|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018492 ID=TCONS_00018492|Name=TCONS_00018492|organism=Clytia hemisphaerica|type=transcript|length=2557bpRun BLAST on NCBI protein sequence of TCONS_00018492-protein >TCONS_00018492-protein ID=TCONS_00018492-protein|Name=TCONS_00018492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=561bp MXRKFLNSWREELWKSCKVGIPDGDSETLNTLIFGGLVAWFLGKFRHECDRun BLAST on NCBI transcript from alignment at sc0000301:88814..107458+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018492 ID=TCONS_00018492|Name=TCONS_00018492|organism=Clytia hemisphaerica|type=transcript|length=18645bp|location=Sequence derived from alignment at sc0000301:88814..107458+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000301:88814..107458+ >TCONS_00018492 ID=TCONS_00018492|Name=TCONS_00018492|organism=Clytia hemisphaerica|type=CDS|length=26976bp|location=Sequence derived from alignment at sc0000301:88814..107458+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018492 vs. Swiss-Prot (Human)
Match: GYS1 (Glycogen [starch] synthase, muscle OS=Homo sapiens GN=GYS1 PE=1 SV=2) HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0 Identity = 333/565 (58.94%), Postives = 418/565 (73.98%), Query Frame = 2
Query: 413 GNLVKLVFLMGRKF-LNSWREELWKSCKVGIPDGDSETLNTLIFGGLVAWFLGKFRHECDKEKLITAHFHEWMAGCGLVFCRTRHHDISTIFTTHATLLGRHLCAGSTDFYNNL-----DKEAGDRKIYHRYCLERAATSIAHIFTTVSQITADEAEHLLGRKPDIVTPNGLNIVKYTALHEFQNLHAKSKEKIHDFVRGHFYGNLDFDLDKTLYFFTAGRYEFQNKGADVYLESLARLNYLLKASNSDVTVVAFLIFPAKTNNYNVEALRGQAHVKQLRTTVNELHDIIGKRIFDSAMSGRLPDTEELLKQTDLTALKRCLLATQNGRMAPVVTHNMIDDHLDPILNCVRKMQLFNLKTDRVKVIFYPEFLSRTNPLFPMDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPNVSTNLSGFGRFMAEHIDYPEFYGIYVIDRRFKNAKESIEQLSDHMNDFCNLSRRQRIILRNRTERLSELLDWKNLGVYYKRARAMAIKQTHPEKAPRLSLRTNQLN----LRFPRPPSAPGSPALSRQVSDDEDEEDLEFRCAPDPEDA 2077
G LV L+ + + L W+ ELW +C +G+P D E + ++FG L WFLG+F + +++ + AHFHEW+AG GL CR R ++TIFTTHATLLGR+LCAG+ DFYNNL DKEAG+R+IYHRYC+ERAA AH+FTTVSQITA EA+HLL RKPDIVTPNGLN+ K++A+HEFQNLHA+SK +I +FVRGHFYG+LDF+LDKTLYFF AGRYEF NKGADV+LE+LARLNYLL+ + S+ TVVAF I PA+TNN+NVE L+GQA KQL T N + + G+++++S + G LPD ++L + D T +KR + ATQ PV THNM+DD DPIL +R++ LFN DRVKVIF+PEFLS T+PL P+DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMG+P++STNLSGFG FM EHI P YGIY++DRRF++ +S QL+ + FC SRRQRII RNRTERLS+LLDWK LG YY AR MA+ + PE + N+ + R+PRP S P SP+LSR S + E++ + R P ED
Sbjct: 111 GPLVVLLDVGASAWALERWKGELWDTCNIGVPWYDREANDAVLFGFLTTWFLGEFLAQSEEKPHVVAHFHEWLAGVGLCLCRARRLPVATIFTTHATLLGRYLCAGAVDFYNNLENFNVDKEAGERQIYHRYCMERAAAHCAHVFTTVSQITAIEAQHLLKRKPDIVTPNGLNVKKFSAMHEFQNLHAQSKARIQEFVRGHFYGHLDFNLDKTLYFFIAGRYEFSNKGADVFLEALARLNYLLRVNGSEQTVVAFFIMPARTNNFNVETLKGQAVRKQLWDTANTVKEKFGRKLYESLLVGSLPDMNKMLDKEDFTMMKRAIFATQRQSFPPVCTHNMLDDSSDPILTTIRRIGLFNSSADRVKVIFHPEFLSSTSPLLPVDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSISTNLSGFGCFMEEHIADPSAYGIYILDRRFRSLDDSCSQLTSFLYSFCQQSRRQRIIQRNRTERLSDLLDWKYLGRYYMSARHMALSKAFPE---HFTYEPNEADAAQGYRYPRPASVPPSPSLSRHSSPHQSEDEEDPRNGPLEEDG 672 HSP 2 Score: 120.168 bits (300), Expect = 8.440e-28 Identity = 63/138 (45.65%), Postives = 88/138 (63.77%), Query Frame = 1
Query: 49 KNMAQSHEPGSSDF--------GFVFEVAWEVVNKVGGIYTVIRTKAGVTAEELGGDYFLLGPYNHSQFQTXXXXXXXXXXXXKNVINSMRNDGIKVVYGRWLIDGNPKVILFDVDSGRNLLTSWREELWKSCKIGIP 438
+ ++ S PG D+ +FEVAWEV NKVGGIYTV++TKA VT +E G +YFL+GPY +T+VE++E +K ++SM + G KV +GRWLI+G P V+L DV + L W+ ELW +C IG+P
Sbjct: 5 RTLSMSSLPGLEDWEDEFDLENAVLFEVAWEVANKVGGIYTVLQTKAKVTGDEWGDNYFLVGPYTEQGVRTQVELLEAPTPALKRTLDSMNSKGCKVYFGRWLIEGGPLVVLLDVGASAWALERWKGELWDTCNIGVP 142 The following BLAST results are available for this feature:
BLAST of TCONS_00018492 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.