TCONS_00018573 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018573
Unique NameTCONS_00018573
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018573 ID=TCONS_00018573|Name=TCONS_00018573|organism=Clytia hemisphaerica|type=transcript|length=694bp
GTATAAAAATCCTCCAAGAGAAAAAATCTCCACTTCAACAAACCACGAAA
TACTTTCAAGCAGTTTTGAATGAATAAAATGGCATCTACTTTCACGATTA
CTACtttatcatcaattttgtttgtCGTTCTGTTGCTTCTTTCCAGCATT
GAAGCGATGCGCTCTGGATGTCCTTCATCATGCCCTTCAGCAACATGCAA
CGATTATGAAGACAGCTGTGGGTGCATGCGATGTTATCAAGGTATCAACC
ACTCATGCAATGATTACGGCATGGCTAGATGCAATCCTGACATCTCAAAA
TGTACCTTTAAAGAAGGCCCAAGAACGCCCCTCAATAAACATTGTACACC
CCTACCAAGATTGATCATTGACGAAGCATCACCGACTGAAAGTTTTACCC
AAAGAGTTAAAAATTTCTTCAGTGGATGGTTTTAAAGGCAGTAATTTTGT
AatcatatattttataaatttgaCTTTCAAACTGATAGATTCGTGGTGCA
GTTACTAATGAAAGGGGCAGTTGATTCCGGAATGGGAAATTCTTCCTGAA
TGTCCTTCTAGAATGTCGaagcatagaggtataaagaaagacagaagatg
aatttgtcggtaattggtcgttaaagtcttttgatttcttttatgtaata
aatcaaaagaaattctaggctcgcccgatgaaatacgacttttt
Run BLAST on NCBI

protein sequence of TCONS_00018573-protein

>TCONS_00018573-protein ID=TCONS_00018573-protein|Name=TCONS_00018573-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MNKMASTFTITTLSSILFVVLLLLSSIEAMRSGCPSSCPSATCNDYEDSC
GCMRCYQGINHSCNDYGMARCNPDISKCTFKEGPRTPLNKHCTPLPRLII
DEASPTESFTQRVKNFFSGWF
Run BLAST on NCBI

