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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018496 ID=TCONS_00018496|Name=TCONS_00018496|organism=Clytia hemisphaerica|type=transcript|length=2433bpRun BLAST on NCBI protein sequence of TCONS_00018496-protein >TCONS_00018496-protein ID=TCONS_00018496-protein|Name=TCONS_00018496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=810bp VDKLSWHWRQEYVAYLNFHYWHRNGNITFQSWEQRSNHEIVVDGVAQTNTRun BLAST on NCBI transcript from alignment at sc0000301:128918..138919+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018496 ID=TCONS_00018496|Name=TCONS_00018496|organism=Clytia hemisphaerica|type=transcript|length=10002bp|location=Sequence derived from alignment at sc0000301:128918..138919+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000301:128918..138919+ >TCONS_00018496 ID=TCONS_00018496|Name=TCONS_00018496|organism=Clytia hemisphaerica|type=CDS|length=29160bp|location=Sequence derived from alignment at sc0000301:128918..138919+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018496 vs. Swiss-Prot (Human)
Match: SDK2 (Protein sidekick-2 OS=Homo sapiens GN=SDK2 PE=1 SV=3) HSP 1 Score: 140.584 bits (353), Expect = 8.301e-34 Identity = 152/626 (24.28%), Postives = 267/626 (42.65%), Query Frame = 2
Query: 623 LNTAALTSTSIRVNVGPILQ-NQNGYIVSYSLYYAKVDTDGSTVIGDWTLKTSATPQIDVVGLEFWTHYAFKAGGATAIGAGPNTTTLQIERTLEDLPTGGPLNIIGKNLTETSXXXXXXXXXXXXRNGIILGYKIHYKNLRTNAVNE---IEVGTHRVANISGLDWFQEYEVKMSGKTSVGYGVWSNPLITISTDEWIPQLPPLNVRSGNITGTTIQLLFDNIADPFSNFGYPIASKINVTAVSNIFQQQEIQYGGPNSA--IITGLNEYTNYSLSVAVGTRRGFLVFAQSILVRTDFGPPSLPPDNIFAQKINSTALRFRFELIPPDDRNGLITKYLVNIRQLNVDTSWTTYEVLENGAVKSLDIGGLEKWRDYEYTVAGCTIV--CGVESAIAIIRTDQDLPEMPPANRTAGPETSTSIKVQWDVVPEGFRRGIITAYHVMYKDDTIE-------------PPDWKETS-------ITAPT-QEVVLSTLKFFTSYSFKIAAETVKGRGNHSIEFSTKTLEDVPEVFPSNLTCINGSSSTIDCGWDQMLQVHGQVNGIIAGYRIYYNVLDCSKAELADCNENTTFVDEVTVPDLLHTISNLKNYTEYEIQIELFNSLATGPKS 2413
L TA+ TS +R P ++ N N V Y + Y++ D G T+ ++ + LE WT Y + AIG+GP + T+ + RT E +P+ GP N+ T +S+ + W E+ EADRNG++LGYK+ YK ++ +E + R A ++GL + YEV++ T +G G S+P I T + +P PP+ + + T+++L++ A P G +A +I + ++ P++ TGL + Y + TR+G+ A++++V T+ PP Q+ + A P D + Y + R+L W + + S + L+ + Y++ V + + T Q P+ P + P T+TS+ ++W E GI+ + + Y++ E W E + ++ P+ + L L Y +++ G G S E VP P N+ +++ +D W+ + Q NG I GY+IY+ + + L + T F+ E +V + NL YT Y + + FN+ GP+S
