TCONS_00018563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018563
Unique NameTCONS_00018563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1946

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018563 ID=TCONS_00018563|Name=TCONS_00018563|organism=Clytia hemisphaerica|type=transcript|length=1946bp
ATTTGAATGATGTTGGTCCTGTAGACGGTTTGGTAGGCTAGATCGTGAAG
GCTTTTCTCAGTTTTCTGTGGAGAGGAGAAAATGCATCACCATCGATCTC
TCAACAACCTGATGATGCAACCTAAACCCGGTCAACCACCTTGGTCACCG
GTTGTCCCCTACAAAAATCAACTGACGTTGCCATCCAAAGAACGACTAAG
TGCTAGTACGCAAGACTTACGAAATGGTAACATGTTAAAATACTATGATG
GATATCCTCAAGAGAACCACAAGAATCATAATtacattgaaacaaatgaa
TCACTTATTAAAGAAGAAGATTTGATTCGGATCAACGTCTGTGGAATGAT
TTATGAGACTTTGCGAAGCACCCTCCAAAGATTCCCAGATACGTTACTTG
GTGACAAAAGTCGATTGGATTTGTACTATGTTAAATCAAgagatttttat
tattttgataagAACAGACAAGCTTTTGAAGCCATTCTGTATTATTACCA
AACAGGTGGCATTTTGATTCGGCCGCCCAACATTCCCATGCCGTTGTTCG
CAGAGGAGGTGGCCTTCTTTGACCTTGGTGAAAGTGTCTTTATGCAGTTA
CAAAAAGAGGAAGGTTACATATCTGACCAAGAACGCGTCTTACCGACGAA
CGAGCTTCAACGGAAAGTGTGGGAGTTGTTCGAATTCCCTGATTCTAGTC
AAGCAGCACGCATCCTTGCAACATGGTCCGTTCTCGTTATCATCTTATCC
ATCACTGTTTTTTGTTTGGAAACTTTGCCACAATACTCAGTGAACAACAA
CAAGCCTCTGACGACTGCTGCACCTTCAGGGAATGTTACAAACGGTACGC
TCTCTGCAACTCCGAGTAAAAGTGAAGGTGAAATGTACCGTCAACCATGG
TTTTCCTTTGAATTAGGCTGCATCATTTGGTTTTCCTTTGAATATCTGGT
GCGCCTTCTCTCATCCCCATCCAAATGGCAATTTGCCAAATCCTTTCTTA
ACACCATCGATTTATTGGCCATCCTTCCTTATTTCATCACCCTATCCATC
AATTCGGAGAACACCACACCGCTATCCGTTCTTCGGGTGGTCCGGTTGGT
TCGTGTCTTCCGTATCTTCAAATTGTCCAGACATTCACTTGGCTTGCGTA
TCTTGGGACACACATTACGAGCGAGTATCAGTGAATTGGGCATGTTGATA
TTCTTTCTGTGTCTTGGTGTCATTCTGTTTTCCAGTGCCATATTCTATGC
GGAACAAGGAATGAATGATCAATTCCAAAGCATTCCCGATGCGTTTTGGT
ACAGTCTAGTCACCATGACAACCGTTGGATACGGAGACAAAGTTCCCAAA
ACATTACCTGGGAAATTTGTTGGAAGTCTTTGTGCGATCGTTGGCGTGTT
GACAATTGCATTGCCAGTACCGGTTATTGTGTccaattttgagttttttt
acaAGCGTGATCGGATGACGTTCGAAAGGAGCAAGTATAACACACCGTCG
GAGAATCAATCCAAACGACAATCACCTGATCAATCGCCTCAAAGCAATCA
TAAAGAGAACAACATCAATCATAATCACAACGAAGATCCTCTCTTGACAA
CTACTGTTATGTAAACTTGTTATCACGAGAGAGCTCCCGCTACATGGTGA
TTCATGAGTTTTTGTGGCTGCGTAAATAAGAGGAGGTAAACCATATGGTG
ATTGGGTTACCTAAATCCGTTCGGTATAGAAAGAACACTTTCACTGAAAT
AGAGatcattaaaattgatgatttaGACAGATGCTGATCGCCAAGTTTTA
ActtttaattgtttttcttaATGAAAGTCAATGCTGTTAGGTCTTAGCGA
ATCTTCACTGCAAGTGGTGTCTTTCGATTCCTTGTAATAACAGGAGAAAA
GTCTTTAACAAGCAAGTGTTTGAAAACTTAATGTTGTCATCTTCNN
Run BLAST on NCBI

transcript from alignment at sc0000301:344099..350921+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018563 ID=TCONS_00018563|Name=TCONS_00018563|organism=Clytia hemisphaerica|type=transcript|length=6823bp|location=Sequence derived from alignment at sc0000301:344099..350921+ (Clytia hemisphaerica)
