|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018499 ID=TCONS_00018499|Name=TCONS_00018499|organism=Clytia hemisphaerica|type=transcript|length=928bp
CAGTGGAATTGATTGAAGTTTTACGTAGCAAACGTGTCGATAGAATGGCC
GTTGATGCAATTTATGCTGCCTATCATTCCGAAAAGATGTCTGATCCTGA
CGTCATCTTCAGAGGTATCAAAGAATCAGGCGCTACTCAAGGCATTGTCT
TCGGTGGCAGAGCTTTGAGATTGGAGAAATGTTTTAGGAAATATTTTCAT
GATAAAAAAGTGGAATTAATTGAACGAATAAAAACTATCATCGATGCGGA
CAAACGGAATTATGCGGACAGCGAATTGTTGGACAAACGAAATGCGATGA
TAAAATATGAATCAGATATTTGGATGTTTCTCATCAAAGTGTTGGGTGGA
GTTTTCCTGGGTGCTTTTATCATTGGATGTATATTCCAATGTCAATATTA
TCGTCATAATAAAGTATATGcataTGTGATCACACACAAGACATGCGACC
ATTTCTACGAAAAAGAAGCTCGCCAAATGCTGAAAAAATTcgaagaacat
tttgaaaagaagaTTAATAAAATTGAAGTCAAGCACGCTTTTGAGCGTGA
ATACCTCATCAAAAATATGAGGAAATACGTCGAATGGCTAACTCCTGATC
AAGTCAATAAGTATAAATTCTAAAACCATGTAATTTTAATTCTTAATATC
TTGAAGTCTATNATATAAATTCTAAAACTATAACAATTTAATGTTTGATA
CGTTAACGTGTTTGATATTACTTTCAACATAATctaaaatttatatttcc
tTTAAggtgagaccaatttgattagttgttttacgggcccgaccgaccct
gaagttccaaaaatcgaaataaaaataaaattcattttggtagtactccc
aaattttcaaaattttatagtttttcaaaggttttgagaattttatactc
agattttcattttatccatgaactCGAC Run BLAST on NCBI protein sequence of TCONS_00018499-protein >TCONS_00018499-protein ID=TCONS_00018499-protein|Name=TCONS_00018499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
VELIEVLRSKRVDRMAVDAIYAAYHSEKMSDPDVIFRGIKESGATQGIVF
GGRALRLEKCFRKYFHDKKVELIERIKTIIDADKRNYADSELLDKRNAMI
KYESDIWMFLIKVLGGVFLGAFIIGCIFQCQYYRHNKVYAYVITHKTCDH
FYEKEARQMLKKFEEHFEKKINKIEVKHAFEREYLIKNMRKYVEWLTPDQ
VNKYKF Run BLAST on NCBI transcript from alignment at sc0000301:152541..155759+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018499 ID=TCONS_00018499|Name=TCONS_00018499|organism=Clytia hemisphaerica|type=transcript|length=3219bp|location=Sequence derived from alignment at sc0000301:152541..155759+ (Clytia hemisphaerica)
CAGTGGAATTGATTGAAGTTTTACGTAGCAAACGTGTCGATAGAATGGCC
GTTGATGCAATTTATGCTGCCTATCATTCCGAAAAGATGTCTGATCCTGA
CGTCATCTTCAGAGGTATCAAAGAATCAGGCGCTACTCAAGGCATTGTCT
TCGGTGGCAGAGCTTTGAGATTGGAGAAATGTTTTAGGAAATATTTTCAT
GATAAAAAAGTGGAATTAATTGAACGAATAAAAACTATCATCGATGCGGA
CAAACGGGTAACACTTTTTTAATCTCAATAAAAGAATTCTCTTTATTAAT
AAGCCCTGGCACATGGCAGTTTTTTTCGATCAGGAATAATTGGTTGAAAT
ATTTTATCTATCTTATTACTTTGAGAAATTGGAACAGCTTGAGTTATTCG
TAGACTTTCATTGACTTTGGCTACCGAGAAAGCCGAGAAAGCCCGTGATC
AGGTAAATAATTCTCATTTCACAATTTATCTCGCTTCAGAATTATGCGGA
CAGCGAATTGTTGGACAAACGAAATGCGATGATAAAATATGAATCAGATA
TTTGGATGTTTCTCATCAAAGTGTTGGGTGGAGTTTTCCTGGGTGCTTTT
ATCATTGGATGTATATTCCAATGTCAATATTATCGTCATAATAAAGTATA
TGGtaagcactttttcaaaatcttttgtctTTCCATTGATAATTTTATgt
taaatttgatcaaattattaattttttttgcttgacagAAAACTACATTT
GCCAATTGTTCTTTATAATATGGAACAGGAAAACTTTATATAACGTCCTT
TCAAACACCTTCGTGAATAGAAAGTAATAAAGGCTACAAAGTTAAAGAGA
CTTGTCCTTATAAACAACAACATTTTCATCTAATAGGATCAGATAACTTG
TTTACCTTAAaggctttgtttttaaataagtgtgatatcgtttgcttact
cgtcaatttttaattcacaagctttttggacctacctggaggtcctataa
attaacctttgtccgttcgttcgttcgttcgtccgtccgtccgtctgtta