Sbjct: 1105 LRTASETSLWLRWMPLPEMEYNGNPESVGYKIKYSRSDGHGKTL--SHVVQDRVERDYTIEDLEEWTEYRVQVQAFNAIGSGPWSQTV-VGRTRESVPSSGPTNVSALATTSSSMLVRWSEVPEADRNGLVLGYKVMYKEKDSDTQPRFWLVEGNSSRSAQLTGLGKYVLYEVQVLAFTRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPPAAP---NGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRDRPQPPSRPMVQQEDVRARSVLLSWEPGSDGLSPVRYYTIQTRELP-SGRWALHSASVSHNASSFIVDRLKPFTSYKFRVKATNDIGDSEFSEESESLTTLQAAPDEAPTILSVTPHTTTSVLIRWQPPAEDKINGILLGFRIRYRELLYEGLRGFTLRGINNPGATWAELTSMYSMRNLSRPSLTQYELDNLNKHRRYEIRMSVYNAVGEGPSSPPQEVFVGEAVPTAAPRNVVVHGATATQLDVTWEPP-PLDSQ-NGDIQGYKIYF--WEAQRGNLTE-RVKTLFLAENSV-----KLKNLTGYTAYMVSVAAFNAAGDGPRS 1712 HSP 2 Score: 103.99 bits (258), Expect = 1.810e-22 Identity = 168/701 (23.97%), Postives = 291/701 (41.51%), Query Frame = 2
Query: 443 LPSTTVEIASNGEKTQVFSGLNIWSIYWAYTIFEGSGFITRSKKVEQRTDESYPFDPPSYLNTAALTSTSIRVNVGP---ILQNQNGY----IVSYSLYYAKVDTDGSTVIGDWTLKTSATPQIDVVGLEF-----WTHYAFKAGGATAIGAGPNTTTLQIERTLEDLPTGGPLNIIGKNLTETSXXXXXXXXXXXXRNG--IILGYKIHYKNLRTNAVNEIEVGTHRVAN---ISGLDWFQEYEVKMSGKTSVGYGVWSNPLITISTDEWIPQLPPLNVRSGNITGTTIQLLFDNIADPFSN---FGYPIASKINVTAVSNIFQQQEIQYGGPNSAIITGLNEYTNYSLSVAVGTRRGFLVFAQS-ILVRTDFGPPSLPPDNIFAQKINSTALRFRFELIPPDDRNGLITKYLVNIRQLNVDTSWTTYEVLENGAVKSLDIGGLEKWRDYEYTVAGCTIVCGVESAIAIIRT--DQDLPEMPPANRTAGPE--TSTSIKVQWDVVPEGFRRGIITAYHVMYKDDTIEPPDWKETSITAPTQEVVLSTLKFFTSYSFKIAAETVKGRGNHSIEFST-KTLEDVPEVFPSNLTCINGSSSTIDCGWDQMLQVHGQVNGIIAGYRIYYNVL----------------DCSKAELADCNENTTFVDEVTVPDLL-HTISNLKNYTEYEIQIELFNSLATGPKSP 2416
LP+ T+E G + L ++I A +G G ++ S + P PP+ L + N+GP LQ + GY +S L A+V G +W L + + D +E +T Y+F+ +G P + + +TL+ P P N+ + +ETS+ + W + E + NG +GYKI Y + V RV I L+ + EY V++ ++G G WS ++ T E +P P NV + T +++ + + + + N GY + K + F ++ SA +TGL +Y Y + V TR G + IL RT P PP I ++ +T++R ++ PP NG+I Y + R + T EVL A + GL+ Y + + T E+A A++ T +D P+ PP+ E + S+ + W+ +G + Y + ++ S++ ++ LK FTSY F++ A G S E + TL+ P+ P+ L+ +++++ W ++NGI+ G+RI Y L + AEL + ++ P L + + NL + YEI++ ++N++ GP SP
