TCONS_00018465 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018465
Unique Name	TCONS_00018465
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2070

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000300:35860..41398-

transcript sequence

>TCONS_00018465 ID=TCONS_00018465|Name=TCONS_00018465|organism=Clytia hemisphaerica|type=transcript|length=2070bp
cagagaaaaaaaataacaaaaaaatctttgCATGTTGCAGATGGTTAAGC
TGAAGTATCAAAAGAAATGCTCAAACTCTTCAGAAGGCGAAAGGGCATCA
CATCTAGTTCACTGAGAAATTTGTCTGCGACGTCACAATTTTCATCAGCC
AATCAGAACTTCGACAGCAGTCATGATTACGTCATTGTAGGAACCGGCTC
AGCTGGATGCGTTCTTTCCAATCGTCTAACTGAAGATGGAGAAAACACGG
TCCTGGCTCTTGAAGCTGGCCCTAAAGACCCTTGGTGGCAATGGAAGATT
CACATGCCGGCAGCGATGACGTACAACTTATGCAACGATAACTACAATTG
GTATTATCACACTGCTCCTCAGAAAGGCTTGAATAATCGAGTGTTGTATT
GGCCACGTGGTCGTGTATGGGGCGGCTCGTCGGGCCTCAACGCCATGGTG
TACGTTCGCGGGCACGCCCATGATTATGATCGATGGCAGTCGGAAGGAGC
GGAAGGGTGGTCTTATGCTGATTGTCTCCCTTATTTCAGAAAATCGCAGA
CACATCAAGAAGGAGGAGACGACTACCGTGGTGGTGAGGGTCCCCTTCAC
GTGTCACGTGGTACAATGAGCAACCCTCTTCACCAGGCCTTTTTGGAAGC
AGGTCAACAAGCTGGATATCAATATGTCGATGATCTGAACGGCTTCCAAC
AAGAAGGTGTTGGGCCGTTCGATCGAACTATCCACAACGGAAAACGTTGG
AGTGCTTCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGAAGAACCTTAC
CGCTCAAGACCGCGCGATGACATTGAAAGTCATTTTCGAAGGTGACAAAG
CAGTGGGTGTGGAATACATgcacaaaaataaaatcaaacgcgcaaaagca
aataaagaagtcatccTATCAGGTGGCTCGATCAACACACCACAGTTGTT
GATGTTGTCGGGTGTGGGCGACGAGAATGAGTTGAAAGAGCATGGAATCC
CCCTCGTCCATCATCTGCCAGGCGTTGGGAAGAATCTCCAAGACCATCTT
GAAGTCTACGTCCAACAGAGATGCACGCAACCAGTGACATTATACAAGCA
GACACGTTTATGGTACATGCCGTTCATTGGTTCACAATGGTTCATGACGC
GCACAGGTGATTGCGCTACCAACAGTTTGGAGACAGGTGGTTTCATCCGA
AGTAGAGAAGGTGTACCTCACCCTGACATCCAAATCCACTTTCTACCGTT
CGCCGTCAAAGATCACGGCCGTGTTTTCCCAGATGGTCATGCTTATCAGT
TCCATTCAGGTACGATGCGAGAGACGAGCGTTGGAACATTGAAATTGAAA
TCGAGTGACCCACGTGATCATCCAATTCTCGACCCAAACTACCTGGACAC
CCCTGATGACATTGTAGACCTGAGGAACGCTGTCAAATTATCACGTGAAA
TCATGTCTCAAAAAGCTTTCGATCCTTTCCGTGGCGATGAAATGTTACCA
GGGTCTCATGTTCAATCAGACGAAGAAATTGATGCTTTCATTCGCGAACA
TGGAGATTCTGCATATCATCCTTCATGCACTTGCAAAATGGGAGCCTCTG
ATGACCCCTTGGCTGTCACTGATTCCCAGACTCGTGTGCACGGCCTTCAA
AACCTACGGATCGTTGACGCATCTATCATGCCATCCGTTGTCAGTGGCAA
CTTAAACGGCCCTGTCATCATGATGGCGGAAAAAGCTGCGGATATCATCC
GTGGTCGTGATCCGCTTCCCAAATCAACAGCACCCGTCTACGAAACTCCT
GCTACTGGCCAACGATAATGTGATAGGTTTCCTGCAAAAGATTTAGTATC
TCCTTCGTAGCATGTGTGCAAGGAGCACTATCTTTCCAAAGATGGATACA
ACATTAAGAATTTAGACGGTcatctttttagttttttttttaaatttaaa
ttaaatgaatttttttaagattaaatTTTAATATATTAAATTGTTAATAT
TAAAATAATAATGGAGATTTTTAATTGATTACAATGAAAGAAAGAGAAag
tatatttttacaaaaaaatg

