TCONS_00018449 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018449
Unique Name	TCONS_00018449
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2065

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000300:35860..41393-

transcript sequence

>TCONS_00018449 ID=TCONS_00018449|Name=TCONS_00018449|organism=Clytia hemisphaerica|type=transcript|length=2065bp
aaaaaaaataacaaaaaaatctttgCATGTTGCAGATGGTTAAGCTGAAG
TATCAAAAGAAATGCTCAAACTCTTCAGAAGGCGAAAGGGCATCACATCT
AGTTCACTGAGAAATTTGTCTGCGACGTCACAATTTTCATCAGCCAATCA
GAACTTCGACAGCAGTCATGATTACGTCATTGTAGGAACCGGCTCAGCTG
GATGCGTTCTTTCCAATCGTCTAACTGAAGATGGAGAAAACACGGTCCTG
GCTCTTGAAGCTGGCCCTAAAGACCCTTGGTGGCAATGGAAGATTCACAT
GCCGGCAGCGATGACGTACAACTTATGCAACGATAACTACAATTGGTATT
ATCACACTGCTCCTCAGAAAGGCTTGAATAATCGAGTGTTGTATTGGCCA
CGTGGTCGTGTATGGGGCGGCTCGTCGGGCCTCAACGCCATGGTGTACGT
TCGCGGGCACGCCCATGATTATGATCGATGGCAGTCGGAAGGAGCGGAAG
GGTGGTCTTATGCTGATTGTCTCCCTTATTTCAGAAAATCGCAGACACAT
CAAGAAGGAGGAGACGACTACCGTGGTGGTGAGGGTCCCCTTCACGTGTC
ACGTGGTACAATGAGCAACCCTCTTCACCAGGCCTTTTTGGAAGCAGGTC
AACAAGCTGGATATCAATATGTCGATGATCTGAACGGCTTCCAACAAGAA
GGTGTTGGGCCGTTCGATCGAACTATCCACAACGGAAAACGTTGGAGTGC
TTCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGAAGAACCTTACCGCTC
AAGACCGCGCGATGACATTGAAAGTCATTTTCGAAGGTGACAAAGCAGTG
GGTGTGGAATACATgcacaaaaataaaatcaaacgcgcaaaagcaaataa
agaagtcatccTATCAGGTGGCTCGATCAACACACCACAGTTGTTGATGT
TGTCGGGTGTGGGTGACGAGAATGAGTTGAAAGAGCATGGAATCCCCCTC
GTCCATCATCTGCCAGGCGTTGGGAAGAATCTCCAAGACCATCTTGAAGT
CTACGTCCAGCAGAGATGCACGCAACCAGTGACATTATACAAGCAGACAC
GTTTATGGTACATGCCGTTCATTGGTTCACAATGGTTCATGACGCGCACA
GGTGATTGCGCTACCAACAGTTTGGAGACAGGTGGTTTCATCCGAAGTAG
AGAAGGTGTACCTCACCCTGACATCCAAATCCACTTTCTACCGTTCGCCG
TCAAAGATCACGGCCGTGTTTTCCCAGATGGTCATGCTTATCAGTTCCAT
TCAGGTACGATGCGAGAGACGAGCGTTGGAACATTGAAATTGAAATCGAG
TGACCCACGTGATCATCCAATTCTCGACCCAAACTACCTGGACACCCCTG
ATGACATTGTAGACCTGAGGAACGCTGTCAAATTATCACGTGAAATCATG
TCTCAAAAAGCTTTCGATCCTTTCCGTGGCGATGAAATGTTACCAGGGTC
TCATGTTCAATCAGACGAAGAAATTGATGCTTTCATTCGCGAACATGGAG
ATTCTGCATATCATCCTTCATGCACTTGCAAAATGGGAGCCTCTGATGAC
CCCTTGGCTGTCACTGATTCCCAGACTCGTGTGCACGGCCTTCAAAACCT
ACGGATCGTTGACGCATCTATCATGCCATCCGTTGTCAGTGGCAACTTAA
ACGGCCCTGTCATCATGATGGCGGAAAAAGCTGCGGATATCATCCGTGGT
CGTGATCCGCTTCCCAAATCAACAGCACCCGTCTACGAAACTCCTGCTAC
TGGCCAACGATAATGTGATAGGTTTCCTGCAAAAGATTTAGTATCTCCTT
CGTAGCATGTGTGCAAGGAGCACTATCTTTCCAAAGATGGATACAACATT
AAGAATTTAGACGGTcatctttttagttttttttttaaatttaaattaaa
tgaatttttttaagattaaatTTTAATATATTAAATTGTTAATATTAAAA
TAATAATGGAGATTTTTAATTGATTACAATGAAAGAAAGAGAAagtatat
ttttacaaaaaaatg

