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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018563 ID=TCONS_00018563|Name=TCONS_00018563|organism=Clytia hemisphaerica|type=transcript|length=1946bp ATTTGAATGATGTTGGTCCTGTAGACGGTTTGGTAGGCTAGATCGTGAAG GCTTTTCTCAGTTTTCTGTGGAGAGGAGAAAATGCATCACCATCGATCTC TCAACAACCTGATGATGCAACCTAAACCCGGTCAACCACCTTGGTCACCG GTTGTCCCCTACAAAAATCAACTGACGTTGCCATCCAAAGAACGACTAAG TGCTAGTACGCAAGACTTACGAAATGGTAACATGTTAAAATACTATGATG GATATCCTCAAGAGAACCACAAGAATCATAATtacattgaaacaaatgaa TCACTTATTAAAGAAGAAGATTTGATTCGGATCAACGTCTGTGGAATGAT TTATGAGACTTTGCGAAGCACCCTCCAAAGATTCCCAGATACGTTACTTG GTGACAAAAGTCGATTGGATTTGTACTATGTTAAATCAAgagatttttat tattttgataagAACAGACAAGCTTTTGAAGCCATTCTGTATTATTACCA AACAGGTGGCATTTTGATTCGGCCGCCCAACATTCCCATGCCGTTGTTCG CAGAGGAGGTGGCCTTCTTTGACCTTGGTGAAAGTGTCTTTATGCAGTTA CAAAAAGAGGAAGGTTACATATCTGACCAAGAACGCGTCTTACCGACGAA CGAGCTTCAACGGAAAGTGTGGGAGTTGTTCGAATTCCCTGATTCTAGTC AAGCAGCACGCATCCTTGCAACATGGTCCGTTCTCGTTATCATCTTATCC ATCACTGTTTTTTGTTTGGAAACTTTGCCACAATACTCAGTGAACAACAA CAAGCCTCTGACGACTGCTGCACCTTCAGGGAATGTTACAAACGGTACGC TCTCTGCAACTCCGAGTAAAAGTGAAGGTGAAATGTACCGTCAACCATGG TTTTCCTTTGAATTAGGCTGCATCATTTGGTTTTCCTTTGAATATCTGGT GCGCCTTCTCTCATCCCCATCCAAATGGCAATTTGCCAAATCCTTTCTTA ACACCATCGATTTATTGGCCATCCTTCCTTATTTCATCACCCTATCCATC AATTCGGAGAACACCACACCGCTATCCGTTCTTCGGGTGGTCCGGTTGGT TCGTGTCTTCCGTATCTTCAAATTGTCCAGACATTCACTTGGCTTGCGTA TCTTGGGACACACATTACGAGCGAGTATCAGTGAATTGGGCATGTTGATA TTCTTTCTGTGTCTTGGTGTCATTCTGTTTTCCAGTGCCATATTCTATGC GGAACAAGGAATGAATGATCAATTCCAAAGCATTCCCGATGCGTTTTGGT ACAGTCTAGTCACCATGACAACCGTTGGATACGGAGACAAAGTTCCCAAA ACATTACCTGGGAAATTTGTTGGAAGTCTTTGTGCGATCGTTGGCGTGTT GACAATTGCATTGCCAGTACCGGTTATTGTGTccaattttgagttttttt acaAGCGTGATCGGATGACGTTCGAAAGGAGCAAGTATAACACACCGTCG GAGAATCAATCCAAACGACAATCACCTGATCAATCGCCTCAAAGCAATCA TAAAGAGAACAACATCAATCATAATCACAACGAAGATCCTCTCTTGACAA CTACTGTTATGTAAACTTGTTATCACGAGAGAGCTCCCGCTACATGGTGA TTCATGAGTTTTTGTGGCTGCGTAAATAAGAGGAGGTAAACCATATGGTG ATTGGGTTACCTAAATCCGTTCGGTATAGAAAGAACACTTTCACTGAAAT AGAGatcattaaaattgatgatttaGACAGATGCTGATCGCCAAGTTTTA ActtttaattgtttttcttaATGAAAGTCAATGCTGTTAGGTCTTAGCGA ATCTTCACTGCAAGTGGTGTCTTTCGATTCCTTGTAATAACAGGAGAAAA GTCTTTAACAAGCAAGTGTTTGAAAACTTAATGTTGTCATCTTCNN Run BLAST on NCBI transcript from alignment at sc0000301:344099..350921+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018563 ID=TCONS_00018563|Name=TCONS_00018563|organism=Clytia hemisphaerica|type=transcript|length=6823bp|location=Sequence derived from alignment at sc0000301:344099..350921+ (Clytia hemisphaerica) ATTTGAATGATGTTGGTCCTGTAGACGGTTTGGTAGGCTAGATCGTGAAG