Run BLAST on NCBI

transcript from alignment at sc0000300:35860..41398-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018465 ID=TCONS_00018465|Name=TCONS_00018465|organism=Clytia hemisphaerica|type=transcript|length=5539bp|location=Sequence derived from alignment at sc0000300:35860..41398- (Clytia hemisphaerica)
CAGAGAAAAAAAATAACAAAAAAATCTTTGCATGTTGCAGATGGTTAAGC
TGAAGTATCAAAAGAAATGCTCAAACTCTTCAGAAGGCGAAAGGGCATCA
CATCTCGTTCACTGAGAAATTGTGAGTCGAATTTGTGCACATCTAGTTCA
CTGAGAAATTGTGAGTCGAATTTGTGAAATCTCTGAACATTTCATCATAT
ATGATTTCATCCAGCGCAGATGGTTGGTTTCTTGAAATTTCGAAATGGAG
AATTATTTCCAGCCAGAACTTTCAATGTATGTTATATTTATATAATCCGA
GAGTTGATCCCTTTTCTTTTATGATTTCTAACATGTTATTAAAATGTTTT
CAGTGTCTGCGACGTCACAATTTTCATCAGCCAATCAGAACTTCGACAGC
AGTCATGATTACGTCATTGTAGGAACCGGCTCAGCTGGATGCGTTCTTTC
CAATCGTCTAACTGAAGATGGAGAAAACACGGTCCTGGCTCTTGAAGCTG
GCCCTAAAGACCCTTGGTGGCAATGGAAGATTCACATGCCGGCAGCGATG
ACGTACAACTTATGCAACGATAACTACAATTGGTATTATCACACTGCTCC
TCAGAAAGGCTTGAATAATCGGTGAGCATAACCTCGTTTGTTTGGATTTG
TCTCTGGAAATTAGCGAACTAGGTTTGTACTACCCATTGGTTCCCATCAC
ACTTTTATTGTAGGTATACAGTGAACTCTCTCTCTCTCTCTCTTATTCGA
AGTTCTATTATTCGAATCTTTCTGTAATACGAACTAAAATACTGGTCCCC
TTAGCTGAAAAGTCATATAAAATATTATCATAATAATATTGTAATTCGNA
AAATACTGGTCCCCTTAGCTGAAAAGTCATATAAAATATTATTATAATAA
TATTGTAATTCGAATCTTTCTGATAAAGTTTTCCTTTCATGATTATTTTC
AAATCGTTTAGAGTGTTGTATTGGCCACGTGGTCGTGTATGGGGCGGCTC
GTCGGGCCTCAACGCCATGGTGTACGTTCGCGGGCACGCCCATGATTATG
ATCGATGGCAGTCGGAAGGAGCGGAAGGGTGGTCTTATGCTGATTGTCTC
CCTTATTTCAGAAAATCGCAGACACATCAAGAAGGTGAGCATCTTGCAGC
AAGAATGAGATAGGAGCTAAATACTAATAAGGATTACAGGGTAACTGGAG
GGTTCTTTTTTCTTTTCACTTGGTTTTCGAAACCGGGTGTGAAATCTTTT
GGTACACAATATTGACTAAGAAAACGCAAAAGATGCTCTTGAAAACTTTG
TAAAAGTATCCTCTTTGATCCTTTTACAGGAGGAGACGACTACCGTGGTG
GTGAGGGTCCCCTTCACGTGTCACGTGGTACAATGAGCAACCCTCTTCAC
CAGGCCTTTTTGGAAGCAGGTCAACAAGCTGGATATCAATATGTCGATGA
TCTGAACGGCTTCCAACAAGAAGGTATCCTTTTCAAATATTCACTTAAGT
ACTAAACCCATTTTACTTGACCGATTGTGAATCGTATTTTATTTCTCACC
ACTTCAGATTTCTGTAAAACTTGCACTTTTTGTGGTGTTTTTGCGAATTA
AAATATCGACATATTCCCAGCATTTTTTGCATCTATGATACTACCATTGC
AAAACTAGATGTCTATCAATACCCATTCCAGATAAAATTGCTCTTATTGC
TTCTGGTTTGAACCTAAAGATTTTGTTTAGCTTAAAAATCATTATTTTCA
TTTCTCAGGTGTTGGGCCGTTCGATCGAACTATCCACAACGGAAAACGTT
GGAGTGCTTCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGAAGAACCTT
ACCGCTCAAGACCGCGCGATGACATTGAAAGTCATTTTCGAAGGTGACAA
AGCAGTGGGTGTGGAATACATGCACAAAAATAAAATCAAACGCGCAAAAG
CAAATAAAGAAGTCATCCTATCAGGTACGTATCTCCTTCATTATGAAATT
CCACTTCTAAACTAATTCTTTTCAAATGTTTCAAATGTTGTTGCTTTTAA
TAATGGTCCAAGCCTCTACTTTACAGACAGCGGTTCGATTCAGTGGATTA
GTACATCAACCAAATATTCAGTGGTCAACTCGACCGCCATATTTAACATT
TTTTTGAATTTCATCTCACAGGTGGCTCGATCAACACACCACAGTTGTTG
ATGTTGTCGGGTGTGGGCGACGAGAANTATCCTCTTTAATCCTTTTATAG
GAGGAGACGACTACCGTGGTGGTGAGGGTCCCCTTCACGTGTCACGTGGT
ACAATGAGCAACCCTCTTCACCAGGCCTTTTTGAAAGCAGGTCAACAAGC
TGGATATCAATATGTCGATGATCTGAACGGCTTCCAACAAGAAGGTATCC
TTTTCAAATATCCATTTTACTTGACCGATTGTGAATCGTATTTTATTTCT
CACCACTTCAGATTTCTGTAAAACTTGCACTTTTTGTGATGTTTTTGCGA
ATTAAAACATCAACATATTCCCAGCATTTTTTGCGTTATACATCTATGAT
ACAACCATTGCAAAACTAGATGCCAATCCATACCCATTCCAGATAAAAAT
CAGTGGCCCTTATTGCTTTTGGTTTGAACCTAAAGATTTTCTTTAGCGAC
AACCATTATTTCTCAGGTGTTGGGCCGTTCGATCGAACTATCCACAACGG
AAAACGTTGGAGTGCTTCGCAAGCTTACCTGCACCCTGTTCTCGAGCGGA
AGAACCTTACCGCTCAAGACCGCGCGATGACATTGAAAGTCATTTTCGAA
GGTGACAAAGCAGTGGGTGTGGAATACATGCACAAAAATAAAATCAAACG
CGCAAAAGCAAATAAAGAAGTCATCCTATCAGGTACGTATCTCCTTCATT
ATGAAATTCCACTTCTAAACTAATTCTTTTCAAATGTTTCAAATGTTGTT
GCTTTTAATAATGGTCCAAGCCTCTACTTTACAGACAGCAGTTCGATTCA
GTGGATTAGTACATCAACCAAATATTCAGTGGTCAACTCGACCGCCATAT
TTAACATTTTTTTGAATTTCATCTCACAGGTGGCTCGATCAACACACCAC
AGTTGTTGATGTTGTCGGGTGTGGGTGACGAGAATGAGTTGAAAGAGCAT
GGAATCCCCCTCGTCCATCATCTGCCAGGCGTTGGGAAGAATCTCCAAGA
CCATCTTGAAGTCTACGTCCAGCAGGTAGATAGTTTGTTCTCTCAAGTGT
TTTAATTCGTGCTATTCAAGATGATAAGGATTTTTATTCATTTNACCGCC
ATATTTAACATTTTTTTGAATTTCATCTCACAGGTGGCTCGATCAACACA
CCACAGTTGTTGATGTTGTCGGGTGTGGGCGACGAGAATGAGTTGAAAGA
GCATGGAATCCCCCTCGTCCATCATCTGCCAGGCGTTGGGAAGAATCTCC
AAGACCATCTTGAAGTCTACGTCCAACAGGTAGATTGTTTGTTCTCTCAA
GTGTTTTAATTCGTGCTATTCAAGATGATAAGGATTTTTATTCATTTGTT
GCCTTCATTATCTTGGTCTCCAGGGTTTGTTGTTGTACTAGTGACGAATG
TTGCCGAAGTGTTGGTCTTTGTTGACGATGCTGCTGATCGGGAACATAAT
GTGTTATGTGATCTTTTTCTGCACTTCTCCAAACCTGAACCAAGACTGTT
CCATCCTCTTGGATTTGTTTTCTTCATATTCCTTTCGTTTCGTATTATCG
GATAAGGTGAACACACATCGAATACGTTTTCAACAATATGAAATGATGTT
CGATTAGACGTTTCTTCTTTTCTAAATGTGTGTCAAATTAAATTAAATTT
AGTTTATGAATTGTTCTATCGAGCAGTAGTGCTTTTTTGCTGTGGTTATT