Run BLAST on NCBI

transcript from alignment at sc0000300:35860..41393-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018449 ID=TCONS_00018449|Name=TCONS_00018449|organism=Clytia hemisphaerica|type=transcript|length=5534bp|location=Sequence derived from alignment at sc0000300:35860..41393- (Clytia hemisphaerica)
AAAAAAAATAACAAAAAAATCTTTGCATGTTGCAGATGGTTAAGCTGAAG
TATCAAAAGAAATGCTCAAACTCTTCAGAAGGCGAAAGGGCATCACATCT
CGTTCACTGAGAAATTGTGAGTCGAATTTGTGCACATCTAGTTCACTGAG
AAATTGTGAGTCGAATTTGTGAAATCTCTGAACATTTCATCATATATGAT
TTCATCCAGCGCAGATGGTTGGTTTCTTGAAATTTCGAAATGGAGAATTA
TTTCCAGCCAGAACTTTCAATGTATGTTATATTTATATAATCCGAGAGTT
GATCCCTTTTCTTTTATGATTTCTAACATGTTATTAAAATGTTTTCAGTG
TCTGCGACGTCACAATTTTCATCAGCCAATCAGAACTTCGACAGCAGTCA
TGATTACGTCATTGTAGGAACCGGCTCAGCTGGATGCGTTCTTTCCAATC
GTCTAACTGAAGATGGAGAAAACACGGTCCTGGCTCTTGAAGCTGGCCCT
AAAGACCCTTGGTGGCAATGGAAGATTCACATGCCGGCAGCGATGACGTA
CAACTTATGCAACGATAACTACAATTGGTATTATCACACTGCTCCTCAGA
AAGGCTTGAATAATCGGTGAGCATAACCTCGTTTGTTTGGATTTGTCTCT
GGAAATTAGCGAACTAGGTTTGTACTACCCATTGGTTCCCATCACACTTT
TATTGTAGGTATACAGTGAACTCTCTCTCTCTCTCTCTTATTCGAAGTTC
TATTATTCGAATCTTTCTGTAATACGAACTAAAATACTGGTCCCCTTAGC
TGAAAAGTCATATAAAATATTATCATAATAATATTGTAATTCGNAAAATA
CTGGTCCCCTTAGCTGAAAAGTCATATAAAATATTATTATAATAATATTG
TAATTCGAATCTTTCTGATAAAGTTTTCCTTTCATGATTATTTTCAAATC
GTTTAGAGTGTTGTATTGGCCACGTGGTCGTGTATGGGGCGGCTCGTCGG
GCCTCAACGCCATGGTGTACGTTCGCGGGCACGCCCATGATTATGATCGA
TGGCAGTCGGAAGGAGCGGAAGGGTGGTCTTATGCTGATTGTCTCCCTTA
TTTCAGAAAATCGCAGACACATCAAGAAGGTGAGCATCTTGCAGCAAGAA
TGAGATAGGAGCTAAATACTAATAAGGATTACAGGGTAACTGGAGGGTTC
TTTTTTCTTTTCACTTGGTTTTCGAAACCGGGTGTGAAATCTTTTGGTAC
ACAATATTGACTAAGAAAACGCAAAAGATGCTCTTGAAAACTTTGTAAAA
GTATCCTCTTTGATCCTTTTACAGGAGGAGACGACTACCGTGGTGGTGAG
GGTCCCCTTCACGTGTCACGTGGTACAATGAGCAACCCTCTTCACCAGGC
CTTTTTGGAAGCAGGTCAACAAGCTGGATATCAATATGTCGATGATCTGA
ACGGCTTCCAACAAGAAGGTATCCTTTTCAAATATTCACTTAAGTACTAA
ACCCATTTTACTTGACCGATTGTGAATCGTATTTTATTTCTCACCACTTC
AGATTTCTGTAAAACTTGCACTTTTTGTGGTGTTTTTGCGAATTAAAATA
TCGACATATTCCCAGCATTTTTTGCATCTATGATACTACCATTGCAAAAC
TAGATGTCTATCAATACCCATTCCAGATAAAATTGCTCTTATTGCTTCTG
GTTTGAACCTAAAGATTTTGTTTAGCTTAAAAATCATTATTTTCATTTCT
CAGGTGTTGGGCCGTTCGATCGAACTATCCACAACGGAAAACGTTGGAGT
GCTTCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGAAGAACCTTACCGC
TCAAGACCGCGCGATGACATTGAAAGTCATTTTCGAAGGTGACAAAGCAG
TGGGTGTGGAATACATGCACAAAAATAAAATCAAACGCGCAAAAGCAAAT
AAAGAAGTCATCCTATCAGGTACGTATCTCCTTCATTATGAAATTCCACT
TCTAAACTAATTCTTTTCAAATGTTTCAAATGTTGTTGCTTTTAATAATG
GTCCAAGCCTCTACTTTACAGACAGCGGTTCGATTCAGTGGATTAGTACA
TCAACCAAATATTCAGTGGTCAACTCGACCGCCATATTTAACATTTTTTT
GAATTTCATCTCACAGGTGGCTCGATCAACACACCACAGTTGTTGATGTT
GTCGGGTGTGGGCGACGAGAANTATCCTCTTTAATCCTTTTATAGGAGGA
GACGACTACCGTGGTGGTGAGGGTCCCCTTCACGTGTCACGTGGTACAAT
GAGCAACCCTCTTCACCAGGCCTTTTTGAAAGCAGGTCAACAAGCTGGAT
ATCAATATGTCGATGATCTGAACGGCTTCCAACAAGAAGGTATCCTTTTC
AAATATCCATTTTACTTGACCGATTGTGAATCGTATTTTATTTCTCACCA
CTTCAGATTTCTGTAAAACTTGCACTTTTTGTGATGTTTTTGCGAATTAA
AACATCAACATATTCCCAGCATTTTTTGCGTTATACATCTATGATACAAC
CATTGCAAAACTAGATGCCAATCCATACCCATTCCAGATAAAAATCAGTG
GCCCTTATTGCTTTTGGTTTGAACCTAAAGATTTTCTTTAGCGACAACCA
TTATTTCTCAGGTGTTGGGCCGTTCGATCGAACTATCCACAACGGAAAAC
GTTGGAGTGCTTCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGAAGAAC
CTTACCGCTCAAGACCGCGCGATGACATTGAAAGTCATTTTCGAAGGTGA
CAAAGCAGTGGGTGTGGAATACATGCACAAAAATAAAATCAAACGCGCAA
AAGCAAATAAAGAAGTCATCCTATCAGGTACGTATCTCCTTCATTATGAA
ATTCCACTTCTAAACTAATTCTTTTCAAATGTTTCAAATGTTGTTGCTTT
TAATAATGGTCCAAGCCTCTACTTTACAGACAGCAGTTCGATTCAGTGGA
TTAGTACATCAACCAAATATTCAGTGGTCAACTCGACCGCCATATTTAAC
ATTTTTTTGAATTTCATCTCACAGGTGGCTCGATCAACACACCACAGTTG
TTGATGTTGTCGGGTGTGGGTGACGAGAATGAGTTGAAAGAGCATGGAAT
CCCCCTCGTCCATCATCTGCCAGGCGTTGGGAAGAATCTCCAAGACCATC
TTGAAGTCTACGTCCAGCAGGTAGATAGTTTGTTCTCTCAAGTGTTTTAA
TTCGTGCTATTCAAGATGATAAGGATTTTTATTCATTTNACCGCCATATT
TAACATTTTTTTGAATTTCATCTCACAGGTGGCTCGATCAACACACCACA
GTTGTTGATGTTGTCGGGTGTGGGCGACGAGAATGAGTTGAAAGAGCATG
GAATCCCCCTCGTCCATCATCTGCCAGGCGTTGGGAAGAATCTCCAAGAC
CATCTTGAAGTCTACGTCCAACAGGTAGATTGTTTGTTCTCTCAAGTGTT
TTAATTCGTGCTATTCAAGATGATAAGGATTTTTATTCATTTGTTGCCTT
CATTATCTTGGTCTCCAGGGTTTGTTGTTGTACTAGTGACGAATGTTGCC
GAAGTGTTGGTCTTTGTTGACGATGCTGCTGATCGGGAACATAATGTGTT
ATGTGATCTTTTTCTGCACTTCTCCAAACCTGAACCAAGACTGTTCCATC
CTCTTGGATTTGTTTTCTTCATATTCCTTTCGTTTCGTATTATCGGATAA
GGTGAACACACATCGAATACGTTTTCAACAATATGAAATGATGTTCGATT
AGACGTTTCTTCTTTTCTAAATGTGTGTCAAATTAAATTAAATTTAGTTT