GCTTTTCTCAGTTTTCTGTGGAGAGGAGAAAATGCATCACCATCGATCTC
TCAACAACCTGATGATGCAACCTAAACCCGGTAATAACCTTCTTTTCAAA
CCAATTCTCAAAATCGTCTTTCTTATAATTGGCTTTGCCTTACACTCTTC
TTTTTGAATCTCCCAATCACGATTCAGCAATTCTTTTCTGATCTAATTCA
GACTCCATACCACAAATAAAAGAAgagcaatatattttttaacatATTAA
CCCCTGTCTCCCTGGTCCGATGAGAATAATTTGCCACCAGTATGAAATCA
ATGAGCAAACACGTGCAAAAACCAATTGGGGATGTTTTCTCTTCACCATT
AGggtgtaatttttaaaaagtgtagCTTTTCAATCATGAAATCTCGAGTT
GCTTTTTCACCGCAACGATTATTTGGGCGACTTTATTTTTCCAGCGGGTA
CAGATGTCGGTCAGTGCCTTTGATACAGGGGTGGATATGTaattaaaact
gtttttattgATATAATTATATAAAGTTAATAATAGCGATGGCTTTTTTC
AACGTCGTGAGTCATGTTTTGATGTcgaaaagaagagagaaaaaaagcGA
CGAAGAGACGAATGGTAAGAGAAGTTCAACACTTGTCCGAGTTCAATATT
TTACGGTATTGCCCGAAGAAACAGTttatgactttttaaagtagattctt
ttgtgtttaatAACACTCAATAATAACACCCATAAATATATCTATTTCGT
TTATTCTAACACCATTGGTATTCCATGAGCCCGGAACTTTTTATTGGACT
GACCTTCGATGACCTTCTCTAAAATATAAGTTTAATATTCGTTTAATTTT
TTACAGTTTACACGGGTAGCCAACTCGGTTATAATGCGGACCAAATGGGA
ACATTGCAAGGTTggtgtttcagaaaaaaactcttAATGACAAGGTTGCC
AAGGTTACCCCTCGAATAATCATCAGTTCCGAagtttttaaaagttcaac
TCGTTCaacaaagtaaattttttgagtGATCGCAAAGATGAATAATTATG
TAATGCAATAAAACCTATAAAAGGcagacactcaattagcggaccctctg
attggTGGACCCTCGGACAAATTCTTTTGCACGAAATTGCAAAAACCCCT
ATTTTCGCTCTCCAATTAGCGAGAATCGAATATCAAACTGGTCAcagatt
ttttctttgaagCACGTATTAGTTTTATTATCCAAAttagttttaaaagt
tttaagtttTCTCTTGACCCATTCGACGAATTTAGCCGGGCCAACGAAAT
CATAAACGCTTGCACTTCAACCCCCAGCCATCAGCTAGATTCAACCTTTT
CCCAGTAGCTCGAGCTCTGGTTCCGGTATTCTGTTCGAATGATTgctaca
atatttttttttcaactatGTTATCTGGTTCATGTTTGCAAACTAGTGAT
TTCCCCTATGAACGGAGTCCAAATCTGACGATCCCTTTCTACCTTTCTTG
TAAGTACGGTACCCTCTGACTTTCAAGTTAATCTTGTTCAACTTCTATTT
TTGTGTTATATTATATTTCTATAGACATTCTTTAAATCGTGAAAATTAAA
TTGTTGCGTCTCAAtaacctttctcttgttcttctatgTCCTAGTGTCCT
GCACAAGTTCTAAAGACTCCCttacaccctgggatggcctaatttcaaaa
ttggagctcttagatgaaaaagttctaaaatttgGACGCTTCTAGTTAGC
GGACGTTTCTCCGGTGGTatccgctaattagaggctcCATCGGTGTCAAG
TCAATGTAGAAGAGGGGTTAGAAAACGATTTTTCTAATCTTCTggagaaa
aaaagacaaatgaatCAATTTTACTTGAACAGGAAAAAAGAGATGTgaga
gaaaaaagttttttatttgagggTTGATCGTGGTTGTGGTCATCTTTCGA
CCGCATGTTTTACGGTTTTTTGTGTTCGAAGGGTTTTAAAAACGTTGACA
GAAAATGAGATAAAAAGAGCGaagtagaaaaaagaaaaaagaatggaGAA
AAGGAATCATCAAGCAGAATGGAAATTGGAAAATATGTGGAAAGTTTTTC