ATTTGAATGATGTTGGTCCTGTAGACGGTTTGGTAGGCTAGATCGTGAAG GCTTTTCTCAGTTTTCTGTGGAGAGGAGAAAATGCATCACCATCGATCTC TCAACAACCTGATGATGCAACCTAAACCCGGTAATAACCTTCTTTTCAAA CCAATTCTCAAAATCGTCTTTCTTATAATTGGCTTTGCCTTACACTCTTC TTTTTGAATCTCCCAATCACGATTCAGCAATTCTTTTCTGATCTAATTCA GACTCCATACCACAAATAAAAGAAgagcaatatattttttaacatATTAA CCCCTGTCTCCCTGGTCCGATGAGAATAATTTGCCACCAGTATGAAATCA ATGAGCAAACACGTGCAAAAACCAATTGGGGATGTTTTCTCTTCACCATT AGggtgtaatttttaaaaagtgtagCTTTTCAATCATGAAATCTCGAGTT GCTTTTTCACCGCAACGATTATTTGGGCGACTTTATTTTTCCAGCGGGTA CAGATGTCGGTCAGTGCCTTTGATACAGGGGTGGATATGTaattaaaact gtttttattgATATAATTATATAAAGTTAATAATAGCGATGGCTTTTTTC AACGTCGTGAGTCATGTTTTGATGTcgaaaagaagagagaaaaaaagcGA CGAAGAGACGAATGGTAAGAGAAGTTCAACACTTGTCCGAGTTCAATATT TTACGGTATTGCCCGAAGAAACAGTttatgactttttaaagtagattctt ttgtgtttaatAACACTCAATAATAACACCCATAAATATATCTATTTCGT TTATTCTAACACCATTGGTATTCCATGAGCCCGGAACTTTTTATTGGACT GACCTTCGATGACCTTCTCTAAAATATAAGTTTAATATTCGTTTAATTTT TTACAGTTTACACGGGTAGCCAACTCGGTTATAATGCGGACCAAATGGGA ACATTGCAAGGTTggtgtttcagaaaaaaactcttAATGACAAGGTTGCC AAGGTTACCCCTCGAATAATCATCAGTTCCGAagtttttaaaagttcaac TCGTTCaacaaagtaaattttttgagtGATCGCAAAGATGAATAATTATG TAATGCAATAAAACCTATAAAAGGcagacactcaattagcggaccctctg attggTGGACCCTCGGACAAATTCTTTTGCACGAAATTGCAAAAACCCCT ATTTTCGCTCTCCAATTAGCGAGAATCGAATATCAAACTGGTCAcagatt ttttctttgaagCACGTATTAGTTTTATTATCCAAAttagttttaaaagt tttaagtttTCTCTTGACCCATTCGACGAATTTAGCCGGGCCAACGAAAT CATAAACGCTTGCACTTCAACCCCCAGCCATCAGCTAGATTCAACCTTTT CCCAGTAGCTCGAGCTCTGGTTCCGGTATTCTGTTCGAATGATTgctaca atatttttttttcaactatGTTATCTGGTTCATGTTTGCAAACTAGTGAT TTCCCCTATGAACGGAGTCCAAATCTGACGATCCCTTTCTACCTTTCTTG TAAGTACGGTACCCTCTGACTTTCAAGTTAATCTTGTTCAACTTCTATTT TTGTGTTATATTATATTTCTATAGACATTCTTTAAATCGTGAAAATTAAA TTGTTGCGTCTCAAtaacctttctcttgttcttctatgTCCTAGTGTCCT GCACAAGTTCTAAAGACTCCCttacaccctgggatggcctaatttcaaaa ttggagctcttagatgaaaaagttctaaaatttgGACGCTTCTAGTTAGC GGACGTTTCTCCGGTGGTatccgctaattagaggctcCATCGGTGTCAAG TCAATGTAGAAGAGGGGTTAGAAAACGATTTTTCTAATCTTCTggagaaa aaaagacaaatgaatCAATTTTACTTGAACAGGAAAAAAGAGATGTgaga gaaaaaagttttttatttgagggTTGATCGTGGTTGTGGTCATCTTTCGA CCGCATGTTTTACGGTTTTTTGTGTTCGAAGGGTTTTAAAAACGTTGACA GAAAATGAGATAAAAAGAGCGaagtagaaaaaagaaaaaagaatggaGAA AAGGAATCATCAAGCAGAATGGAAATTGGAAAATATGTGGAAAGTTTTTC TGTTaagaaaatagataaaaattgTTGTTGATGTTagtttataaaacaaa aaaaatcatgaagATTTTCCTTTCGAACTAATTAGAATGTCATTCTTTAG AAACGCCTTTCGAGAAGTATCTTTGATTTTCACAGCTCAAAGTTTTCTTT