ATGAATTGTTCTATCGAGCAGTAGTGCTTTTTTGCTGTGGTTATTTCAAT
AAGATTGCTGTTTTAATTAAAAAGGAAAATTTCATAATATCACAAGTAAA
GGAAGAAAGCGAAAATAACTGCGGGTACCTGATTCGAATCTCATTTCAGG
CGAATGATAATGTTTGGAAGGAAGTATTCATTTGCCAAAATGAATTTTTC
TGTTTTTATTTCAGAGATGCACGCAACCAGTGACATTATACAAGCAGACA
CGTTTATGGTACATGCCGTTCATTGGTTCACAATGGTTCATGACGCGCAC
AGGTGATTGCGCTACCAACAGTTTGGAGACAGGTGGTTTCATCCGAAGTA
GAGAAGGTGTACCTCACCCTGACATCCAAATCCACTTTCTACCGTTCGCC
GTCAAAGATCACGGCCGTGTTTTCCCAGATGGTCATGCTTATCAGGTAAG
CACGACATCGTTTTCAAAGTTTACCATTTGATTGCTTGCATTTTGCATTT
AAAACCAAATTTCAAAACCCTTCACATTGCTGACAGTAAGCATTTTTCTA
AAACAGGTAAATTCGAAAAAACAGCACGATGAAAAGCCCAATTCCAGCCT
CGTTTGCAATTTTGTCCGGAATATACATTTTAAGACCCGGGTTTCCATAA
TCAGCATAAAATTTCCGTTCCAACGGTGTATAACAACCCTATTCACCTTC
TAGGTTAAGCAAAGATGTCTATAACTCGAGATAATGAAAAATGTTATTCT
CTGCTTCTATGCAAACTTCTATGCTCATGACCTTCTTCTTGTTTTGTTTC
TTCAGTTCCATTCAGGTACGATGCGAGAGACGAGCGTTGGAACATTGAAA
TTGAAATCGAGTGACCCACGTGATCATCCAATTCTCGACCCAAACTACCT
GGACACCCCTGATGACATTGTAGACCTGAGGAACGCTGTCAAATTATCAC
GTGAAATCATGTCTCAAAAAGCTTTCGATCCTTTCCGTGGCGATGAAATG
TTACCAGGTGAGTGTTGTTTTGGTGTGTAAATTGTTCGTGTTTTCACACT
TTGATTCTAACAGCTTTGGATGGTAAGCTCGTGACCGTTTGTACTTTTGA
AATTTGCTTTTTCAGGGTCTCATGTTCAATCAGACGAAGAAATTGATGCT
TTCATTCGCGAACATGGAGATTCTGCATATCATCCTTCATGCACTTGCAA
AATGGGAGCCTCTGATGACCCCTTGGCTGTCACTGATTCCCAGACTCGTG
TGCACGGCCTTCAAAACCTACGGATCGTTGACGCATCTATCATGCCATCC
GTTGTCAGTGGCAACTTAAACGGCCCTGTCATCATGATGGCGGAAAAAGC
TGCGGATATCATCCGTGGTCGTGATCCGCTTCCCAAATCAACAGCACCCG
TCTACGAAACTCCTGCTACTGGCCAACGATAATGTGATAGGTTTCCTGCA
AAAGATTTAGTATCTCCTTCGTAGCATGTGTGCAAGGAGCACTATCTTTC
CAAAGATGGATACAACATTAAGAATTTAGACGGTCATCTTTTTAGTTTTT
TTTTTAAATTTAAATTAAATGAATTTTTTTAAGATTAAATTTTAATATAT
TAAATTGTTAATATTAAAATAATAATGGAGATTTTTAATTGATTACAATG
AAAGAAAGAGAAAGTATATTTTTACAAAAAAATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010344	XLOC_010344	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000300	supercontig	sc0000300:35860..41393 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.19639e-09	0	0	0	0	0	0	0.014426	0.0233149	0.00155548	0.00811547	0.0468202	0.00212005	9.0323e-07	0	0.00267522	6.50424e-07	0	4.20626e-09	1.80171e-08	4.61071e-08	1.64369e-06	0	1.29203e-06	0	6.3467e-08	1.46081e-08	0	2.01524e-07