Sbjct: 946 LPNVTLEYRVTG-----LTALTTYTIEVAAMTSKGQGQVSAST-ISSGVPPELP-GPPTNLGIS---------NIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEG--EEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQAPPDMAPANVSLRTASETSLWLRWMPLPEMEYNGNPESVGYKIKYSRSDGHGKTLSHVVQDRVERDYTIEDLEEWTEYRVQVQAFNAIGSGPWSQTVVG-RTRESVPSSGPTNVSALATTSSSMLVRWSEVPEADRNGLVLGYKVMYKEKDSDTQPRFWL--VEGNSSRSAQLTGLGKYVLYEVQVLAFTRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQ--PPAAPNGIILAYQITHRLNTTTANTATVEVLAPSA-RQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRDRPQ-PPSRPMVQQEDVRARSVLLSWEPGSDGL--SPVRYYTIQTRELPSGRWALHSASVSHNASSFIVDRLKPFTSYKFRVKATNDIGDSEFSEESESLTTLQAAPDEAPTILSVTPHTTTSVLIRWQP--PAEDKINGILLGFRIRYRELLYEGLRGFTLRGINNPGATWAELTSMYS----MRNLSRPSLTQYELDNLNKHRRYEIRMSVYNAVGEGPSSP 1612 HSP 3 Score: 97.8265 bits (242), Expect = 1.360e-20 Identity = 148/592 (25.00%), Postives = 253/592 (42.74%), Query Frame = 2
Query: 761 WT-LKTSATPQ---IDVVGLEFWTHYAFKAGGATAIGAGPNTTTLQIERTLEDLPTGGPLNIIGKNLTETSXXXXXXXXXXXXRNGIILGYKIHY-----------KNLRTNAVNEIEVGTHRVANISGLDWFQEYEVKMSGKTSVGYGVWSNPLITISTDEWIPQLPPLNVRSGNITGTTIQLLFDNIADPFSNF---GYPIAS--------KINVTAVSNIFQQQEIQYGGPNSAIITGLNEYTNYSLSVAVGTRRGFLVFAQSILVRTDFGPPSLPPDNIFAQKINSTALRFRFELIPPDDRNGLITKYLVNIRQLNVDTSWTTYEVLENGAVKSLDIGGLEKWRDYEYTVAGCTIVCGVESAIAIIRTDQDLPEMPPANRTAGPETSTSIK-VQWDVVPEGFRRGI-----ITAYHVMYKDDTI-EPPDW---KETSITAPTQEVVLSTLKFFTSYSFKIAAETVKGRGNHS-IEFSTKTLEDVPEVFPSNLTCINGSSSTIDCGWDQMLQVHGQVNGIIAGYRIYYNVLDCSKAELADCNENTTFVDEVTVPDLLHTISNLKNYTEYEIQIELFNSLATGPKSPKII 2425
WT L S P+ + V GL Y F+ +G G + + E+ PT P N+I T SI I W E+ +NGI+ GY I Y KN+ VN + + L + YE++++ S G GV+S+ +T T + +P +PP NV + TTI+ ++ + F N GY + + VTA N Q I G ++GL ++T Y SV T G + LVRT P P ++ +I T+L+ ++ P ++NG++T Y ++ + N + T+ L N ++ + GL Y VA T + + + I + PE+P GP T+ I + V FR G I+ + V + + E +W + S + + + L FT YSF++ + G S +TL+ P++ P+N++ S +++ W + ++ N GY+I Y+ D L+ ++ D +TI +L+ +TEY +Q++ FN++ +GP S ++
Sbjct: 636 WTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPEEPPTAPPQNVIASGRTNQSIMIQWQPPPESHQNGILKGYIIRYCLAGLPVGYQFKNITDADVNNLL--------LEDLIIWTNYEIEVAAYNSAGLGVYSS-KVTEWTLQGVPTVPPGNVHAEATNSTTIRFTWNAPSPQFINGINQGYKLIAWEPEQEEEVTMVTARPNF--QDSIHVG-----FVSGLKKFTEYFTSVLCFTTPGDGPRSTPQLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQ--EPGEKNGILTGYRISWEEYNRTNTRVTH-YLPNVTLE-YRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVP-PELP------GPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQAPPDMAPANVSLRTASETSLWLRWMPLPEMEYNGNPESVGYKIKYSRSDGHGKTLSHVVQDRVERD--------YTIEDLEEWTEYRVQVQAFNAIGSGPWSQTVV 1191 HSP 4 Score: 96.2857 bits (238), Expect = 4.567e-20 Identity = 140/626 (22.36%), Postives = 256/626 (40.89%), Query Frame = 2
