAAGTTTACCATTTGATTGCTTGCATTTTG CATTTAAAACCAAATTTCAAAACCCTTCACATTGCTGACAGTAAGCATTT TTCTAAAACAGGTAAATTCGAAAAAACAGCACGATGAAAAGCCCAATTCC AGCCTCGTTTGCAATTTTGTCCGGAATATACATTTTAAGACCCGGGTTTC CATAATCAGCATAAAATTTCCGTTCCAACGGTGTATAACAACCCTATTCA CCTTCTAGGTTAAGCAAAGATGTCTATAACTCGAGATAATGAAAAATGTT ATTCTCTGCTTCTATGCAAACTTCTATGCTCATGACCTTCTTCTTGTTTT GTTTCTTCAGTTCCATTCAGGTACGATGCGAGAGACGAGCGTTGGAACAT TGAAATTGAAATCGAGTGACCCACGTGATCATCCAATTCTCGACCCAAAC TACCTGGACACCCCTGATGACATTGTAGACCTGAGGAACGCTGTCAAATT ATCACGTGAAATCATGTCTCAAAAAGCTTTCGATCCTTTCCGTGGCGATG AAATGTTACCAGGTGAGTGTTGTTTTGGTGTGTAAATTGTTCGTGTTTTC ACACTTTGATTCTAACAGCTTTGGATGGTAAGCTCGTGACCGTTTGTACT TTTGAAATTTGCTTTTTCAGGGTCTCATGTTCAATCAGACGAAGAAATTG ATGCTTTCATTCGCGAACATGGAGATTCTGCATATCATCCTTCATGCACT TGCAAAATGGGAGCCTCTGATGACCCCTTGGCTGTCACTGATTCCCAGAC TCGTGTGCACGGCCTTCAAAACCTACGGATCGTTGACGCATCTATCATGC CATCCGTTGTCAGTGGCAACTTAAACGGCCCTGTCATCATGATGGCGGAA AAAGCTGCGGATATCATCCGTGGTCGTGATCCGCTTCCCAAATCAACAGC ACCCGTCTACGAAACTCCTGCTACTGGCCAACGATAATGTGATAGGTTTC CTGCAAAAGATTTAGTATCTCCTTCGTAGCATGTGTGCAAGGAGCACTAT CTTTCCAAAGATGGATACAACATTAAGAATTTAGACGGTCATCTTTTTAG TTTTTTTTTTAAATTTAAATTAAATGAATTTTTTTAAGATTAAATTTTAA TATATTAAATTGTTAATATTAAAATAATAATGGAGATTTTTAATTGATTA CAATGAAAGAAAGAGAAAGTATATTTTTACAAAAAAATG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00018466TCONS_00018466Clytia hemisphaericatranscript
TCONS_00018465TCONS_00018465Clytia hemisphaericatranscript
TCONS_00018464TCONS_00018464Clytia hemisphaericatranscript
TCONS_00018463TCONS_00018463Clytia hemisphaericatranscript
TCONS_00018462TCONS_00018462Clytia hemisphaericatranscript
TCONS_00018461TCONS_00018461Clytia hemisphaericatranscript
TCONS_00018460TCONS_00018460Clytia hemisphaericatranscript
TCONS_00018459TCONS_00018459Clytia hemisphaericatranscript
TCONS_00018458TCONS_00018458Clytia hemisphaericatranscript
TCONS_00018457TCONS_00018457Clytia hemisphaericatranscript
TCONS_00018456TCONS_00018456Clytia hemisphaericatranscript
TCONS_00018455TCONS_00018455Clytia hemisphaericatranscript
TCONS_00018454TCONS_00018454Clytia hemisphaericatranscript
TCONS_00018453TCONS_00018453Clytia hemisphaericatranscript
TCONS_00018452TCONS_00018452Clytia hemisphaericatranscript
TCONS_00018451TCONS_00018451Clytia hemisphaericatranscript
TCONS_00018450TCONS_00018450Clytia hemisphaericatranscript
TCONS_00018449TCONS_00018449Clytia hemisphaericatranscript
TCONS_00018448TCONS_00018448Clytia hemisphaericatranscript
TCONS_00018447TCONS_00018447Clytia hemisphaericatranscript
TCONS_00018446TCONS_00018446Clytia hemisphaericatranscript
TCONS_00018445TCONS_00018445Clytia hemisphaericatranscript
TCONS_00018444TCONS_00018444Clytia hemisphaericatranscript
TCONS_00018443TCONS_00018443Clytia hemisphaericatranscript
TCONS_00018442TCONS_00018442Clytia hemisphaericatranscript
TCONS_00018441TCONS_00018441Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00018452-proteinTCONS_00018452-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:35860..41398 -
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
CHDHPREDICTED: choline dehydrogenase, mitochondrial isoform X1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
95.17 84.92 85.22 97.4 86.59 81.23 193.35 219.27 82.22 89.21 65.72 48.86 40.51 44.68 45.45 59.97 62.54 55.54 43.41 34.63 38.61 42.83 84.66 77.08 85.04 82.76 30.47 29.28 99.62 100.37