Blast

[Close]

BLAST of TCONS_00018449 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 729.939 bits (1883), Expect = 0.000e+0
Identity = 352/565 (62.30%), Postives = 423/565 (74.87%), Query Frame = 2

Query:  110 RNLSATSQFSSANQNFDSSHDYVIVGTGSAGCVLSNRLTEDGENTVLALEAGPKDPW-----WQWKIHMPAAMTYNLCNDNYNWYYHTAPQKGLNNRVLYWPRGRVWGGSSGLNAMVYVRGHAHDYDRWQSEGAEGWSYADCLPYFRKSQTHQEGGDDYRGGEGPLHVSRGTMSNPLHQAFLEAGQQAGYQYVDDLNGFQQEGVGPFDRTIHNGKRWSASQAYLHPVLERKNLTAQDRAMTLKVIFEGDKAVGVEYMHKNKIKRAKANKEVILSGGSINTPQLLMLSGVGDENELKEHGIPLVHHLPGVGKNLQDHLEVYVQQRCTQPVTLYKQTRLWYMPFIGSQWFMTRTGDCATNSLETGGFIRSREGVPHPDIQIHFLPFAVKDHGRVFPDGHAYQFHSGTMRETSVGTLKLKSSDPRDHPILDPNYLDTPDDIVDLRNAVKLSREIMSQKAFDPFRGDEMLPGSHVQSDEEIDAFIREHGDSAYHPSCTCKMGASDDPLAVTDSQTRVHGLQNLRIVDASIMPSVVSGNLNGPVIMMAEKAADIIRGRDPLPKSTAPVYE 1789
            ++L A +  S+ +++ D  + YV+VG GSAGCVL+ RLTED    VL LEAGPKD         WKIHMPAA+  NLC+D YNW YHT  Q+GL+ RVLYWPRGRVWGGSS LNAMVYVRGHA DY+RWQ +GA GW YA CLPYFRK+Q H+ G   YRG +GPL VSRG  ++PLH AFLEA QQAGY   +D+NGFQQEG G  D TIH GKRWSA+ AYLHP L R NL A+   +  +V+FEG +AVGVEY+   +  RA A+KEVILSGG+IN+PQLLMLSG+G+ ++LK+ GIP+V HLPGVG+NLQDHLE+Y+QQ CT+P+TL+   +      IG +W    TG+ AT  LETGGFIRS+ GVPHPDIQ HFLP  V DHGRV     AYQ H G MR TSVG LKL+S++P+DHP++ PNYL T  DI D R  VKL+REI +Q+A  PFRG E+ PGSH+QSD+EIDAF+R   DSAYHPSCTCKMG   DP AV D QTRV G++NLR+VDASIMPS+VSGNLN P IM+AEKAADII+G+  L     PVY+
Sbjct:   23 QSLGARALASAGSESRDE-YSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIKGQPALWDKDVPVYK 586

The following BLAST results are available for this feature:

BLAST of TCONS_00018449 vs. Swiss-Prot (Human)

BLAST of TCONS_00018449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CHDH	0.000e+0	62.30	Choline dehydrogenase, mitochondrial OS=Homo sapie...	[more]

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TCONS_00018449 (transcript) - C. hemisphaerica