TGTTaagaaaatagataaaaattgTTGTTGATGTTagtttataaaacaaa
aaaaatcatgaagATTTTCCTTTCGAACTAATTAGAATGTCATTCTTTAG
AAACGCCTTTCGAGAAGTATCTTTGATTTTCACAGCTCAAAGTTTTCTTT
TGACTTTTAGGAAGTCACAGTCTTTTTGTCTTCTGTTTTTGCAGTTAACT
TCTTTTTTGGTGATATTTCTACTGTATGATCTCTAATATCTTGGGGAGCA
ACATGCTGCTATTTAAAATGATTACTATCCCTTCCTAAACAAAATAGTTA
TTGATTGGAAACACATCAAATCGAAATCCAATTTCAGTATATAGATTCCT
AGCTGGTAAACATTTCAAACGTTGTATATGGGCgtattttgttgttattt
taTGGGCGTATGGGGGTGGGGTAaggggatgtgccgctggtccAGGTAAC
TTAGGAAGTgttcataaagtatctactagaagggggtggaggatttttcc
aaaaatcggaaaaaaaattcgcACCCCTATGTTCAAAGATTTTTCGAACC
TCCCCCTTAACCAAGCCAAAAacttttcccccccccccccttaaccaagc
caaaaacttttcccccccccccccttaaccaagccaaaaacttttccccc
ccccccccttaaccAAGCCAATAACTTTTCTCACCCCCTCCCCTccctaa
gaaaattttttaataaataccCCCCTCTCGTGCAATCCTTGCCTTGTTCA
TAAGTTAGATGAAAGTTGCTGAAATGTGAAATTGGATTTCAAACATCGCT
TCCGGAACTTTACAATCTCATTTATATCCTTTAATTTTTGTCTGttcttt
ttgggaaattttatCGTAGCGAGTGTTATAACTGAGGCGCAACCGTTTTG
CGccgacaaagaaaattttaaaattttaacccTCTCATTTAGCTAGGTGA
CCCTAGGTGCTTCCTGTTAGTGCGAGAGTTATTGAAAACAAGACTAAGAT
TTCAAGCTATATTActtaaaaattgagatttttgcaGCATGCAAAGACCA
TATATGCAAAGACAAATAATAGATTATGATTGGtgtaaagttttaaagaa
aagttttcaaaaaaggcTCTGATAAATGGTTGAAAAACACTTGATTTTTG
AATCAACCTGGTGGGATGTCAAAacaatttccccccccccccctaaagaT
AAGATGgcaaaaaattatctttcacCGTACCTTTTTTTTCTGGCACTTTA
CTAATGATTTTTTTAGCACGGGTGAAAAGAAATCAGCAACGTGTATTTGA
CAGACCTCCCTGTTGAACTGGTTGTGTTTAATCATTCTTTTCTGTGATTT
TCCCTTTCAACCTGGAAAAGGGTGATGATATGGCTCTAAACGAACCTTTT
CAATATTTGGCCACTTTCAGGAAATTCTAATTCAAAAGCTGATATCGata
gcaaaaataagaaaaaagcgaaaatgaaaagttgaaagaaaaataaaatc
gaaCTGGAAGAGAAATATAGAATTTcatctttttgtactttttttttGTA
CTTTCTTTTCTTCTGAAGGGAATATATTTCCCTATATATATCGTACTTTT
CTCTAGCAAtgggatttgaaaataatataacttttttgggacttttcttt
tttctttttccaatttCAGCCGTTTTTTCTTTCGATTTACACCTTCCATC
GAAttacttttttcttgaaaaccGTTTGTTTGGGGAAGAAATTGGTTAAT
GAAAAAAGCCCCCACTCGACAAAGAAACGTGAGGAAAAAACACTTTAATA
GGATTGATATAGCGAAAAGaagttttaaataaataaacataaatTTGATA
ACAAGAAAGCCTGTTTCTAATAAGCAGATGGCAGcattaaaaacaaacat
tttatcCAACTTTGGATACTGTTTCTACAATCGCCTTTCCTTACATCTTT
ATGTGCCTGCTATATCTTATGTAAAGACGTGAGGAAAGTTTGAGAGAGAA
AATGAACGAGAGCTTGTTGAAAGGTGAATGAAGGGTAATCCCTCTTTTGG
CCTTCTTTCTTATTTACTCCTTCTCCTAGTTGAAACTTGACTCGAATTGT
TATCAAATCAAACATGGAAGGATCATTTCATAGTTTCACTTCATTAAATC
atcttttttcattcttttatttcgtttttcttcctttttaaaaatattgt
tcctcgaacaaaaacttttcatttacGATTTGATGAAGGACAAAATAAGT
TTATTCACCCTCTACCCGAACaagaacaaatttctagttGACTGTGTTTT