TGACTTTTAGGAAGTCACAGTCTTTTTGTCTTCTGTTTTTGCAGTTAACT TCTTTTTTGGTGATATTTCTACTGTATGATCTCTAATATCTTGGGGAGCA ACATGCTGCTATTTAAAATGATTACTATCCCTTCCTAAACAAAATAGTTA TTGATTGGAAACACATCAAATCGAAATCCAATTTCAGTATATAGATTCCT AGCTGGTAAACATTTCAAACGTTGTATATGGGCgtattttgttgttattt taTGGGCGTATGGGGGTGGGGTAaggggatgtgccgctggtccAGGTAAC TTAGGAAGTgttcataaagtatctactagaagggggtggaggatttttcc aaaaatcggaaaaaaaattcgcACCCCTATGTTCAAAGATTTTTCGAACC TCCCCCTTAACCAAGCCAAAAacttttcccccccccccccttaaccaagc caaaaacttttcccccccccccccttaaccaagccaaaaacttttccccc ccccccccttaaccAAGCCAATAACTTTTCTCACCCCCTCCCCTccctaa gaaaattttttaataaataccCCCCTCTCGTGCAATCCTTGCCTTGTTCA TAAGTTAGATGAAAGTTGCTGAAATGTGAAATTGGATTTCAAACATCGCT TCCGGAACTTTACAATCTCATTTATATCCTTTAATTTTTGTCTGttcttt ttgggaaattttatCGTAGCGAGTGTTATAACTGAGGCGCAACCGTTTTG CGccgacaaagaaaattttaaaattttaacccTCTCATTTAGCTAGGTGA CCCTAGGTGCTTCCTGTTAGTGCGAGAGTTATTGAAAACAAGACTAAGAT TTCAAGCTATATTActtaaaaattgagatttttgcaGCATGCAAAGACCA TATATGCAAAGACAAATAATAGATTATGATTGGtgtaaagttttaaagaa aagttttcaaaaaaggcTCTGATAAATGGTTGAAAAACACTTGATTTTTG AATCAACCTGGTGGGATGTCAAAacaatttccccccccccccctaaagaT AAGATGgcaaaaaattatctttcacCGTACCTTTTTTTTCTGGCACTTTA CTAATGATTTTTTTAGCACGGGTGAAAAGAAATCAGCAACGTGTATTTGA CAGACCTCCCTGTTGAACTGGTTGTGTTTAATCATTCTTTTCTGTGATTT TCCCTTTCAACCTGGAAAAGGGTGATGATATGGCTCTAAACGAACCTTTT CAATATTTGGCCACTTTCAGGAAATTCTAATTCAAAAGCTGATATCGata gcaaaaataagaaaaaagcgaaaatgaaaagttgaaagaaaaataaaatc gaaCTGGAAGAGAAATATAGAATTTcatctttttgtactttttttttGTA CTTTCTTTTCTTCTGAAGGGAATATATTTCCCTATATATATCGTACTTTT CTCTAGCAAtgggatttgaaaataatataacttttttgggacttttcttt tttctttttccaatttCAGCCGTTTTTTCTTTCGATTTACACCTTCCATC GAAttacttttttcttgaaaaccGTTTGTTTGGGGAAGAAATTGGTTAAT GAAAAAAGCCCCCACTCGACAAAGAAACGTGAGGAAAAAACACTTTAATA GGATTGATATAGCGAAAAGaagttttaaataaataaacataaatTTGATA ACAAGAAAGCCTGTTTCTAATAAGCAGATGGCAGcattaaaaacaaacat tttatcCAACTTTGGATACTGTTTCTACAATCGCCTTTCCTTACATCTTT ATGTGCCTGCTATATCTTATGTAAAGACGTGAGGAAAGTTTGAGAGAGAA AATGAACGAGAGCTTGTTGAAAGGTGAATGAAGGGTAATCCCTCTTTTGG CCTTCTTTCTTATTTACTCCTTCTCCTAGTTGAAACTTGACTCGAATTGT TATCAAATCAAACATGGAAGGATCATTTCATAGTTTCACTTCATTAAATC atcttttttcattcttttatttcgtttttcttcctttttaaaaatattgt tcctcgaacaaaaacttttcatttacGATTTGATGAAGGACAAAATAAGT TTATTCACCCTCTACCCGAACaagaacaaatttctagttGACTGTGTTTT CAACCTGATGTTCTTTTCACTTAACACCCTATGCTAGATATTTCCCCATT ATGCAAACTATCCCTATTTATTCATTCTAAGTACTAATGAACTTTGTCTT TTTTCGAGCcttgatgttttttttcctCTTCAATTTTGAGATGATTTTTT GCGTTCAAATTAGAAGGAAGatatttgagcaaattttattattttaacac GGGAAATTAGAATAGAATGGTTGCTGACTTTTAAGGTGAAGATTAGATGA