ccagcttttttcGAGATTGGCCCATTagttttttcggatttttggcACAA
CGATGCAacatggtaatgcccaaaacatggccgagcccgattttcgaaaa
aaaatcatttccggccgaaaatgccggaaataagccgaaaatcgccgttt
ttgcagattttcatcggactttttccttatatttcgttgtttttttcaca
caaaaacattattaatagcaatgtccacgatcNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNgtactttttatttttttatgaaattttgcacactgat
gcaaaatgacaatacctaaaatgtgacggagcccgattttcgaaaaacat
tttttctggccgaaaatgccggaaataatGGCCGTTTTTCTGggttttca
ttggatttttccttataattgattgtttttcattcaaaaacattattgat
agcaatgtaGCAATGcccccaccatcaagcatgattcaattgtcaataaa
actgatttttgcgaccagaactttctatttattttttcccttcaaccctt
ccctctcccccatcaacaatcaatgatgaatttattgcgttatgcatttt
cgctaaatgctctattttctgactgatttttttcatttttctcctcgcat
tgctatctaactttcatcatcaagtaggtccattcagcatccaGCTTGTT
AACATTGGATtggcacggatgtggagcaagattgctcagaaagaggaaaa
gaaaaacatttttttgtataacagcataatataacaatagaaagacactg
tcctgatatgaaatatgtgtctgatacgaaacggaaacacttatgtaaaa
agaaaaccttttaaGGAAGGATTTTGGTGGATacggcgagaccaatttaa
tttgttgttctacgggcccgtccgaccctatttttgctaaaatcaaaaaa
acaataatattgaatttctgctacaatatattttacacactagttatttg
taagaatcaaatttgaataaagctgaaaattgattcaagaaattaaaaat
ttttgaaaatcaagcaTTAAGATACATACCTACACTAAGATTTTatcatg
atcttcatcgaagataaaaaaaaagtaaatttttgaaccagatatttttt
ggaaatcattTTCGGTACTTTAACAACCCTGATAAACCCATATTTTGcca
acgatctgcccgtagaacgacaaattaaattggtctcgcctatgtggaaa
aaatatataaacaaaatatatggaattattatccgacgcgcgtaaataat
gacatttgattggcttctttactgtccaatatttttgaaCAGGGGGTCGG
TAAAATTATTAAATATGGCAGGAatttgattctggtgaatggcgctaaaa
aaacttaatttatGATTCCGGTCAAATTTACCAGACTTTCTGTCCGCCAA
TATTTCTTCACTTAAGGTATTTGAGTTATACAGGAGATTCTAGTGACTTT
CGtggattttgaaattcttttttcgcCCCCTTACGGAGAACTtacatatt
ttatttttcagcataTGTGATCACACACAAGACATGCGACCATTTCTACG
AAAAAGAAGCTCGCCAAATGCTGAAAAAATTcgaagaacattttgaaaag
aagaTTAATAAAATTGAAGTCAAGCACGCTTTTGAGCGTGAATACCTCAT
CAAAAATATGAGGAAATACGTCGAATGGCTAACTCCTGATCAAGTCAATA
AGTATAAATTCTAAAACCATGTAATTTTAATTCTTAATATCTTGAAGTCT
ATNATATAAATTCTAAAACTATAACAATTTAATGTTTGATACGTTAACGT
GTTTGATATTACTTTCAACATAATctaaaatttatatttcctTTAAggtg
agaccaatttgattagttgttttacgggcccgaccgaccctgaagttcca
aaaatcgaaataaaaataaaattcattttggtagtactcccaaattttca
aaattttatagtttttcaaaggttttgagaattttatactcagattttca
ttttatccatgaactCGAC Coding sequence (CDS) from alignment at sc0000301:152541..155759+ >TCONS_00018499 ID=TCONS_00018499|Name=TCONS_00018499|organism=Clytia hemisphaerica|type=CDS|length=1863bp|location=Sequence derived from alignment at sc0000301:152541..155759+ (Clytia hemisphaerica)
GTGGAATTGATTGAAGTTTTACGTAGCAAACGTGTCGATAGAATGGCCGT
TGATGCAATTTATGCTGCCTATCATTCCGAAAAGATGTCTGATCCTGACG
TCATCTTCAGAGGTATCAAAGAATCAGGCGCTACTCAAGGCATTGTCTTC
GGTGGCAGAGCTTTGAGATTGGAGAAATGTTTTAGGAAATATTTTCATGA
TAAAAAAGTGGAATTAATTGAACGAATAAAAACTATCATCGATGCGGACA
AACGGAATTATGCGGACAGCGAATTGTTGGACAAACGAAATGCGATGATA
AAATATGAATCAGATATTTGGATGTTTCTCATCAAAGTGTTGGGTGGAGT
TTTCCTGGGTGCTTTTATCATTGGATGTATATTCCAATGTCAATATTATC
GTCATAATAAAGTATATGcataTGTGATCACACACAAGACATGCGACCAT
TTCTACGAAAAAGAAGCTCGCCAAATGCTGAAAAAATTcgaagaacattt