CAACCTGATGTTCTTTTCACTTAACACCCTATGCTAGATATTTCCCCATT
ATGCAAACTATCCCTATTTATTCATTCTAAGTACTAATGAACTTTGTCTT
TTTTCGAGCcttgatgttttttttcctCTTCAATTTTGAGATGATTTTTT
GCGTTCAAATTAGAAGGAAGatatttgagcaaattttattattttaacac
GGGAAATTAGAATAGAATGGTTGCTGACTTTTAAGGTGAAGATTAGATGA
CCTTTTACAAGTTTGATCAGGTTTATCAAATATTTAGGTGCTTTGTAAGG
GTCAAAGGTTGGCAAATCTGTCGATTATGTTTGGATTCAAAAGAATTCGT
GTGTCCTTCTTTAAAATCTATGTTGAGAGAAAAGACTTCACGACCTTGAG
CTCAAACCATATTGGCCTGTTCTTAGACGATTTTAAGCATTCAGTTTGAG
TAGTTGACACATCGTACATTATTTCGGTTCCTTTCTACCTTTCTTGCGTT
TGTTTGATCTACATTCGAAATAACATTCtaagttttgtatttttcttcat
CGTTCAGGTCAACCACCTTGGTCACCGGTTGTCCCCTACAAAAATCAACT
GACGTTGCCATCCAAAGAACGACTAAGTGCTAGTACGCAAGACTTACGAA
ATGGTAACATGTTAAAATACTATGATGGATATCCTCAAGAGAACCACAAG
AATCATAATtacattgaaacaaatgaaTCACTTATTAAAGAAGAAGATTT
GATTCGGATCAACGTCTGTGGAATGATTTATGAGACTTTGCGAAGCACCC
TCCAAAGATTCCCAGATACGTTACTTGGTGACAAAAGTCGATTGGATTTG
TACTATGTTAAATCAAgagatttttattattttgataagAACAGACAAGC
TTTTGAAGCCATTCTGTATTATTACCAAACAGGTGGCATTTTGATTCGGC
CGCCCAACATTCCCATGCCGTTGTTCGCAGAGGAGGTGGCCTTCTTTGAC
CTTGGTGAAAGTGTCTTTATGCAGTTACAAAAAGAGGAAGGTTACATATC
TGACCAAGAACGCGTCTTACCGACGAACGAGCTTCAACGGAAAGTGTGGG
AGTTGTTCGAATTCCCTGATTCTAGTCAAGCAGCACGCATCCTTGCAACA
TGGTCCGTTCTCGTTATCATCTTATCCATCACTGTTTTTTGTTTGGAAAC
TTTGCCACAATACTCAGTGAACAACAACAAGCCTCTGACGACTGCTGCAC
CTTCAGGGAATGTTACAAACGGTACGCTCTCTGCAACTCCGAGTAAAAGT
GAAGGTGAAATGTACCGTCAACCATGGTTTTCCTTTGAATTAGGCTGCAT
CATTTGGTTTTCCTTTGAATATCTGGTGCGCCTTCTCTCATCCCCATCCA
AATGGCAATTTGCCAAATCCTTTCTTAACACCATCGATTTATTGGCCATC
CTTCCTTATTTCATCACCCTATCCATCAATTCGGAGAACACCACACCGCT
ATCCGTTCTTCGGGTGGTCCGGTTGGTTCGTGTCTTCCGTATCTTCAAAT
TGTCCAGACATTCACTTGGCTTGCGTATCTTGGGACACACATTACGAGCG
AGTATCAGTGAATTGGGCATGTTGATATTCTTTCTGTGTCTTGGTGTCAT
TCTGTTTTCCAGTGCCATATTCTATGCGGAACAAGGAATGAATGATCAAT
TCCAAAGCATTCCCGATGCGTTTTGGTACAGTCTAGTCACCATGACAACC
GTTGGATACGGAGACAAAGTTCCCAAAACATTACCTGGGAAATTTGTTGG
AAGTCTTTGTGCGATCGTTGGCGTGTTGACAATTGCATTGCCAGTACCGG
TTATTGTGTccaattttgagtttttttacaAGCGTGATCGGATGACGTTC
GAAAGGAGCAAGTATAACACACCGTCGGAGAATCAATCCAAACGACAATC
ACCTGATCAATCGCCTCAAAGCAATCATAAAGAGAACAACATCAATCATA
ATCACAACGAAGATCCTCTCTTGACAACTACTGTTATGTAAACTTGTTAT
CACGAGAGAGCTCCCGCTACATGGTGATTCATGAGTTTTTGTGGCTGCGT
AAATAAGAGGAGGTAAACCATATGGTGATTGGGTTACCTAAATCCGTTCG
GTATAGAAAGAACACTTTCACTGAAATAGAGatcattaaaattgatgatt
taGACAGATGCTGATCGCCAAGTTTTAActtttaattgtttttcttaATG
AAAGTCAATGCTGTTAGGTCTTAGCGAATCTTCACTGCAAGTGGTGTCTT
TCGATTCCTTGTAATAACAGGAGAAAAGTCTTTAACAAGCAAGTGTTTGA
AAACTTAATGTTGTCATCTTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00018563-exon-sc0000301-1491911889:344099..344228 | TCONS_00018563-exon-sc0000301-1491911889:344099..344228 | Clytia hemisphaerica | exon |
TCONS_00018563-exon-sc0000301-1510915933:344099..344228 | TCONS_00018563-exon-sc0000301-1510915933:344099..344228 | Clytia hemisphaerica | exon |
TCONS_00018563-exon-sc0000301-1575043694:344099..344228 | TCONS_00018563-exon-sc0000301-1575043694:344099..344228 | Clytia hemisphaerica | exon |
TCONS_00018563-exon-sc0000301-1491911889:349106..350921 | TCONS_00018563-exon-sc0000301-1491911889:349106..350921 | Clytia hemisphaerica | exon |
TCONS_00018563-exon-sc0000301-1510915933:349106..350921 | TCONS_00018563-exon-sc0000301-1510915933:349106..350921 | Clytia hemisphaerica | exon |
TCONS_00018563-exon-sc0000301-1575043694:349106..350921 | TCONS_00018563-exon-sc0000301-1575043694:349106..350921 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000301 | supercontig | sc0000301:344099..350921 + |
Blast
BLAST of TCONS_00018563 vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2) HSP 1 Score: 399.053 bits (1024), Expect = 5.056e-131 Identity = 219/438 (50.00%), Postives = 293/438 (66.89%), Query Frame = 1
Query: 250 GYPQENHKNHNYIETNESLIKEEDLIRINVCGMIYETLRSTLQRFPDTLLGDKSRLDLYYVKSRDFYYFDKNRQAFEAILYYYQTGGILIRPPNIPMPLFAEEVAFFDLGESVFMQLQKEEGYISDQERVLPTNELQRKVWELFEFPDSSQAARILATWSVLVIILSITVFCLETLPQYSVNNNKPLTTAAPSGNVTNGTLSATPSKSEGEMYRQPWFSFELGCIIWFSFEYLVRLLSSPSKWQFAKSFLNTIDLLAILPYFITLSI----------NSENTTPXXXXXXXXXXXXFRIFKLSRHSLGLRILGHTLRASISELGMLIFFLCLGVILFSSAIFYAEQGMND-QFQSIPDAFWYSLVTMTTVGYGDKVPKTLPGKFVGSLCAIVGVLTIALPVPVIVSNFEFFYKRDRMTFERSKYNTPSENQSKRQSPD 1530
G+PQ+ + E E ++ IN+ G+ +ET TL +FP+TLLGD + Y+ R+ Y+FD+NR +F+AILYYYQ+GG L RP N+P+ +F+EE+ F++LGE +++EGYI ++ER LP NE QR+VW LFE+P+SS ARI+A SV+VI++SI FCLETLP + N + +N T+ S S + P+F E CIIWFSFE+LVR + PSK F + +N ID++AI+PYFITL + L++LRV+RLVRVFRIFKLSRHS GL+ILG TL+AS+ ELG+LIFFL +GVILFSSA+++AE + QF SIPDAFW+++V+MTTVGYGD VP T+ GK VGSLCAI GVLTIALPVPVIVSNF +FY R+ E+++Y + SPD
Sbjct: 17 GHPQDTYDPEADHECCERVV-------INISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTIGYQQSTS----FTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYLQVTSCPKIPSSPD 443
The following BLAST results are available for this feature:
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