transcript from alignment at sc0000301:75194..78245-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018573 ID=TCONS_00018573|Name=TCONS_00018573|organism=Clytia hemisphaerica|type=transcript|length=3052bp|location=Sequence derived from alignment at sc0000301:75194..78245- (Clytia hemisphaerica)
GTATAAAAATCCTCCAAGAGAAAAAATCTCCACTTCAACAAACCACGAAA
TACTTTCAAGCAGTTTTGAATGAATAAAATGGCATCTACTTTCACGATTA
CTACTTTATCATCAATTTTGTTTGTCGTTCTGTTGCTTCTTTCCAGCATT
GAAGCGATGCGCTCTGGATGTCCTTCATCATGCCCTTCAGCAACATGCAG
TAAGTATTCGGTGAAATAGAACACTCGTGTTTTACATATCTGCGCAGAAA
TTAATTACATATTTGTGCAGAAATTACTGTAGATTATTCTGGATCATTTC
GTTTCGTATTGTCATTATTTCATATCAACTGATGATTGTGAAGAGCATGA
AACTTTAAGTATTGATAAAGAAATACTCTGTTTCTCATTAATGCGCAAAA
TAATTACATATCCGCGCGTAACAACACTCTTTGAAGATCTTCATCCCCAC
CTGCTCCTAACTTTGACAATGTGTAACTCCTCTTTAAATGCTCATTTTGA
ACTCGAACAATACGTGCATTAAGAATAAAGGTATCCATGGGAAAATAATG
GTACAAGATCTTGTACCGATGGAACTGAACGAAAGTGATTAACAAGGGTG
TAATAAAATAATTAGTTTTATAGTTTCATGATTCCACTCGAAGTCAGATT
TAAGTGACTTACCTTTAGATGAAAAGCAATATTGGTTTACACCCCATGCA
AGTTGGAAAAGGCAAACCTATCTTTGCCATTCTAAAGATAAACATTTTCA
CTTTATTCAGATATTGTTGCGCAATGAAAAGATTGTAATTGGAGTGGCTC
CTTAGGACTGAATCAAAATCTAACAAAAGTTTGATTTCTCACGCATTTTT
GATATTTGAAAAAAAAATTTCCGCTTTCCGATATCGGAAAATCGGAAAAA
TCGGGCTAAGATTTCGGATTTTGCTTCGAAATTTTTATCTCACGCAAAAT
GAACATCTCAAGTTGGCAGGTCTGAGTGAGACCCACTGGCACCTACCCTG
AGTATCAGAGGTTGAGTTTTCAAAGAATATAATCAACCTCTCAAGACCAA
TAATATAAATTTTATCGCACATGCGTCAATCTAATCACTATAGAAAGAAT
CAAAGATGAAGAGCTGACTCTTTTTAAAAAGCGTTGATGACATTCTTAAG
TTGTGTTTTCAACGACGGGAATAAAAATATCGACTGTCCAAGATCTTTGA
TGGTCGTCATGGTTACTTTTCTTTGCGTTGCTTGTGCGCTGAATAGAATC
TCGATTGGTCGGCACAGGTCAATATATGATTTTGGTCTGTGCTTTTCACC
GAGGGGTAAATTACTCGAAAAAAATCTCGTACACTTCTTAGAAAAATCAC
AAAAAAATCATGCAAAAAATCAAAAATCACAAACAAATCACAAAAAAATC
AAAAAATCACAAAAAAATCACAAAAAAATCAAAAAATCAAAAAGAAATCA
CAAAAAAATCAAAAGATCACAAAAAAATCACAAAAAAATCACAAAAAAAT
CAAAAAATCACAAAAAAATCACAGAAGAATAAAAATATCACAGAAAAATC
AAAAAATCACAGAAAAAATCAAAAAATCACAGAAAAAATCAAAGAATCAC
AGAAAAAATCAAAAAATCACAAAAAAATCAAAAAATCACAAAAAAATCAC
AAAAAAATCACAAAAAAATCACAAAAAAATCACAAAAAAATCACAAAAAA
ATCACAAAAAAATCACAAAAAAATCACAGAAAAAAATCAAAAAATCACAG
AAAAAAATCAAAAAATCAAAAAGAAATCACAAAAAAATCAAAAAATCACA
GAAAAAATCAAAAAATCACAGAAAAAATCAAAAAATCACAAAAAAATCAA
AAATCATTTCGTACGCTTTTTTCGAAGTGATTTACCCCTCGCTTTTCACG
GTAACTGGCACCCCTTCCCACTGGAAAAATTGGCCAAAATATCGTCCCCA
GTGGAAAATCATCCTCTAATTTTTATCCTCACTGAAAATAATCAAATAAA
CCAATCCCCACTGCAAAACATTATGCTATTTTTCCCATCCTCACTGAAAT
TTCTGACTTGAAAACAAAAGAATTGAAATCATTAGCCATAAAAAATATGG
GAATATTAATCCCTATCGAATTTCAGTCAGTTATTTTTATCCCCACTGGC
TGAAAAAATTCTACCGGGTCTGTGAGAAGGGGGTGTTGTCTGAGAACATC
GATGCTGGGAAGGATGATAGGTTTCTAAGATGCCAAGGGAAATACTAATT
TTCACTTTTCTTTAGACGATTATGAAGACAGCTGTGGGTGCATGCGATGT
TATCAAGGTATCAACCACTCATGCAATGATTACGGCATGGCTAGATGCAA
TCCTGACATCTCAAAATGTACCTTTAAAGAAGGCCCAAGAACGCCCCTCA
ATAAACATTGTACACCCCGTAAGTTTTACAATACTTCACACAATACGTTT
GGAAATGATTATCATAACTTGAAGTAAAGAATAGGATATTCTGTGCTGCA
TACATACAATATAAAACCAATTAAATAACTAATAACCCTAAAACCTTCAA
GTTCGTTAAATGTAAATCAAGATTGGGTATCTGCTTGCTCTATGACGTCA
CAATAACCAACATGGAGTCTTTGATAGCAAAACTAAATTGTACAGCCTAT
ATTTATTTGAAATTGTTTTCGGTCAAGAGAGAACTTAACCTTAATCTCAT
TTCATTTCAGTACCAAGATTGATCATTGACGAAGCATCACCGACTGAAAG
TTTTACCCAAAGAGTTAAAAATTTCTTCAGTGGATGGTTTTAAAGGCAGT
AATTTTGTAATCATATATTTTATAAATTTGACTTTCAAACTGATAGATTC
GTGGTGCAGTTACTAATGAAAGGGGCAGTTGATTCCGGAATGGGAAATTC
TTCCTGAATGTCCTTCTAGAATGTCGAAGCATAGAGGTATAAAGAAAGAC
AGAAGATGAATTTGTCGGTAATTGGTCGTTAAAGTCTTTTGATTTCTTTT
ATGTAATAAATCAAAAGAAATTCTAGGCTCGCCCGATGAAATACGACTTT
TT