TCAATAAGATTGCTGTTTTAATTAAAAAGGAAAATTTCATAATATCACAA
GTAAAGGAAGAAAGCGAAAATAACTGCGGGTACCTGATTCGAATCTCATT
TCAGGCGAATGATAATGTTTGGAAGGAAGTATTCATTTGCCAAAATGAAT
TTTTCTGTTTTTATTTCAGAGATGCACGCAACCAGTGACATTATACAAGC
AGACACGTTTATGGTACATGCCGTTCATTGGTTCACAATGGTTCATGACG
CGCACAGGTGATTGCGCTACCAACAGTTTGGAGACAGGTGGTTTCATCCG
AAGTAGAGAAGGTGTACCTCACCCTGACATCCAAATCCACTTTCTACCGT
TCGCCGTCAAAGATCACGGCCGTGTTTTCCCAGATGGTCATGCTTATCAG
GTAAGCACGACATCGTTTTCAAAGTTTACCATTTGATTGCTTGCATTTTG
CATTTAAAACCAAATTTCAAAACCCTTCACATTGCTGACAGTAAGCATTT
TTCTAAAACAGGTAAATTCGAAAAAACAGCACGATGAAAAGCCCAATTCC
AGCCTCGTTTGCAATTTTGTCCGGAATATACATTTTAAGACCCGGGTTTC
CATAATCAGCATAAAATTTCCGTTCCAACGGTGTATAACAACCCTATTCA
CCTTCTAGGTTAAGCAAAGATGTCTATAACTCGAGATAATGAAAAATGTT
ATTCTCTGCTTCTATGCAAACTTCTATGCTCATGACCTTCTTCTTGTTTT
GTTTCTTCAGTTCCATTCAGGTACGATGCGAGAGACGAGCGTTGGAACAT
TGAAATTGAAATCGAGTGACCCACGTGATCATCCAATTCTCGACCCAAAC
TACCTGGACACCCCTGATGACATTGTAGACCTGAGGAACGCTGTCAAATT
ATCACGTGAAATCATGTCTCAAAAAGCTTTCGATCCTTTCCGTGGCGATG
AAATGTTACCAGGTGAGTGTTGTTTTGGTGTGTAAATTGTTCGTGTTTTC
ACACTTTGATTCTAACAGCTTTGGATGGTAAGCTCGTGACCGTTTGTACT
TTTGAAATTTGCTTTTTCAGGGTCTCATGTTCAATCAGACGAAGAAATTG
ATGCTTTCATTCGCGAACATGGAGATTCTGCATATCATCCTTCATGCACT
TGCAAAATGGGAGCCTCTGATGACCCCTTGGCTGTCACTGATTCCCAGAC
TCGTGTGCACGGCCTTCAAAACCTACGGATCGTTGACGCATCTATCATGC
CATCCGTTGTCAGTGGCAACTTAAACGGCCCTGTCATCATGATGGCGGAA
AAAGCTGCGGATATCATCCGTGGTCGTGATCCGCTTCCCAAATCAACAGC
ACCCGTCTACGAAACTCCTGCTACTGGCCAACGATAATGTGATAGGTTTC
CTGCAAAAGATTTAGTATCTCCTTCGTAGCATGTGTGCAAGGAGCACTAT
CTTTCCAAAGATGGATACAACATTAAGAATTTAGACGGTCATCTTTTTAG
TTTTTTTTTTAAATTTAAATTAAATGAATTTTTTTAAGATTAAATTTTAA
TATATTAAATTGTTAATATTAAAATAATAATGGAGATTTTTAATTGATTA
CAATGAAAGAAAGAGAAAGTATATTTTTACAAAAAAATG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010344	XLOC_010344	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000300	supercontig	sc0000300:35860..41398 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.4247	30.7482	53.7124	48.4004	1.48086	3.30001	1.47708	0.835614	6.369	7.00376	4.35505	9.55756	11.5032	14.7537	13.6702	15.2199	0.239428	0.543654	0.740564	0.049337	4.80742	15.1874	26.0023	1.25754	0.034243	0.134783	9.22784	0.0888527	5.28151	11.6504