CCTTTTACAAGTTTGATCAGGTTTATCAAATATTTAGGTGCTTTGTAAGG GTCAAAGGTTGGCAAATCTGTCGATTATGTTTGGATTCAAAAGAATTCGT GTGTCCTTCTTTAAAATCTATGTTGAGAGAAAAGACTTCACGACCTTGAG CTCAAACCATATTGGCCTGTTCTTAGACGATTTTAAGCATTCAGTTTGAG TAGTTGACACATCGTACATTATTTCGGTTCCTTTCTACCTTTCTTGCGTT TGTTTGATCTACATTCGAAATAACATTCtaagttttgtatttttcttcat CGTTCAGGTCAACCACCTTGGTCACCGGTTGTCCCCTACAAAAATCAACT GACGTTGCCATCCAAAGAACGACTAAGTGCTAGTACGCAAGACTTACGAA ATGGTAACATGTTAAAATACTATGATGGATATCCTCAAGAGAACCACAAG AATCATAATtacattgaaacaaatgaaTCACTTATTAAAGAAGAAGATTT GATTCGGATCAACGTCTGTGGAATGATTTATGAGACTTTGCGAAGCACCC TCCAAAGATTCCCAGATACGTTACTTGGTGACAAAAGTCGATTGGATTTG TACTATGTTAAATCAAgagatttttattattttgataagAACAGACAAGC TTTTGAAGCCATTCTGTATTATTACCAAACAGGTGGCATTTTGATTCGGC CGCCCAACATTCCCATGCCGTTGTTCGCAGAGGAGGTGGCCTTCTTTGAC CTTGGTGAAAGTGTCTTTATGCAGTTACAAAAAGAGGAAGGTTACATATC TGACCAAGAACGCGTCTTACCGACGAACGAGCTTCAACGGAAAGTGTGGG AGTTGTTCGAATTCCCTGATTCTAGTCAAGCAGCACGCATCCTTGCAACA TGGTCCGTTCTCGTTATCATCTTATCCATCACTGTTTTTTGTTTGGAAAC TTTGCCACAATACTCAGTGAACAACAACAAGCCTCTGACGACTGCTGCAC CTTCAGGGAATGTTACAAACGGTACGCTCTCTGCAACTCCGAGTAAAAGT GAAGGTGAAATGTACCGTCAACCATGGTTTTCCTTTGAATTAGGCTGCAT CATTTGGTTTTCCTTTGAATATCTGGTGCGCCTTCTCTCATCCCCATCCA AATGGCAATTTGCCAAATCCTTTCTTAACACCATCGATTTATTGGCCATC CTTCCTTATTTCATCACCCTATCCATCAATTCGGAGAACACCACACCGCT ATCCGTTCTTCGGGTGGTCCGGTTGGTTCGTGTCTTCCGTATCTTCAAAT TGTCCAGACATTCACTTGGCTTGCGTATCTTGGGACACACATTACGAGCG AGTATCAGTGAATTGGGCATGTTGATATTCTTTCTGTGTCTTGGTGTCAT TCTGTTTTCCAGTGCCATATTCTATGCGGAACAAGGAATGAATGATCAAT TCCAAAGCATTCCCGATGCGTTTTGGTACAGTCTAGTCACCATGACAACC GTTGGATACGGAGACAAAGTTCCCAAAACATTACCTGGGAAATTTGTTGG AAGTCTTTGTGCGATCGTTGGCGTGTTGACAATTGCATTGCCAGTACCGG TTATTGTGTccaattttgagtttttttacaAGCGTGATCGGATGACGTTC GAAAGGAGCAAGTATAACACACCGTCGGAGAATCAATCCAAACGACAATC ACCTGATCAATCGCCTCAAAGCAATCATAAAGAGAACAACATCAATCATA ATCACAACGAAGATCCTCTCTTGACAACTACTGTTATGTAAACTTGTTAT CACGAGAGAGCTCCCGCTACATGGTGATTCATGAGTTTTTGTGGCTGCGT AAATAAGAGGAGGTAAACCATATGGTGATTGGGTTACCTAAATCCGTTCG GTATAGAAAGAACACTTTCACTGAAATAGAGatcattaaaattgatgatt taGACAGATGCTGATCGCCAAGTTTTAActtttaattgtttttcttaATG AAAGTCAATGCTGTTAGGTCTTAGCGAATCTTCACTGCAAGTGGTGTCTT TCGATTCCTTGTAATAACAGGAGAAAAGTCTTTAACAAGCAAGTGTTTGA AAACTTAATGTTGTCATCTTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010378XLOC_010378Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018563-exon-sc0000301-1491911889:344099..344228TCONS_00018563-exon-sc0000301-1491911889:344099..344228Clytia hemisphaericaexon
TCONS_00018563-exon-sc0000301-1510915933:344099..344228TCONS_00018563-exon-sc0000301-1510915933:344099..344228Clytia hemisphaericaexon