tgaaaagaagaTTAATAAAATTGAAGTCAAGCACGCTTTTGAGCGTGAAT
ACCTCATCAAAAATATGAGGAAATACGTCGAATGGCTAACTCCTGATCAA
GTCAATAAGTATAAATTCTAAGTGGAATTGATTGAAGTTTTACGTAGCAA
ACGTGTCGATAGAATGGCCGTTGATGCAATTTATGCTGCCTATCATTCCG
AAAAGATGTCTGATCCTGACGTCATCTTCAGAGGTATCAAAGAATCAGGC
GCTACTCAAGGCATTGTCTTCGGTGGCAGAGCTTTGAGATTGGAGAAATG
TTTTAGGAAATATTTTCATGATAAAAAAGTGGAATTAATTGAACGAATAA
AAACTATCATCGATGCGGACAAACGGAATTATGCGGACAGCGAATTGTTG
GACAAACGAAATGCGATGATAAAATATGAATCAGATATTTGGATGTTTCT
CATCAAAGTGTTGGGTGGAGTTTTCCTGGGTGCTTTTATCATTGGATGTA
TATTCCAATGTCAATATTATCGTCATAATAAAGTATATGcataTGTGATC
ACACACAAGACATGCGACCATTTCTACGAAAAAGAAGCTCGCCAAATGCT
GAAAAAATTcgaagaacattttgaaaagaagaTTAATAAAATTGAAGTCA
AGCACGCTTTTGAGCGTGAATACCTCATCAAAAATATGAGGAAATACGTC
GAATGGCTAACTCCTGATCAAGTCAATAAGTATAAATTCTAAGTGGAATT
GATTGAAGTTTTACGTAGCAAACGTGTCGATAGAATGGCCGTTGATGCAA
TTTATGCTGCCTATCATTCCGAAAAGATGTCTGATCCTGACGTCATCTTC
AGAGGTATCAAAGAATCAGGCGCTACTCAAGGCATTGTCTTCGGTGGCAG
AGCTTTGAGATTGGAGAAATGTTTTAGGAAATATTTTCATGATAAAAAAG
TGGAATTAATTGAACGAATAAAAACTATCATCGATGCGGACAAACGGAAT
TATGCGGACAGCGAATTGTTGGACAAACGAAATGCGATGATAAAATATGA
ATCAGATATTTGGATGTTTCTCATCAAAGTGTTGGGTGGAGTTTTCCTGG
GTGCTTTTATCATTGGATGTATATTCCAATGTCAATATTATCGTCATAAT
AAAGTATATGcataTGTGATCACACACAAGACATGCGACCATTTCTACGA
AAAAGAAGCTCGCCAAATGCTGAAAAAATTcgaagaacattttgaaaaga
agaTTAATAAAATTGAAGTCAAGCACGCTTTTGAGCGTGAATACCTCATC
AAAAATATGAGGAAATACGTCGAATGGCTAACTCCTGATCAAGTCAATAA
GTATAAATTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018499-exon-sc0000301-1491911889:152541..152797 | TCONS_00018499-exon-sc0000301-1491911889:152541..152797 | Clytia hemisphaerica | exon |
| TCONS_00018499-exon-sc0000301-1510915933:152541..152797 | TCONS_00018499-exon-sc0000301-1510915933:152541..152797 | Clytia hemisphaerica | exon |
| TCONS_00018499-exon-sc0000301-1575043694:152541..152797 | TCONS_00018499-exon-sc0000301-1575043694:152541..152797 | Clytia hemisphaerica | exon |
| TCONS_00018499-exon-sc0000301-1491911889:153030..153192 | TCONS_00018499-exon-sc0000301-1491911889:153030..153192 | Clytia hemisphaerica | exon |
| TCONS_00018499-exon-sc0000301-1510915933:153030..153192 | TCONS_00018499-exon-sc0000301-1510915933:153030..153192 | Clytia hemisphaerica | exon |
| TCONS_00018499-exon-sc0000301-1575043694:153030..153192 | TCONS_00018499-exon-sc0000301-1575043694:153030..153192 | Clytia hemisphaerica | exon |
| TCONS_00018499-exon-sc0000301-1491911889:155252..155759 | TCONS_00018499-exon-sc0000301-1491911889:155252..155759 | Clytia hemisphaerica | exon |
| TCONS_00018499-exon-sc0000301-1510915933:155252..155759 | TCONS_00018499-exon-sc0000301-1510915933:155252..155759 | Clytia hemisphaerica | exon |
| TCONS_00018499-exon-sc0000301-1575043694:155252..155759 | TCONS_00018499-exon-sc0000301-1575043694:155252..155759 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000301 | supercontig | sc0000301:152541..155759 + |
Blast
The following BLAST results are available for this feature:
|