Query: 479 EKTQVFSGLNIWSIYWAYT-IFEGSGFITRSKKVEQRTDESYPFDPPSYLNTAALTSTSIRVNVGPILQ-NQNGYIVSYSLYYAKVDTDGSTVIGDWTLKTSATPQIDVVGLEFWTHYAFKAGGATAIGAGPNTTTLQIERTLEDLPTGGPLNIIGKNLTETSXXXXXXXXXXXXRNGIILGYKIHYK---NLRTNAVNEIEVGTHRVANISGLDWFQEYEVKMSGKTSVGYGVWSNPLITISTDEWIPQLP--PLNVRSGNITGTTIQLLFDNIADPFSNFGYPIASKINVTAVSNIFQQQEIQYGGPNSAIITGLNEYTNYSLSVAVGTRRGFLVFAQSILVRTDF-GPPSLPPDNIFAQKINSTALRFRFELIPPDDRNGLITKYLVNIRQL--------------NVDTSW---TTYEVLENGAVKSL---DIGGLEKWRDYEYTVAGCTIVC-GVESAIAIIRTDQDLPEMPPANRTAGPETSTSIKVQWDVVPEGFRRGIITAYHVMYKDDTIEPPDWKETSITAPTQEVVLSTLKFFTSYSFKIAAETVKGRGNHSIEFSTKTLEDVPEVFPSNLTCINGSSSTIDCGWDQMLQVHGQVNGIIAGYRIYYNVLDCSKAE 2269
E+ L W+ Y F G S+ V RT ES P P+ ++ A TS+S+ V + + ++NG ++ Y + Y + D+D W ++ +++ + GL + Y + T IG G + +ERTL+D+P G P+ I+ + TS+ +IW A NGIIL Y+I ++ A E+ + R +GL Y +++ +T G+G + L+ + PQ P P+ V+ ++ ++ L ++ +D S Y + + + + +S I+ L +T+Y V G F++ T P P + +T++ R++ D NG++ + + R+L N +W T+ + N + SL ++ L K R YE ++ V G S + + +P P N T+T + V W+ P + G I Y + + + + ++ V L L +T+Y +AA G G S +T + P PS++ ++++++ W+ NGI+ GYR+ Y CS +
Sbjct: 1157 ERDYTIEDLEEWTEYRVQVQAFNAIGSGPWSQTVVGRTRESVPSSGPTNVSALATTSSSMLVRWSEVPEADRNGLVLGYKVMYKEKDSDTQPRF--WLVEGNSSRSAQLTGLGKYVLYEVQVLAFTRIGDGSPSHPPILERTLDDVP-GPPMGILFPEVRTTSVRLIWQPPAAP--NGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRDRPQPPSRPM-VQQEDVRARSVLLSWEPGSDGLSPVRYYTIQTRELPSGRWALHSASVSHNA-SSFIVDRLKPFTSYKFRVKATNDIGDSEFSEESESLTTLQAAPDEAPTILSVTPHTTTSVLIRWQPPAEDKINGILLGFRIRYRELLYEGLRGFTLRGINNPGATWAELTSMYSMRNLSRPSLTQYELDNLNKHRRYEIRMSVYNAVGEGPSSPPQEVFVGEAVPTAAPRNVVVHGATATQLDVTWEPPPLDSQNGDIQGYKIYFWEAQRGNLTERVKTLFLAENSVKLKNLTGYTAYMVSVAAFNAAGDGPRSTPTQGQTQQAAPSA-PSSVKFSELTTTSVNVSWE----APQFPNGILEGYRLVYE--PCSPVD 1768 The following BLAST results are available for this feature:
BLAST of TCONS_00018496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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