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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018452 ID=TCONS_00018452|Name=TCONS_00018452|organism=Clytia hemisphaerica|type=transcript|length=2065bpRun BLAST on NCBI protein sequence of TCONS_00018452-protein >TCONS_00018452-protein ID=TCONS_00018452-protein|Name=TCONS_00018452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp MLKLFRRRKGITSRSLRNLSATSQFSSANQNFDSSHDYVIVGTGSAGCVLRun BLAST on NCBI transcript from alignment at sc0000300:35860..41393- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018452 ID=TCONS_00018452|Name=TCONS_00018452|organism=Clytia hemisphaerica|type=transcript|length=5534bp|location=Sequence derived from alignment at sc0000300:35860..41393- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000300:35860..41393- >TCONS_00018452 ID=TCONS_00018452|Name=TCONS_00018452|organism=Clytia hemisphaerica|type=CDS|length=19272bp|location=Sequence derived from alignment at sc0000300:35860..41393- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018452 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2) HSP 1 Score: 729.939 bits (1883), Expect = 0.000e+0 Identity = 352/565 (62.30%), Postives = 423/565 (74.87%), Query Frame = 2
Query: 110 RNLSATSQFSSANQNFDSSHDYVIVGTGSAGCVLSNRLTEDGENTVLALEAGPKDPW-----WQWKIHMPAAMTYNLCNDNYNWYYHTAPQKGLNNRVLYWPRGRVWGGSSGLNAMVYVRGHAHDYDRWQSEGAEGWSYADCLPYFRKSQTHQEGGDDYRGGEGPLHVSRGTMSNPLHQAFLEAGQQAGYQYVDDLNGFQQEGVGPFDRTIHNGKRWSASQAYLHPVLERKNLTAQDRAMTLKVIFEGDKAVGVEYMHKNKIKRAKANKEVILSGGSINTPQLLMLSGVGDENELKEHGIPLVHHLPGVGKNLQDHLEVYVQQRCTQPVTLYKQTRLWYMPFIGSQWFMTRTGDCATNSLETGGFIRSREGVPHPDIQIHFLPFAVKDHGRVFPDGHAYQFHSGTMRETSVGTLKLKSSDPRDHPILDPNYLDTPDDIVDLRNAVKLSREIMSQKAFDPFRGDEMLPGSHVQSDEEIDAFIREHGDSAYHPSCTCKMGASDDPLAVTDSQTRVHGLQNLRIVDASIMPSVVSGNLNGPVIMMAEKAADIIRGRDPLPKSTAPVYE 1789
++L A + S+ +++ D + YV+VG GSAGCVL+ RLTED VL LEAGPKD WKIHMPAA+ NLC+D YNW YHT Q+GL+ RVLYWPRGRVWGGSS LNAMVYVRGHA DY+RWQ +GA GW YA CLPYFRK+Q H+ G YRG +GPL VSRG ++PLH AFLEA QQAGY +D+NGFQQEG G D TIH GKRWSA+ AYLHP L R NL A+ + +V+FEG +AVGVEY+ + RA A+KEVILSGG+IN+PQLLMLSG+G+ ++LK+ GIP+V HLPGVG+NLQDHLE+Y+QQ CT+P+TL+ + IG +W TG+ AT LETGGFIRS+ GVPHPDIQ HFLP V DHGRV AYQ H G MR TSVG LKL+S++P+DHP++ PNYL T DI D R VKL+REI +Q+A PFRG E+ PGSH+QSD+EIDAF+R DSAYHPSCTCKMG DP AV D QTRV G++NLR+VDASIMPS+VSGNLN P IM+AEKAADII+G+ L PVY+
Sbjct: 23 QSLGARALASAGSESRDE-YSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIKGQPALWDKDVPVYK 586 The following BLAST results are available for this feature:
BLAST of TCONS_00018452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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