Coding sequence (CDS) from alignment at sc0000301:75194..78245-

>TCONS_00018573 ID=TCONS_00018573|Name=TCONS_00018573|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at sc0000301:75194..78245- (Clytia hemisphaerica)
TACCAAGATTGATCATTGACGAAGCATCACCGACTGAAAGTTTTACCCAA
AGAGTTAAAAATTTCTTCAGTGGATGGTTTTAAACGATTATGAAGACAGC
TGTGGGTGCATGCGATGTTATCAAGGTATCAACCACTCATGCAATGATTA
CGGCATGGCTAGATGCAATCCTGACATCTCAAAATGTACCTTTAAAGAAG
GCCCAAGAACGCCCCTCAATAAACATTGTACACCCCATGAATAAAATGGC
ATCTACTTTCACGATTACTACTTTATCATCAATTTTGTTTGTCGTTCTGT
TGCTTCTTTCCAGCATTGAAGCGATGCGCTCTGGATGTCCTTCATCATGC
CCTTCAGCAACATGCATACCAAGATTGATCATTGACGAAGCATCACCGAC
TGAAAGTTTTACCCAAAGAGTTAAAAATTTCTTCAGTGGATGGTTTTAAA
CGATTATGAAGACAGCTGTGGGTGCATGCGATGTTATCAAGGTATCAACC
ACTCATGCAATGATTACGGCATGGCTAGATGCAATCCTGACATCTCAAAA
TGTACCTTTAAAGAAGGCCCAAGAACGCCCCTCAATAAACATTGTACACC
CCATGAATAAAATGGCATCTACTTTCACGATTACTACTTTATCATCAATT
TTGTTTGTCGTTCTGTTGCTTCTTTCCAGCATTGAAGCGATGCGCTCTGG
ATGTCCTTCATCATGCCCTTCAGCAACATGCATACCAAGATTGATCATTG
ACGAAGCATCACCGACTGAAAGTTTTACCCAAAGAGTTAAAAATTTCTTC
AGTGGATGGTTTTAAACGATTATGAAGACAGCTGTGGGTGCATGCGATGT
TATCAAGGTATCAACCACTCATGCAATGATTACGGCATGGCTAGATGCAA
TCCTGACATCTCAAAATGTACCTTTAAAGAAGGCCCAAGAACGCCCCTCA
ATAAACATTGTACACCCCATGAATAAAATGGCATCTACTTTCACGATTAC
TACTTTATCATCAATTTTGTTTGTCGTTCTGTTGCTTCTTTCCAGCATTG
AAGCGATGCGCTCTGGATGTCCTTCATCATGCCCTTCAGCAACATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010382XLOC_010382Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018573-proteinTCONS_00018573-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018573-exon-sc0000301-1575043694:78047..78245TCONS_00018573-exon-sc0000301-1575043694:78047..78245Clytia hemisphaericaexon
TCONS_00018573-exon-sc0000301-1575043694:75828..75980TCONS_00018573-exon-sc0000301-1575043694:75828..75980Clytia hemisphaericaexon
TCONS_00018573-exon-sc0000301-1575043694:75194..75535TCONS_00018573-exon-sc0000301-1575043694:75194..75535Clytia hemisphaericaexon
TCONS_00018573-exon-sc0000301-1510915933:78047..78245TCONS_00018573-exon-sc0000301-1510915933:78047..78245Clytia hemisphaericaexon
TCONS_00018573-exon-sc0000301-1510915933:75828..75980TCONS_00018573-exon-sc0000301-1510915933:75828..75980Clytia hemisphaericaexon
TCONS_00018573-exon-sc0000301-1510915933:75194..75535TCONS_00018573-exon-sc0000301-1510915933:75194..75535Clytia hemisphaericaexon
TCONS_00018573-exon-sc0000301-1491911889:78047..78245TCONS_00018573-exon-sc0000301-1491911889:78047..78245Clytia hemisphaericaexon
TCONS_00018573-exon-sc0000301-1491911889:75828..75980TCONS_00018573-exon-sc0000301-1491911889:75828..75980Clytia hemisphaericaexon
TCONS_00018573-exon-sc0000301-1491911889:75194..75535TCONS_00018573-exon-sc0000301-1491911889:75194..75535Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000301supercontigsc0000301:75194..78245 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.370317	0.323226	0.515644	0.535865	0.627665	0.468037	3.30294	3.21931	0.185146	0.696181	0.228791	0.537453	4.42559	3.02473	0.386762	0.425649	78.1826	72.7662	15.1314	16.2491	47.8446	45.584	16.8948	18.0266	20.235	31.7324	0.841628	0.442849	0.424401	0.174593
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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