Blast

[Close]

BLAST of TCONS_00018465 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 729.939 bits (1883), Expect = 0.000e+0
Identity = 352/565 (62.30%), Postives = 423/565 (74.87%), Query Frame = 1

Query:  115 RNLSATSQFSSANQNFDSSHDYVIVGTGSAGCVLSNRLTEDGENTVLALEAGPKDPW-----WQWKIHMPAAMTYNLCNDNYNWYYHTAPQKGLNNRVLYWPRGRVWGGSSGLNAMVYVRGHAHDYDRWQSEGAEGWSYADCLPYFRKSQTHQEGGDDYRGGEGPLHVSRGTMSNPLHQAFLEAGQQAGYQYVDDLNGFQQEGVGPFDRTIHNGKRWSASQAYLHPVLERKNLTAQDRAMTLKVIFEGDKAVGVEYMHKNKIKRAKANKEVILSGGSINTPQLLMLSGVGDENELKEHGIPLVHHLPGVGKNLQDHLEVYVQQRCTQPVTLYKQTRLWYMPFIGSQWFMTRTGDCATNSLETGGFIRSREGVPHPDIQIHFLPFAVKDHGRVFPDGHAYQFHSGTMRETSVGTLKLKSSDPRDHPILDPNYLDTPDDIVDLRNAVKLSREIMSQKAFDPFRGDEMLPGSHVQSDEEIDAFIREHGDSAYHPSCTCKMGASDDPLAVTDSQTRVHGLQNLRIVDASIMPSVVSGNLNGPVIMMAEKAADIIRGRDPLPKSTAPVYE 1794
            ++L A +  S+ +++ D  + YV+VG GSAGCVL+ RLTED    VL LEAGPKD         WKIHMPAA+  NLC+D YNW YHT  Q+GL+ RVLYWPRGRVWGGSS LNAMVYVRGHA DY+RWQ +GA GW YA CLPYFRK+Q H+ G   YRG +GPL VSRG  ++PLH AFLEA QQAGY   +D+NGFQQEG G  D TIH GKRWSA+ AYLHP L R NL A+   +  +V+FEG +AVGVEY+   +  RA A+KEVILSGG+IN+PQLLMLSG+G+ ++LK+ GIP+V HLPGVG+NLQDHLE+Y+QQ CT+P+TL+   +      IG +W    TG+ AT  LETGGFIRS+ GVPHPDIQ HFLP  V DHGRV     AYQ H G MR TSVG LKL+S++P+DHP++ PNYL T  DI D R  VKL+REI +Q+A  PFRG E+ PGSH+QSD+EIDAF+R   DSAYHPSCTCKMG   DP AV D QTRV G++NLR+VDASIMPS+VSGNLN P IM+AEKAADII+G+  L     PVY+
Sbjct:   23 QSLGARALASAGSESRDE-YSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIKGQPALWDKDVPVYK 586

The following BLAST results are available for this feature:

BLAST of TCONS_00018465 vs. Swiss-Prot (Human)

BLAST of TCONS_00018465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CHDH	0.000e+0	62.30	Choline dehydrogenase, mitochondrial OS=Homo sapie...	[more]

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TCONS_00018465 (transcript) - C. hemisphaerica