TCONS_00018563-exon-sc0000301-1575043694:344099..344228TCONS_00018563-exon-sc0000301-1575043694:344099..344228Clytia hemisphaericaexon
TCONS_00018563-exon-sc0000301-1491911889:349106..350921TCONS_00018563-exon-sc0000301-1491911889:349106..350921Clytia hemisphaericaexon
TCONS_00018563-exon-sc0000301-1510915933:349106..350921TCONS_00018563-exon-sc0000301-1510915933:349106..350921Clytia hemisphaericaexon
TCONS_00018563-exon-sc0000301-1575043694:349106..350921TCONS_00018563-exon-sc0000301-1575043694:349106..350921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000301supercontigsc0000301:344099..350921 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 15.4683 29.6021 17.7383 21.6608 16.6546 17.9083 3.74105 2.49947 1.07444 0.685466 0.227262 1.71296 9.25651 5.06499 1.13685 2.53548 0.779139 1.62181 1.98486 8.18073 0 0.146951 0 0
Blast
BLAST of TCONS_00018563 vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2)

HSP 1 Score: 399.053 bits (1024), Expect = 5.056e-131
Identity = 219/438 (50.00%), Postives = 293/438 (66.89%), Query Frame = 1
Query:  250 GYPQENHKNHNYIETNESLIKEEDLIRINVCGMIYETLRSTLQRFPDTLLGDKSRLDLYYVKSRDFYYFDKNRQAFEAILYYYQTGGILIRPPNIPMPLFAEEVAFFDLGESVFMQLQKEEGYISDQERVLPTNELQRKVWELFEFPDSSQAARILATWSVLVIILSITVFCLETLPQYSVNNNKPLTTAAPSGNVTNGTLSATPSKSEGEMYRQPWFSFELGCIIWFSFEYLVRLLSSPSKWQFAKSFLNTIDLLAILPYFITLSI----------NSENTTPXXXXXXXXXXXXFRIFKLSRHSLGLRILGHTLRASISELGMLIFFLCLGVILFSSAIFYAEQGMND-QFQSIPDAFWYSLVTMTTVGYGDKVPKTLPGKFVGSLCAIVGVLTIALPVPVIVSNFEFFYKRDRMTFERSKYNTPSENQSKRQSPD 1530
            G+PQ+ +      E  E ++       IN+ G+ +ET   TL +FP+TLLGD  +   Y+   R+ Y+FD+NR +F+AILYYYQ+GG L RP N+P+ +F+EE+ F++LGE      +++EGYI ++ER LP NE QR+VW LFE+P+SS  ARI+A  SV+VI++SI  FCLETLP +   N     +       +N T+    S S    +  P+F  E  CIIWFSFE+LVR  + PSK  F  + +N ID++AI+PYFITL              +    L++LRV+RLVRVFRIFKLSRHS GL+ILG TL+AS+ ELG+LIFFL +GVILFSSA+++AE    + QF SIPDAFW+++V+MTTVGYGD VP T+ GK VGSLCAI GVLTIALPVPVIVSNF +FY R+    E+++Y   +       SPD
Sbjct:   17 GHPQDTYDPEADHECCERVV-------INISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTS----FTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSCPKIPSSPD 443          
The following BLAST results are available for this feature:
BLAST of TCONS_00018563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA25.056e-13150.00Potassium voltage-gated channel subfamily A member... [more]
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